mRNA_F-serratus_M_contig1449.3178.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1449.3178.1
Unique NamemRNA_F-serratus_M_contig1449.3178.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1449.3178.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.370e-53
Identity = 109/199 (54.77%), Postives = 134/199 (67.34%), Query Frame = 2 
Query:  377 ENSINQSIQSALRTLFRELSGGEGGGGKVDVERAGITGT----------TSASVEALRVALAKVPGERFALGETEDAAEALETILG*LAQGAKAVAIRQVFGMRIREMLLCPKCGISAPEVPTSYEANVFYVHVSALQEGRKNNPVCSFDVALEEASLGDLLTCSNAECNVGPGRERLPGRRSITGEPPAVFSLGLVWN 943
            E   +  ++++LR LFRELS  +GG                        TSASVEALR ALA++ G RF  G+ +DAAEA+ETILG L +G+    IRQVF MRIRE L+CP+CG S+PE P +YEANVFY HVSAL+E R+  P C FDVAL EAS GDL+TC NA C++   +ERLP +R ITG PP+VFSLGLVWN
Sbjct: 1612 EKEPSHRVEASLRALFRELSEVDGGXXXXXXXXXXXXXXXXXXXXXXXXTSASVEALRTALAELSGARFGAGKMDDAAEAMETILGCLVKGSSPAVIRQVFSMRIREALVCPRCGTSSPEKPATYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLVTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLGLVWN 1810
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BLAST of mRNA_F-serratus_M_contig1449.3178.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 4.170e-51
Identity = 108/211 (51.18%), Postives = 133/211 (63.03%), Query Frame = 2 
Query:  377 ENSINQSIQSALRTLFRELSGGEGGGGKVDVERAGITGTT----------------------SASVEALRVALAKVPGERFALGETEDAAEALETILG*LAQGAKAVAIRQVFGMRIREMLLCPKCGISAPEVPTSYEANVFYVHVSALQEGRKNNPVCSFDVALEEASLGDLLTCSNAECNVGPGRERLPGRRSITGEPPAVFSLGLVWN 943
            E   +  ++++LR LFRELS  +GG                                     SASVEALR ALA++ G RF  G+ +DAAEA+ETILG L +G+    IRQVF MRIRE L+CP+CG S+PE P +YEANVFY HVSAL+E R+  P C FDVAL EAS GDL+TC NA C++   +ERLP +R ITG PP+VFSLGLVWN
Sbjct: 2144 EKEPSHRVEASLRALFRELSEVDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASVEALRTALAELSGARFGAGKMDDAAEAMETILGCLVKGSSPAVIRQVFSMRIREALVCPRCGTSSPEKPAAYEANVFYAHVSALREAREKTPGCPFDVALREASHGDLMTCRNAGCSLSRRKERLPSQRFITGVPPSVFSLGLVWN 2354
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1449.3178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI2.370e-5354.77USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE4.170e-5151.18USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1449contigF-serratus_M_contig1449:203406..206280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1684
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1449.3178.1prot_F-serratus_M_contig1449.3178.1Fucus serratus malepolypeptideF-serratus_M_contig1449 205375..206039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.1241736-UTR-F-serratus_M_contig1449:203405..2039981622929431.1241736-UTR-F-serratus_M_contig1449:203405..203998Fucus serratus maleUTRF-serratus_M_contig1449 203406..203998 -
1690962848.6904643-UTR-F-serratus_M_contig1449:203405..2039981690962848.6904643-UTR-F-serratus_M_contig1449:203405..203998Fucus serratus maleUTRF-serratus_M_contig1449 203406..203998 -
1622929431.135012-UTR-F-serratus_M_contig1449:204400..2046831622929431.135012-UTR-F-serratus_M_contig1449:204400..204683Fucus serratus maleUTRF-serratus_M_contig1449 204401..204683 -
1690962848.7040403-UTR-F-serratus_M_contig1449:204400..2046831690962848.7040403-UTR-F-serratus_M_contig1449:204400..204683Fucus serratus maleUTRF-serratus_M_contig1449 204401..204683 -
1622929431.1507726-UTR-F-serratus_M_contig1449:205173..2053741622929431.1507726-UTR-F-serratus_M_contig1449:205173..205374Fucus serratus maleUTRF-serratus_M_contig1449 205174..205374 -
1690962848.7180097-UTR-F-serratus_M_contig1449:205173..2053741690962848.7180097-UTR-F-serratus_M_contig1449:205173..205374Fucus serratus maleUTRF-serratus_M_contig1449 205174..205374 -
1622929431.208927-UTR-F-serratus_M_contig1449:206039..2062801622929431.208927-UTR-F-serratus_M_contig1449:206039..206280Fucus serratus maleUTRF-serratus_M_contig1449 206040..206280 -
1690962848.7608848-UTR-F-serratus_M_contig1449:206039..2062801690962848.7608848-UTR-F-serratus_M_contig1449:206039..206280Fucus serratus maleUTRF-serratus_M_contig1449 206040..206280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.1693258-CDS-F-serratus_M_contig1449:205374..2053791622929431.1693258-CDS-F-serratus_M_contig1449:205374..205379Fucus serratus maleCDSF-serratus_M_contig1449 205375..205379 -
1690962848.7302823-CDS-F-serratus_M_contig1449:205374..2053791690962848.7302823-CDS-F-serratus_M_contig1449:205374..205379Fucus serratus maleCDSF-serratus_M_contig1449 205375..205379 -
1622929431.1930296-CDS-F-serratus_M_contig1449:205678..2060391622929431.1930296-CDS-F-serratus_M_contig1449:205678..206039Fucus serratus maleCDSF-serratus_M_contig1449 205679..206039 -
1690962848.746514-CDS-F-serratus_M_contig1449:205678..2060391690962848.746514-CDS-F-serratus_M_contig1449:205678..206039Fucus serratus maleCDSF-serratus_M_contig1449 205679..206039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1449.3178.1

>prot_F-serratus_M_contig1449.3178.1 ID=prot_F-serratus_M_contig1449.3178.1|Name=mRNA_F-serratus_M_contig1449.3178.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MLLFSSISCTISAFSLYGEYVVRSFLPNGVFYLVTTGWVFDISLCENSIN
QSIQSALRTLFRELSGGEGGGGKVDVERAGITGTTSASVEALRVALAKVP
GERFALGETEDAAEALETILG*
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mRNA from alignment at F-serratus_M_contig1449:203406..206280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1449.3178.1 ID=mRNA_F-serratus_M_contig1449.3178.1|Name=mRNA_F-serratus_M_contig1449.3178.1|organism=Fucus serratus male|type=mRNA|length=2875bp|location=Sequence derived from alignment at F-serratus_M_contig1449:203406..206280- (Fucus serratus male)
CAAAGTAAGCGGGCTCGTGCTGGTTTGCTCGCCCTTGTTGACTAGCCCCA
AGTGGCGCGAACTGGTATCCTCCGGACGTTCTGTTTGTAGATGTCATGAC
GTTTTTTCTCTGGTGTTACGTTCGTTTTGCTTTGTTTTGCTTTGTTTTTG
TCTCTATGCTTTCGTTGAAGCCGCAGCCCTTCGTTCAATCGTCCTTCGAA
TGCAGGCGCCCCGGTAGCCACACGTGTTTCTATTTTTGGAGATGTTGCTT
TTTTCGAGTATTTCTTGTACCATTTCCGCTTTCTCTTTGTATGGAGAGTA
CGTCGTACGTTCTTTCCTTCCGAATGGTGTTTTCTACCTTGTGACCACGG
GCTGGGTTTTTGACATCAGCTTATGTGAGAATTCAATCAATCAATCAATT
CAATCCGCGCTCCGCACGCTCTTCCGGGAACTTTCTGGAGGGGAGGGCGG
CGGAGGGAAGGTGGATGTGGAGCGGGCCGGCATTACCGGTACAACGAGCG
CTTCCGTGGAGGCCCTCCGTGTGGCACTGGCAAAGGTGCCGGGGGAGCGG
TTTGCCTTGGGGGAGACGGAGGATGCGGCTGAAGCACTGGAGACCATCCT
AGGTGAGATCTGAAATGCTACTGGCGCTTTTTCTTATGGAGGCAGTGCAT
TTTTTCCCCTTGCAACTTGGACGGAATGCCAGAAAGCCCGTTACGTTTTC
CGAGGGTATCGCTTCAAAAGACCTACCGGTATACAAGTAGAAGATTGTGT
CACTTTTTCCACCAAATCTTCGTTTGCCCACACCACACCGTAAGCACGGT
CCATGGCTCATATTTTGGCGAAACGCGCCCCGCGTCTGTCCTGTGTTTCC
TCCTCCGATACGCCCGATCCTATCCCGTTCCTATCCCCGACCCGTGCACA
GGTTGACTTGCTCAGGGGGCTAAGGCGGTGGCGATCCGCCAAGTGTTCGG
CATGCGCATCCGCGAGATGTTGCTGTGCCCCAAGTGCGGCATTTCTGCTC
CAGAGGTGCCCACCTCATACGAGGCCAATGTCTTTTATGTCCACGTTTCG
GCCCTGCAAGAGGGGAGGAAGAATAATCCCGTGTGCTCCTTCGACGTGGC
ACTGGAGGTGAGATTGTTATCTATAAATAGTTGGTATAGTATTTGAGAGT
GGTCGGCAGGACATGCATGTCTCTCATGAAGTTTTTCTCAAAACCCTTGG
TCTACCTTTTGTTTTAGACTTTTGCCCTTGCTGCCCTTTGGCATCGTAGC
TATGCTAGGGGGCGTAGAAGCTCGCGCAGAATAGGTAAGGCCTCCTCCCG
TTTCTAGGCAACGCGGCAGGCCTTTTTTCACGCGCGCGAAGCGCCGCAGT
TTTGTCTTGTTGACTGCCCTTCGTGTTCGCTCCGACTCGAGCAATAACCC
ACTAATAATAATAGAATTGGAATTCCATTCATTCATTCATTCATCCATAT
TCCATTGATTATTTCATGTAATGGATGATCTTTTTATTGATTGTTTGATT
CAACTGGTATTATAGTACACACGCGAAAAGTTGACATTCGCCAATCGCTT
TGACCGCGAAACCGTCCGCGCCTGATAATGGCGATCCCCCATCTCAGGAG
GCGAGCCTCGGGGATCTTTTAACCTGCAGCAACGCCGAGTGCAATGTAGG
CCCAGGACGGGAGCGCCTGCCGGGCCGACGCTCGATCACCGGCGAGCCTC
CTGCAGTGTTCTCGCTGGGGTTGGTGTGGAACAAACAACTGGGGGCCGGG
GCCCGTGGCCGACCTCCTCGAGATGCTCAGCCCCACGGTTGACCTCGACG
TCGTGTTTCGACAAAAGCGCGGAGGAGGCGGCGCCCCGAAGATGGCGTGG
CCATCGGAGGAGGATACTTGCGTTGGCAAGGTAAAAGGGGAGGCGGCAAG
GCCAAGGCCGTGCGCCTAACTCATGCGCATGCGTGCGTGCCCCTTGTTAT
GTTGTATTTTTTCGTTTTGTTGTGATCGATCGTATCTGTGATGCATTTTT
TCTTGTTTTTTAGACACAATCGGCAACAATCGATCGATGATCCTCCCGGG
CTTTAACAGGCACCCACACGTGTACACACCAAGTTTTGTCGACTTGACCC
AGCGTTGGGTTTGCAAGCTGGTGGTGGACTGACCCAGCGCGTTTACAGGA
TAGGGCTCCATGGCGATGTCCCCTCCTCTTTTCAACCCCCGTAGCGACTG
CGGCTGCCGGCTGTCGGTGTGGACTAGACTTATCCCTCCCTCGATTTCCT
CGATTTCCTCCCTTCGCGCCTTTCTGCTCCAGGCGCACTTGATTGGTTTA
CACTGCTTCCACGTGAGGAAGCACCACTACGTTGCGTTTGTTCGCAACAG
GGGAGGGGGAGTGGCTGCTGGTCGATGACGACAAGGTGATTCCGGTGAGT
GAGGAAGAAAGAAGCGTGTCGTTTTGCCTTGAGTGGCGCGAGCCTAGGGG
GCGCTTGCTTACGATGCGATGAATGTCTCGCCATTGGGCGTTCGCTTTTC
GAGGCTCTCTGGCCTCCGTCATTTTGACGTGAGTCGAAGGCCGGGAGTTG
ATGGCGGCGACGCTAACTAGGGTAGGGATGTTTCGGCGCTGCAGACCCGA
CGCGACCCCCTGGACGCGAAGAAGAGGCATCAATCATTGAACCCTTTTAA
CCCTCTCGTTGTTCACTGTTCCGTGCGAACCTACTTTCTCGTACGACGTG
TCCGTTTGGTTCACGTGGAACACTCAGGAGTCGTTTGACAACAGGCACGG
GGAACGCGTCGGCAAAACATGACGTCCGTGCTTAAATAATTTTCAGATCC
GCGCCCTTCTGTCTCTGTCGTGTCTGTATCAACCTTTTTCATCATGCAGG
TTTATTTTTTCTTACCTGAGCCGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1449:203406..206280-

>mRNA_F-serratus_M_contig1449.3178.1 ID=mRNA_F-serratus_M_contig1449.3178.1|Name=mRNA_F-serratus_M_contig1449.3178.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1449:203406..206280- (Fucus serratus male)
ATGTTGCTTTTTTCGAGTATTTCTTGTACCATTTCCGCTTTCTCTTTGTA
TGGAGAGTACGTCGTACGTTCTTTCCTTCCGAATGGTGTTTTCTACCTTG
TGACCACGGGCTGGGTTTTTGACATCAGCTTATGTGAGAATTCAATCAAT
CAATCAATTCAATCCGCGCTCCGCACGCTCTTCCGGGAACTTTCTGGAGG
GGAGGGCGGCGGAGGGAAGGTGGATGTGGAGCGGGCCGGCATTACCGGTA
CAACGAGCGCTTCCGTGGAGGCCCTCCGTGTGGCACTGGCAAAGGTGCCG
GGGGAGCGGTTTGCCTTGGGGGAGACGGAGGATGCGGCTGAAGCACTGGA
GACCATCCTAGATGTTGCTTTTTTCGAGTATTTCTTGTACCATTTCCGCT
TTCTCTTTGTATGGAGAGTACGTCGTACGTTCTTTCCTTCCGAATGGTGT
TTTCTACCTTGTGACCACGGGCTGGGTTTTTGACATCAGCTTATGTGAGA
ATTCAATCAATCAATCAATTCAATCCGCGCTCCGCACGCTCTTCCGGGAA
CTTTCTGGAGGGGAGGGCGGCGGAGGGAAGGTGGATGTGGAGCGGGCCGG
CATTACCGGTACAACGAGCGCTTCCGTGGAGGCCCTCCGTGTGGCACTGG
CAAAGGTGCCGGGGGAGCGGTTTGCCTTGGGGGAGACGGAGGATGCGGCT
GAAGCACTGGAGACCATCCTAGGTTGAGTTGA
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