mRNA_F-serratus_M_contig1449.3176.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1449.3176.1
Unique NamemRNA_F-serratus_M_contig1449.3176.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1449.3176.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.600e-21
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 2 
Query:  188 TSGVMSGPDA---LFLLGQLRDMIISTTQKMGGEDAMVGKNAMEILRQWC---VSNCSFEEVFNSVRGMLPATA-PHRNMLDRPLDWNATMIIPKQLRQVWKAMFVDGDGNCMWRSVGKALWDSDQFWPQLKLVVLGWAAANAETLVGDEGVLF 628
            T GVM+   A   L  LG     +++ T +    +    K  +   R++     + C++ +VF +  G++P  A P +       D  ATMI+  +LR+ + A++V+GDGNC WRS+ KALW +D++W QLKL VL W+A N E LVG+ G LF
Sbjct:    4 TRGVMTDTLASRNLSRLGSAALGVVNNTSQRARRENAGAKGRIPSQREYLRAIAAECTWPKVFGTPEGVVPTVARPGKGQ--EMYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALF 155
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BLAST of mRNA_F-serratus_M_contig1449.3176.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.190e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  458 RQVWKAMFVDGDGNCMWRSVGKALWDSDQFWPQLKLVVLGWAAANAETLVGDEGVLFRCKKFYSQDV 658
            ++ W A++V GDGNC WRS+ K LW+SD++W QLKLVVL WAAA+AE LV +  VL      +S D+
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDI 69
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1449.3176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE6.600e-2137.01SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE2.190e-1453.73SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1449contigF-serratus_M_contig1449:194130..195764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size665
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1449.3176.1prot_F-serratus_M_contig1449.3176.1Fucus serratus malepolypeptideF-serratus_M_contig1449 194293..195764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.04-UTR-F-serratus_M_contig1449:194129..1942921622929431.04-UTR-F-serratus_M_contig1449:194129..194292Fucus serratus maleUTRF-serratus_M_contig1449 194130..194292 +
1690962848.6479568-UTR-F-serratus_M_contig1449:194129..1942921690962848.6479568-UTR-F-serratus_M_contig1449:194129..194292Fucus serratus maleUTRF-serratus_M_contig1449 194130..194292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929431.0512753-CDS-F-serratus_M_contig1449:194292..1943241622929431.0512753-CDS-F-serratus_M_contig1449:194292..194324Fucus serratus maleCDSF-serratus_M_contig1449 194293..194324 +
1690962848.6584926-CDS-F-serratus_M_contig1449:194292..1943241690962848.6584926-CDS-F-serratus_M_contig1449:194292..194324Fucus serratus maleCDSF-serratus_M_contig1449 194293..194324 +
1622929431.061573-CDS-F-serratus_M_contig1449:194910..1951241622929431.061573-CDS-F-serratus_M_contig1449:194910..195124Fucus serratus maleCDSF-serratus_M_contig1449 194911..195124 +
1690962848.667986-CDS-F-serratus_M_contig1449:194910..1951241690962848.667986-CDS-F-serratus_M_contig1449:194910..195124Fucus serratus maleCDSF-serratus_M_contig1449 194911..195124 +
1622929431.080156-CDS-F-serratus_M_contig1449:195509..1957641622929431.080156-CDS-F-serratus_M_contig1449:195509..195764Fucus serratus maleCDSF-serratus_M_contig1449 195510..195764 +
1690962848.679243-CDS-F-serratus_M_contig1449:195509..1957641690962848.679243-CDS-F-serratus_M_contig1449:195509..195764Fucus serratus maleCDSF-serratus_M_contig1449 195510..195764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1449.3176.1

>prot_F-serratus_M_contig1449.3176.1 ID=prot_F-serratus_M_contig1449.3176.1|Name=mRNA_F-serratus_M_contig1449.3176.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MSRQTRKKTSGVMSGPDALFLLGQLRDMIISTTQKMGGEDAMVGKNAMEI
LRQWCVSNCSFEEVFNSVRGMLPATAPHRNMLDRPLDWNATMIIPKQLRQ
VWKAMFVDGDGNCMWRSVGKALWDSDQFWPQLKLVVLGWAAANAETLVGD
EGVLFRCKKFYSQDVVQ
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mRNA from alignment at F-serratus_M_contig1449:194130..195764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1449.3176.1 ID=mRNA_F-serratus_M_contig1449.3176.1|Name=mRNA_F-serratus_M_contig1449.3176.1|organism=Fucus serratus male|type=mRNA|length=1635bp|location=Sequence derived from alignment at F-serratus_M_contig1449:194130..195764+ (Fucus serratus male)
CGGACGTGCCTGCCTGCCTGCATAAGGAAGACCCATTTCTGCCAACAATA
AGCAGCGACGTCGGACGATAGTACGTGCGCCTTGTTGGAGCACGACCTTA
GCACGACAGCCCGTATCGCTCTGCAGACGGCGACGGAGCTGCTGATCCGT
CGAAGAGACCAACATGTCCCGCCAAACGCGCAAGAAGACATCAGGGTAAG
GGGTGCATCCGTGCCCCTCTGTGTGTGTGTTTTTTATAGCCCTACATGTA
AGCGGACTCGTGCTCGTTCGATCGCCCTTGTTGACTAGCCACAAGTGGCG
CGAACTGGTATCCTCCGGACGTTCTGTTTGCAGATGCCATGACGTATTTT
CTCTGGTGTTACGTTTGTTTTCCTTTGTGCTTCGTTTTTTGTCTCTATGT
TTTCGTTGAAGCCGCAGCCCTTCGTTCAATCGTCCTTCGAATGCAGGCGC
CCCGGTAGCCACACGTGTTTCTATTTTTGGAGATGTCGCTTTTTTCGAGT
AGTTCTTGTACCATTTCCGCTTTCTCTTTGTATGGAGAGTACGTCGTACG
TTCTTTCCTTCAGAATGGTGTTTTCTACCTTGTGACCACGGGCGGTGTTT
TTTGACATCAGCTTATGTGAGAATTCAATCAATCAATCAATGTACCCTGG
TCCGGCAATGATGTTGCTGTGATGTTGCTGTCAACTGCTGCTGCCGTGTA
GCTTGCATCTCCTTCCTTCCAGTGTAACGCTCAGGCTTAGGATTATGTAA
ACTCGCGTGTTATTTGTGCTCATGGTTGTAGGGTAATGAGTGGGCCTGAT
GCCCTATTCCTTCTGGGTCAGCTCCGTGACATGATAATTAGTACGACGCA
AAAGATGGGAGGAGAAGACGCCATGGTGGGAAAGAATGCGATGGAGATAC
TCCGGCAGTGGTGCGTCTCTAACTGTTCGTTCGAGGAAGTCTTCAACTCT
GTCCGTGGGATGTTGCCGGCCACCGCACCCCACAGGAATATGTTGGTACG
TCGCTCGTTGCAACTTGGTTTAAATATATATCTTCTGTGTCACGTAAGGA
GTCTGGTACACGATGATAAGGACGTTTTGTTGTCATTTTTCGACATTACC
TTCCCGTGTACGTATTCCTACATGCACGCGTGATACAAACATTGAGAATC
ATGAAGCAGCTGATTGCGTGTTGGCATACTCAGATCTACTCAGGGGCGAG
TTGCAGGAGGTCGACCAGTGGTTCAGTAAGTCTAGAAGTGTTACGCATCT
CCGCCCGACACCGAACATCTTCTACTGCTGTACTAGCCGTCACGGGCCGG
AATCTCGTGAACCGCGTCGCGAGGCAGAGGGTTTAGCTGAACCTTTCCCG
CCCCCGCCCCCGCATCCGAACAACCTCCAGGATCGTCCGTTAGACTGGAA
CGCTACGATGATCATCCCGAAGCAGCTGCGCCAGGTTTGGAAAGCTATGT
TCGTGGATGGCGACGGAAACTGTATGTGGCGTTCTGTCGGCAAGGCCTTG
TGGGATTCCGACCAGTTCTGGCCCCAGTTAAAGCTTGTGGTATTAGGATG
GGCCGCGGCCAACGCGGAAACACTTGTAGGAGACGAGGGTGTCCTTTTTC
GCTGTAAGAAATTCTACTCCCAGGATGTCGTTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1449:194130..195764+

>mRNA_F-serratus_M_contig1449.3176.1 ID=mRNA_F-serratus_M_contig1449.3176.1|Name=mRNA_F-serratus_M_contig1449.3176.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig1449:194130..195764+ (Fucus serratus male)
ATGTCCCGCCAAACGCGCAAGAAGACATCAGGATGTCCCGCCAAACGCGC
AAGAAGACATCAGGGGTAATGAGTGGGCCTGATGCCCTATTCCTTCTGGG
TCAGCTCCGTGACATGATAATTAGTACGACGCAAAAGATGGGAGGAGAAG
ACGCCATGGTGGGAAAGAATGCGATGGAGATACTCCGGCAGTGGTGCGTC
TCTAACTGTTCGTTCGAGGAAGTCTTCAACTCTGTCCGTGGGATGTTGCC
GGCCACCGCACCCCACAGGAATATGTTGGGTAATGAGTGGGCCTGATGCC
CTATTCCTTCTGGGTCAGCTCCGTGACATGATAATTAGTACGACGCAAAA
GATGGGAGGAGAAGACGCCATGGTGGGAAAGAATGCGATGGAGATACTCC
GGCAGTGGTGCGTCTCTAACTGTTCGTTCGAGGAAGTCTTCAACTCTGTC
CGTGGGATGTTGCCGGCCACCGCACCCCACAGGAATATGTTGGATCGTCC
GTTAGACTGGAACGCTACGATGATCATCCCGAAGCAGCTGCGCCAGGTTT
GGAAAGCTATGTTCGTGGATGGCGACGGAAACTGTATGTGGCGTTCTGTC
GGCAAGGCCTTGTGGGATTCCGACCAGTTCTGGCCCCAGTTAAAGCTTGT
GGTATTAGGATGGGCCGCGGCCAACGCGGAAACACTTGTAGGAGACGAGG
GTGTCCTTTTTCGCTGTAAGAAATTCTACTCCCAGGATGTCGTTCAAGAT
CGTCCGTTAGACTGGAACGCTACGATGATCATCCCGAAGCAGCTGCGCCA
GGTTTGGAAAGCTATGTTCGTGGATGGCGACGGAAACTGTATGTGGCGTT
CTGTCGGCAAGGCCTTGTGGGATTCCGACCAGTTCTGGCCCCAGTTAAAG
CTTGTGGTATTAGGATGGGCCGCGGCCAACGCGGAAACACTTGTAGGAGA
CGAGGGTGTCCTTTTTCGCTGTAAGAAATTCTACTCCCAGGATGTCGTTC
AA
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