mRNA_F-serratus_M_contig1449.3173.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: D7FP33_ECTSI (E3 ubiquitin-protein ligase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP33_ECTSI) HSP 1 Score: 267 bits (682), Expect = 8.110e-74 Identity = 178/410 (43.41%), Postives = 235/410 (57.32%), Query Frame = 3
Query: 405 VLTMTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWSSDSTEKAYAFMPVDIIIDKFEYTSIVEVDPVDGWAIIGSIGGVWQFVVLGFGLFFVYAEKQHPDMKMRNMKKTIYKPASVVRHRLSSSSSKSS--NQDIEVDALDEDLPAEWVKKERKNGSLYYLNIMTGAMQDRSPSDGIG-ANAAAEASAVPSRTHRLARIFQMPPRRQPTQPLDESQGAYRRSVREAHEYKGHSYGAKRLPPGWIERKDDRGRKYYMNTILKTTQWQRPTQ--RISTNRCTDVQAIDTPSAR----SHESFAMSSIKSNESKLDDQATGLDGSVRLCSSATKVPS--AAP---------RSSARTEIDET-----------------LPINWEKRVDQHGKIYFANNVTRKTQWTPPQT 1523
V+ +TEF GI DNG ++ +TYSQSTT+G N +W+ ++ E +A + VD+ I KFEYTSIVEVDPVDGW+IIG+IGG+WQFVV GFGLFFVY+ KQ PD KMRN +K++ KPAS+V RLS+ S+SS NQDIE+DA +EDLPA+WVKK+R NGS+YY + +TG Q +P D +G A +AS L RIF+ P S GA V H G G LPPGWI R DD G+ Y+ +T+ KTTQW+RPTQ R S+ + ID P A S+ S A +S +S+ S D G + + S S AAP SA+T LP NWE+R + + Y+ N VTR+++W P++
Sbjct: 249 VMGLTEFAGID-DNGNREERQRTYSQSTTTGTQNWYWTEETIELEFALIMVDVSIPKFEYTSIVEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVYSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSISNQDIELDASEEDLPADWVKKQRANGSIYYFHPLTGKKQS-TPPDALGSARGGPQASGT-----ALNRIFR---------PAHASSGA---GVSREH---GQLSGDP-LPPGWISRTDDSGKTYFQDTVSKTTQWERPTQHPRSSSVSSGRPEVIDMPMAHTRRGSNASSADNSRRSSSSHAHDHPHGRESAAGDPSPPPAWGSFPAAPSYKTAVYLSNRSAQTAAGXXXXXXXXXXXXXXXXGGPLPPNWERRTASNNRPYYVNTVTRESKWEAPRS 635
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: D7FP34_ECTSI (Similar to neural cell expressed, developmentally down-regulated 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP34_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.680e-71 Identity = 174/437 (39.82%), Postives = 229/437 (52.40%), Query Frame = 3
Query: 405 VLTMTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWSSDSTEKA-YAFMPVDIIIDKFEYTSIVEVDPVDGWAIIGSIGGVWQFVVLGFGLFFVYAEKQHPDMKMRNMKKTIYKPASVVRHRLS--SSSSKSSNQDIEVDALDEDLPAEWVKKERKNGSLYYLNIMTGAMQDRSPS--DGIGANAAAEASAVPSRTHRLARIFQMPPRRQPTQPLDESQGAYRRSVREAHEYKGHSYGAKRLPPGWIERKDDRGRKYYMNTILKTTQWQRPTQRISTNRCTD--VQAIDTPSARSHESFAMSSIKSNESKLD------------DQATGLDG---------------------------SVRLCSSA--------------------TKVPSAAPRSSARTEIDETLPINWEKRVDQHGKIYFANNVTRKTQWTPP 1517
VL +TEFTGI+ +NG K+ +++SQ+T +GV + WW ++ + + F V++ I KFE+TSI EVDPVDGW+IIG+IGG+WQFVV GFGLFFV++EKQ PD KMRN +K+I KPA RLS ++SS+SSNQD+E+DA +EDLP EWVKK+R NGS+YY N+MTGA Q SP+ D G SA P L RIFQ R A G LP GWIE D G+KYY++TI KTTQW+RP QR ++ D QA+D P ++S SS S+ A+G++G S R ++A T S A SA + +D LP NW KR + Y+ N+VT+KTQW P
Sbjct: 242 VLGVTEFTGIN-ENGNKKEKQRSFSQATITGVEHWWWGAEDYDSVEFGFFMVELSIGKFEFTSIEEVDPVDGWSIIGAIGGIWQFVVTGFGLFFVFSEKQSPDRKMRNFRKSIGKPAEFANKRLSILNTSSRSSNQDVEIDASEEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNHLDNAGG------SAPPPSNSALGRIFQ--------------------GNRSARPNSGP------LPAGWIEGTDGDGKKYYLDTINKTTQWERPLQREHSSGGPDRRPQAVDAPMSQSRRYSHASSDNSHXXXXXXXXXXXXXLAAASAASGVEGNPPAGGAPAPSRGAIPAAPSYRTAVYLSNRSSTAAASEGXGTTHPQQQWPAPAGTTSTDSRAGARSAASHVDAPLPQNWSKRTAPDNRTYYVNSVTKKTQWEAP 645
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: D8LQB8_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB8_ECTSI) HSP 1 Score: 192 bits (488), Expect = 7.650e-49 Identity = 103/204 (50.49%), Postives = 147/204 (72.06%), Query Frame = 3
Query: 402 QVLTMTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWSSDSTEKAYAFMPVDIIIDKFEYTSIVEVDPVDGWAIIGSIGGVWQFVVLGFGLFFVYAEKQHPDMKMRNMKKTIYKPASVVRHRLSSSSSKS-SNQDIEVDALDEDLPAEWVKKERKNGSLYYLNIMTGAMQDRSPSDGIGANAAAEASAVPSRTHR-LARIFQM 1007
QV+ MT+F IS +G KQ P +T++QS+TS +N W++ D E+ A + ++ I KFEYTSI +VDPVDGWAIIG+IGGVWQFVV+ FGLFFV++EKQ PD K+RN KK++ KPAS+V LSS++S+ + D+E+DA +EDLP WVK++RKNG+ YY N++TG ++ SP++ A+A P+ R +AR F++
Sbjct: 256 QVIEMTQFQPISTSSGQKQDPQRTFTQSSTSATVN-WYNPDFDEELAALL-FNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVNRHLSSANSRDPTTPDVEIDASNEDLPIGWVKRQRKNGTTYYYNLLTGDARENSPTE---AHAVVAVGVTPAPKRRSIARAFRI 454
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: A0A6H5JSI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI3_9PHAE) HSP 1 Score: 189 bits (481), Expect = 2.780e-47 Identity = 104/208 (50.00%), Postives = 145/208 (69.71%), Query Frame = 3
Query: 384 LGTGIVQVLTMTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWSSDSTEKAYAFMPVDIIIDKFEYTSIVEVDPVDGWAIIGSIGGVWQFVVLGFGLFFVYAEKQHPDMKMRNMKKTIYKPASVVRHRLSSSSSKSSN-QDIEVDALDEDLPAEWVKKERKNGSLYYLNIMTGAMQDRSPSDGIGANAAAEASAVPSRTHR-LARIF 1001
+GT V+ MT+F IS +G KQ P +T++QS+TS +N W++ D E+ A + ++ I KFEYTSI +VDPVDGWAIIG+IGGVWQFVV+ FGLFFV++EKQ PD K+RN KK++ KPAS+V+ LSS+SS+ D+E+D +EDLP WVK++RKNG+ YY N +TG ++ SP++ A+A P+ R +AR F
Sbjct: 281 VGTMSHMVIEMTQFQPISTSSGEKQDPQRTFTQSSTSATVN-WYNPDFNEELAALL-FNMFIPKFEYTSIEQVDPVDGWAIIGAIGGVWQFVVIAFGLFFVFSEKQLPDKKIRNFKKSVAKPASMVKRHLSSASSRDPTIPDVEIDTSNEDLPIGWVKRQRKNGTTYYYNPLTGDARENSPTE---AHAVVAVGVTPAPERRSIARAF 483
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: A0A6H5JZ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ12_9PHAE) HSP 1 Score: 177 bits (450), Expect = 6.840e-43 Identity = 143/420 (34.05%), Postives = 204/420 (48.57%), Query Frame = 3
Query: 405 VLTMTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWSSDSTEKAYAFMPVDIIIDKFEYTSIV------EVDPVDGWAIIGSI-GGVWQFVVLGFGLFFVYAEKQHPDMKMRNMKKTIYKPASVVRHRLSSSSSKSS--NQDIEVDALDEDLPAEWVKKERKNGSLYYLNIMTGAMQDRSPSDGIG-ANAAAEASAVPSRTHRLARIFQMPPRRQPTQPLDESQGAYRRSVREAHEYKGHSYGAKRLPPGWIERKDDRGRKYYMNTILKTTQWQRPTQR-----ISTNRCTDVQAIDTPSARSHESFAMSSIKSNESKLDDQATGL----DGSVRLCSSATKVPSAAPRSSARTEIDET----------------------------LPINWEKRVDQHGKIYFANNVTRKTQWTPPQT 1523
V+ +TEF GI DNG ++ +TYSQSTT+G N +W+ ++ + +A M VD+ I KFEYT I + V W + +FVV GFGLFFV++ KQ PD KMRN +K++ KPAS+V RLS+ S+SS NQDIE+D+ +EDLPA+WVKK+R NGS+YY + +TG Q +P D +G A +AS L +IF + Q DE +R S PP E +D T+ KTTQW+RPTQR +S+ R Q +D P A + + SS + DG+ S + S S RT + + LP NWE+R+ + + Y+ N VTR+++W P++
Sbjct: 272 VVGLTEFAGID-DNGNREERQRTYSQSTTTGTQNWYWTDETYDFEFALMIVDVSIPKFEYTFIAVSMNQRSKEEVSPWFALPPFKDSAAEFVVTGFGLFFVFSVKQSPDRKMRNFRKSVTKPASIVNKRLSTLGSRSSTSNQDIELDSSEEDLPADWVKKQRANGSIYYFHPLTGKKQS-TPPDALGSAGGGPQASGTV-----LNQIFHVS---QYALVRDERPTLFRHS-----------------PPMGEEIRD---------TVNKTTQWERPTQRPRSSSVSSGR---PQVVDMPIAHTRRGSSTSSTNNPXXXXXXXXXXXXXRRDGAAEDPSPPPALGSIPAAPSYRTAVHLSNRSAHTAAAXXXXXXXXXXXXXXXXXGPLPPNWERRIASNDRPYYVNTVTRESKWEDPRS 652
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: A0A6H5JBE8_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE8_9PHAE) HSP 1 Score: 166 bits (419), Expect = 1.290e-38 Identity = 138/393 (35.11%), Postives = 191/393 (48.60%), Query Frame = 3
Query: 405 VLTMTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWS-SDSTEKAYAFMPVDIIIDKFEYTSIVEVDPVDGWAIIGSIGGVWQFVVLGFGLFFVYAEKQHPDMKMRNMKKTIYKPASVVRHRLSSSS----SKSSNQDIEVDALDEDLPAEWVKKERKNGSLYYLNIMTGAMQDRSPSDGIGANAAAEASAVPSRTHRLARIFQMPPRRQPTQPLDESQGAYRRSVREAHEY-----------------------KGHS---YGAKRLPPGWIERKDDRGRKYYMNTILKTTQWQRPTQR--ISTNRCTDVQAIDTPSARSHESFAMSSIKSNESKLDDQATGLDGSVRLCSSATKVPSAAPRSSARTEIDETLPINWEKRVDQHGKIYFAN 1484
VL++TEFTGI+ NG K+ +++SQ+ +GV + WW D + F V++ I KFE+TSI EV +FVV GFGLFFV++E+Q PD + RN +K+I KPA +RLSS + S + NQD+E+DA EDLP EWVKK+R NGS+YY N+MTGA Q SP+ A AA P L RIFQ+ + + + + S R + KG+ + LP GW+E G+ YY++TI KTTQW+RP QR S QA+D P ++S SS S+ S QA S+ S+A+ V P A +P R +Y +N
Sbjct: 310 VLSLTEFTGIN-KNGNKEEKERSFSQTAITGVEHWWWGYEDYNSVEFGFFMVELSIGKFEFTSI-EV----------------EFVVTGFGLFFVFSERQSPDRRFRNFRKSIRKPAEFAGNRLSSLNISFRSSNRNQDVEIDASGEDLPVEWVKKQRPNGSIYYFNVMTGAKQTASPNRLDDAGGAAP----PPSNSALRRIFQV------RKYILSTSFLFHLSCRNKERWTLSHLGSWDLSAPNVACFVLISLKGNRSARLNSGPLPAGWVEGTGGNGKNYYLDTINKTTQWERPLQREHSSGGPHRRPQAVDEPISQSRWYSQASSGNSHHS-TSSQAPHHRPSLVSASAASGVEDNPPAGDAPAPSLGAIPAAPSYRT----AVYLSN 669
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: UPI001E1DFCF7 (E3 ubiquitin-protein ligase NEDD4-like isoform X6 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFCF7) HSP 1 Score: 84.7 bits (208), Expect = 5.950e-13 Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 3
Query: 1116 LPPGWIERKDDRGRKYYMNTILKTTQWQRPTQRISTNRCTDVQAIDTPSARSHE---SFAMSSIKSNESKLDDQATGLDGSVRLCSSATKVPSAAPRSSARTEIDETLPINWEKRVDQHGKIYFANNVTRKTQWTPP 1517
LPPGW E++D GR+YY+N + TQW RP+ S D + S RSH S SS+ +ES + D +T D S SS T+V S +SA T LP WE+RVD +G+ Y+ N+V RKTQW P
Sbjct: 55 LPPGWEEKRDATGRRYYVNHTSRRTQWARPSPGAS-----DTGTSTSESTRSHHPRSSRTGSSVAQSESTISDDST-YDNSHSE-SSRTRVQSFG--ASAMTT-PSRLPAGWEERVDANGRTYYVNHVHRKTQWERP 181
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: A0A1I7ZM76_9BILA (E3 ubiquitin-protein ligase n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7ZM76_9BILA) HSP 1 Score: 80.9 bits (198), Expect = 9.480e-12 Identity = 48/146 (32.88%), Postives = 71/146 (48.63%), Query Frame = 3
Query: 1116 LPPGWIERKDDRGRKYYMNTILKTTQWQRPTQRISTNRCTDVQAIDTPSARSHESFAMSSIKSNESKLD--DQATGLDGSVRLC--------SSATKVPSAAPRSSARTEIDETLPINWEKRVDQHGKIYFANNVTRKTQWTPPQT 1523
LP GW ER+D GR +Y+N +L+TTQW+RP Q++ R H+ + S ES D + +D +R S AT +PSAA S + E LP WE + +G+ +F ++ RKT WT P++
Sbjct: 195 LPEGWEERQDANGRTFYVNHVLRTTQWERP----DLTGAAAEQSVREDQIRRHQLEQRYMVTSEESPTDVREHLNAIDNGMRALFMGPMNGNSCATSIPSAASSRSLDSATTEPLPDGWEMQTAPNGRRFFIDHKNRKTTWTDPRS 336
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: A0A4V6A673_STECR (E3 ubiquitin-protein ligase n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V6A673_STECR) HSP 1 Score: 73.6 bits (179), Expect = 1.720e-9 Identity = 47/152 (30.92%), Postives = 70/152 (46.05%), Query Frame = 3
Query: 1116 LPPGWIERKDDRGRKYYMNTILKTTQWQRPTQRISTNRCTDVQAIDTPSARSHESFAMSSIKSNES------KLDDQATGLDGSVRL----------CSSATKVPSAAPRSSARTEIDETLPINWEKRVDQHGKIYFANNVTRKTQWTPPQT 1523
LP GW ER+D GR +Y+N IL+TTQWQRP + Q++ R H+ + S ES + D +D +R A +P+A S + E LP WE +V +G+ +F ++ RKT WT P++
Sbjct: 197 LPEGWEERQDANGRTFYVNHILRTTQWQRPDVSEPIGETAE-QSVREDQMRRHQLEQRYIVTSEESPERVNGNVRDHVDAIDDRMRTLFLNAFQNNGAPGANSMPTAVSSRSLDSATAERLPEGWEMQVAPNGRRFFIDHKNRKTTWTDPRS 347
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Match: UPI0015CF9030 (E3 ubiquitin-protein ligase NEDD4-like isoform X5 n=2 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015CF9030) HSP 1 Score: 70.5 bits (171), Expect = 1.710e-8 Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 3
Query: 1116 LPPGWIERKDDRGRKYYMNTILKTTQWQRPTQRISTNRCTDVQAIDTPSARSHESFA-MSSIKSNESKLDDQATGLDGSVRLCS--------SATKVPSAAPRSSARTEIDET---LPINWEKRVDQHGKIYFANNVTRKTQWTPPQ 1520
LPPGW ERKD +GR YY+N ++T W RP + + + + TPS+ +H S M +S S +T L+G+ + S S + P +P SS +++ T LP WE R+ +G+ +F ++ +R T W P+
Sbjct: 403 LPPGWEERKDTKGRTYYVNHNNRSTTWTRPILQHTEDGASSSPVASTPSSGAHLSEPQMRRPRSLSSPTVTLSTPLEGANNMPSQRAVKDTMSNPQSPQPSPYSSPKSQHKPTQSFLPPGWEMRIAPNGRPFFIDHNSRTTTWEDPR 549 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1449.3173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1449.3173.1 >prot_F-serratus_M_contig1449.3173.1 ID=prot_F-serratus_M_contig1449.3173.1|Name=mRNA_F-serratus_M_contig1449.3173.1|organism=Fucus serratus male|type=polypeptide|length=371bp MTEFTGISVDNGAKQRPTKTYSQSTTSGVMNGWWSSDSTEKAYAFMPVDIback to top mRNA from alignment at F-serratus_M_contig1449:40719..49460+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1449.3173.1 ID=mRNA_F-serratus_M_contig1449.3173.1|Name=mRNA_F-serratus_M_contig1449.3173.1|organism=Fucus serratus male|type=mRNA|length=8742bp|location=Sequence derived from alignment at F-serratus_M_contig1449:40719..49460+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1449:40719..49460+ >mRNA_F-serratus_M_contig1449.3173.1 ID=mRNA_F-serratus_M_contig1449.3173.1|Name=mRNA_F-serratus_M_contig1449.3173.1|organism=Fucus serratus male|type=CDS|length=2226bp|location=Sequence derived from alignment at F-serratus_M_contig1449:40719..49460+ (Fucus serratus male)back to top |