mRNA_F-serratus_M_contig1449.3174.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1449.3174.1
Unique NamemRNA_F-serratus_M_contig1449.3174.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.760e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    7 LLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
            L+ E FD L     SV+  KS FC S VE+LG ++   G+RP PSKI A+ +L   +TV EVR  +G+AGYLR FVP +S+
Sbjct:  291 LIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFST 371          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2TH63_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TH63_ARAVE)

HSP 1 Score: 73.2 bits (178), Expect = 1.190e-13
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
            +RE F  L  S L+VNL K EF    V++LG V+      PDP KIE I +LSQ +T  EVR L+G+A Y R ++P++SS
Sbjct:   23 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGFGRHSPDPEKIETIKRLSQPTTKREVRSLLGLANYYRDYIPNFSS 102          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2WDB2_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2WDB2_ARAVE)

HSP 1 Score: 73.9 bits (180), Expect = 1.520e-13
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
            +RE F  L  S L+VNL K EF    V++LG V+      PDP KIE I +LSQ +T +EVR L+G+A Y R ++P++SS
Sbjct:  274 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGSGRHSPDPEKIETIKRLSQPTTKKEVRSLLGLANYYRDYIPNFSS 353          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2C7A8_ARAVE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2C7A8_ARAVE)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-13
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
            +RE F  L  S L+VNL K EF    V++LG V+      PDP KIE I +LSQ +T +EVR L+G+A Y R ++P++SS
Sbjct:  730 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGSGRHSPDPEKIETIKRLSQPTTKKEVRSLLGLANYYRDYIPNFSS 809          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A4Y2LKM1_ARAVE (RNA-directed DNA polymerase n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LKM1_ARAVE)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-13
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   10 LRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
            +RE F  L  S L+VNL K EF    V++LG V+      PDP KIE I +LSQ +T +EVR L+G+A Y R ++P++SS
Sbjct: 1195 IREVFQTLQDSNLTVNLEKCEFGKKEVKFLGHVVGSGRHSPDPEKIETIKRLSQPTTKKEVRSLLGLANYYRDYIPNFSS 1274          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.930e-13
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   46 LSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
            LSVN  K  F  +  E+LGM+ID  G+ P PSK++AI ++ +  TVEE+R L+G+ GYLR+FVP+YS
Sbjct:  484 LSVNFAKCIFGAAPQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTLLGLTGYLRQFVPNYS 550          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5HLW4_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HLW4_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 5.100e-13
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
            +E L +  + L Q+   +NL K  F    V++LG  ++   IRP+P+KIEA+TQL    TV E+R  +G+A Y R+FVP +S
Sbjct:   15 MERLEKVLEVLTQAGFYLNLEKCSFIIKRVQYLGFEVEAGEIRPNPAKIEALTQLPPPKTVTELRQFIGLASYFRRFVPDFS 96          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: UPI000C254DBA (uncharacterized protein LOC111513503 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C254DBA)

HSP 1 Score: 72.0 bits (175), Expect = 7.510e-13
Identity = 34/81 (41.98%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    7 LLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS 249
            +LRE    L ++ L++N  K  FC S + +LG V+   G+  DPSK+EAI Q++   +V +VR L+G+A + R+FVP++SS
Sbjct:  858 VLREVLTRLTRAGLTLNREKCHFCKSELRYLGYVVGAGGLMVDPSKVEAILQITAPKSVSDVRRLIGLASWYRRFVPNFSS 938          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A6H5GT31_9HEMI (RNA-directed DNA polymerase n=3 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GT31_9HEMI)

HSP 1 Score: 71.6 bits (174), Expect = 1.030e-12
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
            V LL E  D L Q+ L++N  K E   S + +LG V+D  G+R  P KI AI    +  T  EVR  +G+ GY R+FVPS+S
Sbjct:  760 VRLLNEVLDRLEQANLTINAEKCELFRSALTFLGFVVDASGLRAAPDKISAIIDFPRMKTQREVRRFLGICGYYRRFVPSFS 841          
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Match: A0A7G3ATJ7_LUTLO (Putative protease reverse transcriptase ribonuclease h integrase (Fragment) n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3ATJ7_LUTLO)

HSP 1 Score: 68.6 bits (166), Expect = 1.270e-12
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIEAITQLSQTSTVEEVRVLVGMAGYLRKFVPSYS 246
            V+ L+   + L  +KL++N  KS+FC   + +LG V++  GI+ +P KIEAI    + STV+EVR L+GM G+ R+F+  Y+
Sbjct:   50 VKYLKIVAERLKMAKLTINRDKSKFCVPELRYLGFVVNEEGIKIEPDKIEAIQNYPKPSTVKEVRQLLGMCGWNRRFIKDYA 131          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1449.3174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LHQ7_9PHAE5.760e-1649.38Reverse transcriptase domain-containing protein (F... [more]
A0A4Y2TH63_ARAVE1.190e-1347.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2WDB2_ARAVE1.520e-1347.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2C7A8_ARAVE1.570e-1347.50RNA-directed DNA polymerase (Fragment) n=2 Tax=Ara... [more]
A0A4Y2LKM1_ARAVE1.590e-1347.50RNA-directed DNA polymerase n=3 Tax=Araneus ventri... [more]
A0A6H5LDH3_9PHAE2.930e-1352.24RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5HLW4_9HEMI5.100e-1341.46Reverse transcriptase domain-containing protein n=... [more]
UPI000C254DBA7.510e-1341.98uncharacterized protein LOC111513503 n=1 Tax=Lepti... [more]
A0A6H5GT31_9HEMI1.030e-1243.90RNA-directed DNA polymerase n=3 Tax=Nesidiocoris t... [more]
A0A7G3ATJ7_LUTLO1.270e-1241.46Putative protease reverse transcriptase ribonuclea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1449contigF-serratus_M_contig1449:66164..66412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog7668.SPU_012421-tr
Hectar predicted targeting categoryother localisation
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,COG2801@1,KOG0017@2759
COG Functional cat.E
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929430.8131764-CDS-F-serratus_M_contig1449:66163..664121622929430.8131764-CDS-F-serratus_M_contig1449:66163..66412Fucus serratus maleCDSF-serratus_M_contig1449 66164..66412 -
1690962848.5033739-CDS-F-serratus_M_contig1449:66163..664121690962848.5033739-CDS-F-serratus_M_contig1449:66163..66412Fucus serratus maleCDSF-serratus_M_contig1449 66164..66412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1449.3174.1prot_F-serratus_M_contig1449.3174.1Fucus serratus malepolypeptideF-serratus_M_contig1449 66164..66412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1449.3174.1

>prot_F-serratus_M_contig1449.3174.1 ID=prot_F-serratus_M_contig1449.3174.1|Name=mRNA_F-serratus_M_contig1449.3174.1|organism=Fucus serratus male|type=polypeptide|length=83bp
VELLRETFDCLPQSKLSVNLPKSEFCWSVVEWLGMVIDCFGIRPDPSKIE
AITQLSQTSTVEEVRVLVGMAGYLRKFVPSYSS
back to top

mRNA from alignment at F-serratus_M_contig1449:66164..66412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1449.3174.1 ID=mRNA_F-serratus_M_contig1449.3174.1|Name=mRNA_F-serratus_M_contig1449.3174.1|organism=Fucus serratus male|type=mRNA|length=249bp|location=Sequence derived from alignment at F-serratus_M_contig1449:66164..66412- (Fucus serratus male)
GTTGAACTACTCCGAGAAACCTTCGACTGCCTACCGCAAAGCAAGCTGTC GGTAAACCTACCGAAGTCGGAATTCTGTTGGTCGGTAGTCGAGTGGCTGG GGATGGTCATAGATTGCTTCGGCATCAGGCCTGATCCCAGCAAAATCGAG GCCATCACACAACTGTCCCAGACTTCAACGGTGGAAGAGGTACGAGTACT CGTCGGAATGGCAGGCTATCTCAGGAAGTTCGTTCCAAGCTATAGCTCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1449:66164..66412-

>mRNA_F-serratus_M_contig1449.3174.1 ID=mRNA_F-serratus_M_contig1449.3174.1|Name=mRNA_F-serratus_M_contig1449.3174.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1449:66164..66412- (Fucus serratus male)
GTTGAACTACTCCGAGAAACCTTCGACTGCCTACCGCAAAGCAAGCTGTC
GGTAAACCTACCGAAGTCGGAATTCTGTTGGTCGGTAGTCGAGTGGCTGG
GGATGGTCATAGATTGCTTCGGCATCAGGCCTGATCCCAGCAAAATCGAG
GCCATCACACAACTGTCCCAGACTTCAACGGTGGAAGAGGTACGAGTACT
CGTCGGAATGGCAGGCTATCTCAGGAAGTTCGTTCCAAGCTATAGCTCAG
TTGAACTACTCCGAGAAACCTTCGACTGCCTACCGCAAAGCAAGCTGTCG
GTAAACCTACCGAAGTCGGAATTCTGTTGGTCGGTAGTCGAGTGGCTGGG
GATGGTCATAGATTGCTTCGGCATCAGGCCTGATCCCAGCAAAATCGAGG
CCATCACACAACTGTCCCAGACTTCAACGGTGGAAGAGGTACGAGTACTC
GTCGGAATGGCAGGCTATCTCAGGAAGTTCGTTCCAAGCTATAGCTCA
back to top