mRNA_F-serratus_M_contig1449.3174.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 5.760e-16 Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 7 LLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
L+ E FD L SV+ KS FC S VE+LG ++ G+RP PSKI A+ +L +TV EVR +G+AGYLR FVP +S+
Sbjct: 291 LIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFST 371
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2TH63_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TH63_ARAVE) HSP 1 Score: 73.2 bits (178), Expect = 1.190e-13 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
+RE F L S L+VNL K EF V++LG V+ PDP KIE I +LSQ +T EVR L+G+A Y R ++P++SS
Sbjct: 23 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGFGRHSPDPEKIETIKRLSQPTTKREVRSLLGLANYYRDYIPNFSS 102
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2WDB2_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WDB2_ARAVE) HSP 1 Score: 73.9 bits (180), Expect = 1.520e-13 Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
+RE F L S L+VNL K EF V++LG V+ PDP KIE I +LSQ +T +EVR L+G+A Y R ++P++SS
Sbjct: 274 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGSGRHSPDPEKIETIKRLSQPTTKKEVRSLLGLANYYRDYIPNFSS 353
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2C7A8_ARAVE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2C7A8_ARAVE) HSP 1 Score: 73.9 bits (180), Expect = 1.570e-13 Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
+RE F L S L+VNL K EF V++LG V+ PDP KIE I +LSQ +T +EVR L+G+A Y R ++P++SS
Sbjct: 730 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGSGRHSPDPEKIETIKRLSQPTTKKEVRSLLGLANYYRDYIPNFSS 809
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2LKM1_ARAVE (RNA-directed DNA polymerase n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LKM1_ARAVE) HSP 1 Score: 73.9 bits (180), Expect = 1.590e-13 Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
+RE F L S L+VNL K EF V++LG V+ PDP KIE I +LSQ +T +EVR L+G+A Y R ++P++SS
Sbjct: 1195 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGSGRHSPDPEKIETIKRLSQPTTKKEVRSLLGLANYYRDYIPNFSS 1274
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.930e-13 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 46 LSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
LSVN K F + E+LGM+ID G+ P PSK++AI ++ + TVEE+R L+G+ GYLR+FVP+YS
Sbjct: 484 LSVNFAKCIFGAAPQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTLLGLTGYLRQFVPNYS 550
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5HLW4_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HLW4_9HEMI) HSP 1 Score: 70.9 bits (172), Expect = 5.100e-13 Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
+E L + + L Q+ +NL K F V++LG ++ IRP+P+KIEA+TQL TV E+R +G+A Y R+FVP +S
Sbjct: 15 MERLEKVLEVLTQAGFYLNLEKCSFIIKRVQYLGFEVEAGEIRPNPAKIEALTQLPPPKTVTELRQFIGLASYFRRFVPDFS 96
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: UPI000C254DBA (uncharacterized protein LOC111513503 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C254DBA) HSP 1 Score: 72.0 bits (175), Expect = 7.510e-13 Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 7 LLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
+LRE L ++ L++N K FC S + +LG V+ G+ DPSK+EAI Q++ +V +VR L+G+A + R+FVP++SS
Sbjct: 858 VLREVLTRLTRAGLTLNREKCHFCKSELRYLGYVVGAGGLMVDPSKVEAILQITAPKSVSDVRRLIGLASWYRRFVPNFSS 938
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5GT31_9HEMI (RNA-directed DNA polymerase n=3 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GT31_9HEMI) HSP 1 Score: 71.6 bits (174), Expect = 1.030e-12 Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 1 VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
V LL E D L Q+ L++N K E S + +LG V+D G+R P KI AI + T EVR +G+ GY R+FVPS+S
Sbjct: 760 VRLLNEVLDRLEQANLTINAEKCELFRSALTFLGFVVDASGLRAAPDKISAIIDFPRMKTQREVRRFLGICGYYRRFVPSFS 841
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A7G3ATJ7_LUTLO (Putative protease reverse transcriptase ribonuclease h integrase (Fragment) n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3ATJ7_LUTLO) HSP 1 Score: 68.6 bits (166), Expect = 1.270e-12 Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
V+ L+ + L +KL++N KS+FC + +LG V++ GI+ +P KIEAI + STV+EVR L+GM G+ R+F+ Y+
Sbjct: 50 VKYLKIVAERLKMAKLTINRDKSKFCVPELRYLGFVVNEEGIKIEPDKIEAIQNYPKPSTVKEVRQLLGMCGWNRRFIKDYA 131 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1449.3174.1 >prot_F-serratus_M_contig1449.3174.1 ID=prot_F-serratus_M_contig1449.3174.1|Name=mRNA_F-serratus_M_contig1449.3174.1|organism=Fucus serratus male|type=polypeptide|length=83bp VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEback to top mRNA from alignment at F-serratus_M_contig1449:66164..66412- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1449.3174.1 ID=mRNA_F-serratus_M_contig1449.3174.1|Name=mRNA_F-serratus_M_contig1449.3174.1|organism=Fucus serratus male|type=mRNA|length=249bp|location=Sequence derived from alignment at F-serratus_M_contig1449:66164..66412- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1449:66164..66412- >mRNA_F-serratus_M_contig1449.3174.1 ID=mRNA_F-serratus_M_contig1449.3174.1|Name=mRNA_F-serratus_M_contig1449.3174.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1449:66164..66412- (Fucus serratus male)back to top |