mRNA_F-serratus_M_contig1448.3172.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1448.3172.1
Unique NamemRNA_F-serratus_M_contig1448.3172.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1448.3172.1 vs. uniprot
Match: D7FR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR75_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.150e-56
Identity = 102/185 (55.14%), Postives = 120/185 (64.86%), Query Frame = 2 
Query:  404 RVEYEAYQCLRTSPSGHYCEAWNGNVTARDEIEVVACECKQEWQGKDVCSYWECEELGLNTCASSVNSWWCNLGVSVRVGGGIGFLGVAVMCYSI-IYGAIASESPRFLCDDQSFDATLCFFVGGVCGLVWCCLWAVGVVIWGGVDGAKYVGIMWGVPIFATLSFVVVRSR---IIMIRGRDNEE 946
            R E+E Y+C R SPSGHYCEAWNGNVTA DE E+V+CEC   W G  VCS+WECEELGL+TC SS  + WC+LGVS+ VGGGIG LGV V+CY I + G I SE             T    +G   G VWC  W+ GVVIWGG  GA YVGIMWGVPI   L+ VV   R   +  +R +D +E
Sbjct:  184 RAEFEDYRCQRPSPSGHYCEAWNGNVTASDEFEIVSCECLANWHGDQVCSFWECEELGLSTC-SSAGASWCDLGVSIGVGGGIGLLGVLVICYGIGLVGRIDSEGQ---------SDTTAGLMGIALGTVWCLSWSSGVVIWGGEAGATYVGIMWGVPI--VLAAVVAAFRCFAVYRVRTKDEQE 356
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BLAST of mRNA_F-serratus_M_contig1448.3172.1 vs. uniprot
Match: D7G428_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G428_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 7.990e-47
Identity = 79/154 (51.30%), Postives = 103/154 (66.88%), Query Frame = 1 
Query:    4 GELPDFPMSFGEMKVAAGYYTADGKYLGGLPKADTLSREIYDC--QDYYFPE---------NGTANATLCLQWEANEAAGDAFQVGECECRSVTAEAYCSIWSCNQ------------ECYVESSTDAVLCECDLENESGLFCNAWSCKQIDSN 396
            G  PD+PM+F +MKV AGYYT DGKYLGG+PKAD +S+EIY+C    Y++P          +G   AT C++W A+E+AG  FQ G CEC S+  E YCS W+CNQ             C V ++TDAVLC+CDL+  SGL+C++WSCKQIDS+
Sbjct:   51 GVYPDYPMTFADMKVLAGYYTEDGKYLGGIPKADPVSKEIYECAADTYFYPSGNDTVTDSTDGKDEATACMEWRADESAGGVFQKGTCECTSIDNENYCSAWTCNQVKEEEDCNSSGSNCVVSTNTDAVLCQCDLDVPSGLYCDSWSCKQIDSD 204
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BLAST of mRNA_F-serratus_M_contig1448.3172.1 vs. uniprot
Match: A0A6H5JXC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC2_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.800e-27
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:    1 RGELPDFPMSFGEMKVAAGYYTADGKYLGGLPKADTLSREIYDC--QDYYFPENGTAN-----ATLCLQWEANEAAGDAFQVGECECRSVTAEAYCSIWSCNQ------------ECYVESSTDAVLCECDLENESGLFCNAWSCKQIDS 393
            RGE PD+PM+F +MKV AGYYT DGK             EIY+C    +++P +  AN     AT C++W A+E+AG                 YCS W C Q             C+V ++T++VLC+CDLE  SGL+C++WSCKQIDS
Sbjct:   26 RGEFPDYPMTFTDMKVLAGYYTEDGK-------------EIYECATDGFFYPTDTMANSTDGEATACMEWRADESAG-----------------YCSAWICIQVAEVEECNSDGDSCFVSTNTNSVLCQCDLETASGLYCDSWSCKQIDS 145
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3172.1 vs. uniprot
Match: A0A6H5JJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-16
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 2 
Query:  605 SWWCNLGVSVRVGGGIGFLGVAVMCYSIIYGAIASESPRFLCDDQSFDATLCFFVGGVCGLVWCCLWAVGVVIWGGVDGAKYVGIMWGVPIFATLSFVVVRSR---IIMIRGRDNEE 946
            S WC+LGVS+ VGGG G LGV ++CY I  G +   + R   ++ +        +G   G VWC  W+ GVVIW G  GA YVGIMWGVPI   L+ VV  SR   +  +R +D +E
Sbjct:    8 SSWCDLGVSIGVGGGKGLLGVLMICYGI--GLVGRTNSRGQLNNAAG------LMGIALGTVWCLSWSSGVVIWEGEVGATYVGIMWGVPI--VLAAVVAASRCFVVYRVRTKDEQE 114
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1448.3172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR75_ECTSI1.150e-5655.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G428_ECTSI7.990e-4751.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXC2_9PHAE2.800e-2741.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJI2_9PHAE1.810e-1644.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1448contigF-serratus_M_contig1448:61178..62153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size946
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1448.3172.1prot_F-serratus_M_contig1448.3172.1Fucus serratus malepolypeptideF-serratus_M_contig1448 61629..62129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929430.3551474-UTR-F-serratus_M_contig1448:61177..616281622929430.3551474-UTR-F-serratus_M_contig1448:61177..61628Fucus serratus maleUTRF-serratus_M_contig1448 61178..61628 -
1690962848.3253279-UTR-F-serratus_M_contig1448:61177..616281690962848.3253279-UTR-F-serratus_M_contig1448:61177..61628Fucus serratus maleUTRF-serratus_M_contig1448 61178..61628 -
1622929430.49446-UTR-F-serratus_M_contig1448:62129..621531622929430.49446-UTR-F-serratus_M_contig1448:62129..62153Fucus serratus maleUTRF-serratus_M_contig1448 62130..62153 -
1690962848.3562624-UTR-F-serratus_M_contig1448:62129..621531690962848.3562624-UTR-F-serratus_M_contig1448:62129..62153Fucus serratus maleUTRF-serratus_M_contig1448 62130..62153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929430.4640594-CDS-F-serratus_M_contig1448:61628..618351622929430.4640594-CDS-F-serratus_M_contig1448:61628..61835Fucus serratus maleCDSF-serratus_M_contig1448 61629..61835 -
1690962848.333891-CDS-F-serratus_M_contig1448:61628..618351690962848.333891-CDS-F-serratus_M_contig1448:61628..61835Fucus serratus maleCDSF-serratus_M_contig1448 61629..61835 -
1622929430.4820344-CDS-F-serratus_M_contig1448:61865..621291622929430.4820344-CDS-F-serratus_M_contig1448:61865..62129Fucus serratus maleCDSF-serratus_M_contig1448 61866..62129 -
1690962848.345237-CDS-F-serratus_M_contig1448:61865..621291690962848.345237-CDS-F-serratus_M_contig1448:61865..62129Fucus serratus maleCDSF-serratus_M_contig1448 61866..62129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1448.3172.1

>prot_F-serratus_M_contig1448.3172.1 ID=prot_F-serratus_M_contig1448.3172.1|Name=mRNA_F-serratus_M_contig1448.3172.1|organism=Fucus serratus male|type=polypeptide|length=157bp
MSFGEMKVAAGYYTADGKYLGGLPKADTLSREIYDCQDYYFPENGTANAT
LCLQWEANEAAGDAFQVGECECRSVTAEAYCSIWSCNQECYVESSTDAVL
CECDLENESGLFCNAWSCKQIDSNQIKGGVRSVPVFAHLALWPLLRGMER
KRHCQG*
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mRNA from alignment at F-serratus_M_contig1448:61178..62153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1448.3172.1 ID=mRNA_F-serratus_M_contig1448.3172.1|Name=mRNA_F-serratus_M_contig1448.3172.1|organism=Fucus serratus male|type=mRNA|length=976bp|location=Sequence derived from alignment at F-serratus_M_contig1448:61178..62153- (Fucus serratus male)
CGCGGCGAGCTTCCAGACTTCCCGATGAGCTTTGGGGAGATGAAAGTGGC
AGCGGGATACTACACGGCCGACGGAAAGTACCTCGGTGGCCTCCCCAAGG
CCGACACTCTGAGTCGAGAGATCTACGACTGCCAGGACTATTATTTTCCA
GAGAACGGGACGGCGAACGCGACTCTTTGCTTGCAGTGGGAGGCCAATGA
AGCTGCCGGAGATGCATTCCAAGTGGGCGAGTGCGAATGCAGGTCTGTAA
CAGCTGAGGCGTACTGTTCCATTTGGTCCTGTAACCAGGTGAAAACGGAG
GTGAACTGCGTCCATGAGGAGTGTTACGTCGAAAGCAGCACGGACGCCGT
CCTCTGTGAGTGCGATCTTGAAAACGAGTCTGGACTTTTCTGCAACGCAT
GGTCGTGCAAGCAGATCGACTCCAACCAAATCAAGGGTGGAGTACGAAGC
GTACCAGTGTTTGCGCACCTCGCCCTCTGGCCACTACTGCGAGGCATGGA
ACGGAAACGTCACTGCCAGGGATGAGATTGAAGTCGTCGCATGCGAGTGC
AAGCAGGAGTGGCAAGGTAAAGACGTCTGCTCGTACTGGGAATGCGAAGA
GCTCGGACTCAACACTTGTGCCAGCTCCGTAAACAGCTGGTGGTGTAACT
TGGGTGTATCAGTGCGCGTTGGAGGAGGGATCGGGTTCCTCGGTGTCGCC
GTGATGTGCTACAGCATAATATATGGTGCTATTGCTTCCGAATCCCCCCG
CTTCTTGTGCGACGATCAAAGCTTCGATGCAACATTATGTTTCTTTGTCG
GTGGAGTGTGTGGCCTCGTGTGGTGCTGCCTGTGGGCAGTCGGCGTAGTT
ATTTGGGGCGGGGTGGACGGAGCCAAGTATGTTGGCATTATGTGGGGAGT
TCCCATTTTCGCGACGCTTTCCTTCGTTGTCGTGCGCTCCAGAATTATTA
TGATACGAGGTAGGGACAACGAAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1448:61178..62153-

>mRNA_F-serratus_M_contig1448.3172.1 ID=mRNA_F-serratus_M_contig1448.3172.1|Name=mRNA_F-serratus_M_contig1448.3172.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig1448:61178..62153- (Fucus serratus male)
ATGAGCTTTGGGGAGATGAAAGTGGCAGCGGGATACTACACGGCCGACGG
AAAGTACCTCGGTGGCCTCCCCAAGGCCGACACTCTGAGTCGAGAGATCT
ACGACTGCCAGGACTATTATTTTCCAGAGAACGGGACGGCGAACGCGACT
CTTTGCTTGCAGTGGGAGGCCAATGAAGCTGCCGGAGATGCATTCCAAGT
GGGCGAGTGCGAATGCAGGTCTGTAACAGCTGAGGCGTACTGTTCCATTT
GGTCCTGTAACCAGATGAGCTTTGGGGAGATGAAAGTGGCAGCGGGATAC
TACACGGCCGACGGAAAGTACCTCGGTGGCCTCCCCAAGGCCGACACTCT
GAGTCGAGAGATCTACGACTGCCAGGACTATTATTTTCCAGAGAACGGGA
CGGCGAACGCGACTCTTTGCTTGCAGTGGGAGGCCAATGAAGCTGCCGGA
GATGCATTCCAAGTGGGCGAGTGCGAATGCAGGTCTGTAACAGCTGAGGC
GTACTGTTCCATTTGGTCCTGTAACCAGGAGTGTTACGTCGAAAGCAGCA
CGGACGCCGTCCTCTGTGAGTGCGATCTTGAAAACGAGTCTGGACTTTTC
TGCAACGCATGGTCGTGCAAGCAGATCGACTCCAACCAAATCAAGGGTGG
AGTACGAAGCGTACCAGTGTTTGCGCACCTCGCCCTCTGGCCACTACTGC
GAGGCATGGAACGGAAACGTCACTGCCAGGGATGAGAGTGTTACGTCGAA
AGCAGCACGGACGCCGTCCTCTGTGAGTGCGATCTTGAAAACGAGTCTGG
ACTTTTCTGCAACGCATGGTCGTGCAAGCAGATCGACTCCAACCAAATCA
AGGGTGGAGTACGAAGCGTACCAGTGTTTGCGCACCTCGCCCTCTGGCCA
CTACTGCGAGGCATGGAACGGAAACGTCACTGCCAGGGATGA
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