mRNA_F-serratus_M_contig1448.3171.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1448.3171.1
Unique NamemRNA_F-serratus_M_contig1448.3171.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: D7G430_ECTSI (Plastid thioredoxin M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G430_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.200e-36
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   25 FGRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVRYWL 264
            +  WCGPC MMS+ L  VGPKMKDE++IFKID+DKYP+LM+KFGVNGLPTL+LFKEGKEL R+EGV+P E L+Q++RY+L
Sbjct:   95 YATWCGPCSMMSDNLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAEMLIQELRYFL 174
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: A0A6H5JZH9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH9_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.150e-34
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   25 FGRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVRYWL 264
            +  WCGPC MMSE L  VGPKMKDE++IFKID+DKYP+LM+KFGVNGLPTL+LFKEGKEL R+EGV+P E L+QQ+RY+L
Sbjct:  728 YATWCGPCSMMSENLAVVGPKMKDELKIFKIDTDKYPNLMSKFGVNGLPTLVLFKEGKELTRMEGVMPAEMLIQQLRYFL 807
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: UPI0016832F16 (thioredoxin n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI0016832F16)

HSP 1 Score: 100 bits (250), Expect = 7.180e-26
Identity = 43/83 (51.81%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   10 PLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVR 255
            P+  +F   WCGPC+MM+  LE+V  +MKD +RI K+D+DKYP+L +++GV  LPTL+LFK+G+ +++IEGVLP E L+Q+++
Sbjct:   20 PVLVDFYATWCGPCQMMANILEQVNGQMKDRLRIVKVDTDKYPALASQYGVQALPTLVLFKQGQAIDKIEGVLPSERLIQRLQ 102
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: UPI001F003FC8 (thioredoxin n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F003FC8)

HSP 1 Score: 100 bits (250), Expect = 7.180e-26
Identity = 46/86 (53.49%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:   10 PLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVRYWL 264
            P+  +F   WCGPC+MM++ LE+V   +KD++RI KIDSDKYP L T++ ++ LPTL+LFK+GK + RIEGVL  E L+Q++R +L
Sbjct:   20 PVLVDFYATWCGPCQMMAKILEQVNVLLKDQLRIVKIDSDKYPELATQYEIHALPTLVLFKQGKPVERIEGVLRAEQLIQRLRSFL 105
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: K8GE81_9CYAN (Thioredoxin n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=K8GE81_9CYAN)

HSP 1 Score: 99.8 bits (247), Expect = 2.370e-25
Identity = 45/83 (54.22%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   10 PLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVR 255
            P+  +F   WCGPC+MM++ L++V  +MK ++RI KID+DKYPSL ++  V  LPTL+LFK+GK ++RIEGV+ PE L+Q VR
Sbjct:   20 PVLVDFYATWCGPCQMMAKILDQVNAQMKQQVRIVKIDTDKYPSLASQHQVQALPTLVLFKQGKPIDRIEGVVAPEQLIQWVR 102
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: UPI000B59C71D (thioredoxin n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B59C71D)

HSP 1 Score: 98.2 bits (243), Expect = 8.330e-25
Identity = 43/83 (51.81%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   10 PLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVR 255
            P+  +F   WCGPC+MM+  LE+V  +M D ++I KID+DKYP++ ++ GV  LPTL+LFK+G+E++RIEGVLP E L+Q+++
Sbjct:   20 PVLVDFYATWCGPCQMMASILEQVNRQMGDRLKIVKIDTDKYPTVASQHGVQALPTLVLFKQGQEIDRIEGVLPSERLIQRLQ 102
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: A0A2T1C185_9CYAN (Thioredoxin n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C185_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 3.380e-24
Identity = 39/87 (44.83%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    7 EPLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVRYWL 264
            +P+  +F   WCGPC MM++ LE++   +K  I++ K+D+DKYP + +++G+  LPTL+LFK G+ +++IEGVLPPE L+Q+++ +L
Sbjct:   19 QPVLVDFYATWCGPCHMMAKILEEINGYLKSRIKVVKVDTDKYPVISSQYGIAALPTLVLFKNGQPVDKIEGVLPPEQLIQRLQSYL 105
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: UPI001CA5F791 (thioredoxin n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA5F791)

HSP 1 Score: 96.7 bits (239), Expect = 3.380e-24
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   10 PLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVR 255
            P+  +F   WCGPC+MM+  LE+V  +M  ++RI KID++KYP L + + V+ LPTL+LFK G+ + RIEGVLPPE L+Q++R
Sbjct:   20 PVLVDFYATWCGPCQMMATILEQVNAQMNHQLRIVKIDTEKYPQLASTYQVHALPTLVLFKHGQPVERIEGVLPPEQLIQRLR 102
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: A0A7C3VKG2_9CYAN (Thioredoxin n=1 Tax=Planktothricoides sp. SpSt-374 TaxID=2282167 RepID=A0A7C3VKG2_9CYAN)

HSP 1 Score: 96.7 bits (239), Expect = 3.580e-24
Identity = 39/83 (46.99%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   10 PLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVR 255
            P+  +F   WCGPC+MM+  LE+V  +MK++I++ KID+DKYP L +++ ++ LPTL+LFK+G  + R EG +P EPL+Q+++
Sbjct:   20 PVLVDFYANWCGPCRMMAPVLEEVNSRMKNQIKVVKIDTDKYPELASQYHIHALPTLVLFKQGAPVQRFEGFMPSEPLVQELQ 102
[Close]
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Match: A0A2T1LXK9_9CHRO (Thioredoxin n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1LXK9_9CHRO)

HSP 1 Score: 95.9 bits (237), Expect = 6.810e-24
Identity = 42/85 (49.41%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 AEPLFTNF-GRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTKFGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVR 255
            A P+  +F   WCGPC+MMS  LE+VG  +K+ ++I KID+DKYP+L T++ ++ LPTL+LFK G+ + RIEGV+  + L+QQ++
Sbjct:   18 ATPVLVDFYATWCGPCQMMSPILEQVGAYLKNRVQIVKIDTDKYPNLATQYQIHALPTLVLFKNGQPIERIEGVVQAQQLIQQLQ 102
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1448.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G430_ECTSI2.200e-3671.25Plastid thioredoxin M n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JZH9_9PHAE2.150e-3473.75Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
UPI0016832F167.180e-2651.81thioredoxin n=1 Tax=Leptolyngbya sp. FACHB-711 Tax... [more]
UPI001F003FC87.180e-2653.49thioredoxin n=1 Tax=Leptodesmis sichuanensis TaxID... [more]
K8GE81_9CYAN2.370e-2554.22Thioredoxin n=1 Tax=Leptolyngbyaceae cyanobacteriu... [more]
UPI000B59C71D8.330e-2551.81thioredoxin n=1 Tax=Leptolyngbya ohadii TaxID=1962... [more]
A0A2T1C185_9CYAN3.380e-2444.83Thioredoxin n=1 Tax=Merismopedia glauca CCAP 1448/... [more]
UPI001CA5F7913.380e-2451.81thioredoxin n=1 Tax=Leptothermofonsia sichuanensis... [more]
A0A7C3VKG2_9CYAN3.580e-2446.99Thioredoxin n=1 Tax=Planktothricoides sp. SpSt-374... [more]
A0A2T1LXK9_9CHRO6.810e-2449.41Thioredoxin n=1 Tax=Aphanothece hegewaldii CCALA 0... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1448contigF-serratus_M_contig1448:20498..21094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7G430
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0030234,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
EggNOG free text desc.glycerol ether metabolic process
EggNOG OGsCOG0526@1,KOG0910@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929430.3066103-CDS-F-serratus_M_contig1448:20497..206111622929430.3066103-CDS-F-serratus_M_contig1448:20497..20611Fucus serratus maleCDSF-serratus_M_contig1448 20498..20611 +
1690962848.3054385-CDS-F-serratus_M_contig1448:20497..206111690962848.3054385-CDS-F-serratus_M_contig1448:20497..20611Fucus serratus maleCDSF-serratus_M_contig1448 20498..20611 +
1622929430.318977-CDS-F-serratus_M_contig1448:20944..210941622929430.318977-CDS-F-serratus_M_contig1448:20944..21094Fucus serratus maleCDSF-serratus_M_contig1448 20945..21094 +
1690962848.3165894-CDS-F-serratus_M_contig1448:20944..210941690962848.3165894-CDS-F-serratus_M_contig1448:20944..21094Fucus serratus maleCDSF-serratus_M_contig1448 20945..21094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1448.3171.1prot_F-serratus_M_contig1448.3171.1Fucus serratus malepolypeptideF-serratus_M_contig1448 20498..21094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1448.3171.1

>prot_F-serratus_M_contig1448.3171.1 ID=prot_F-serratus_M_contig1448.3171.1|Name=mRNA_F-serratus_M_contig1448.3171.1|organism=Fucus serratus male|type=polypeptide|length=88bp
MAEPLFTNFGRWCGPCKMMSETLEKVGPKMKDEIRIFKIDSDKYPSLMTK
FGVNGLPTLILFKEGKELNRIEGVLPPEPLMQQVRYWL
back to top

mRNA from alignment at F-serratus_M_contig1448:20498..21094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1448.3171.1 ID=mRNA_F-serratus_M_contig1448.3171.1|Name=mRNA_F-serratus_M_contig1448.3171.1|organism=Fucus serratus male|type=mRNA|length=597bp|location=Sequence derived from alignment at F-serratus_M_contig1448:20498..21094+ (Fucus serratus male)
ATGGCCGAACCACTATTTACAAACTTCGGAAGGTGGTGCGGACCATGCAA
GATGATGTCGGAGACTCTGGAGAAGGTGGGACCCAAAATGAAGGACGAAA
TACGGATATTCAAGGTGAAATGATAGCGATACGAGGTAGAAAATAATTGG
ACTTGCGAGGATTGGTTTATGTGAACGACACCCGTTGTCGCGTACGAAGT
ACTTCGGTATGGACGTGCAGATGTCGGCTATGACGCATTAACGTACGAAG
AGAGATCATGAAGTAGCTTGTTATCTTAAACAGATGTATTACCAGTATAC
CGCTAGATGTGTTCGATGGGCAGCTCACATGGCAGAGCACATGTCACGGC
AAGGGTTGTCAGAGGTTTATCTCGTACAATCGCGTGCCCTCAACCTTCCG
CATGCGTTCTCAACATTTCCCCGTGCAAACACAATGATAACTGGCAGATT
GATTCAGACAAGTACCCCTCTCTAATGACCAAGTTTGGCGTCAACGGGCT
ACCGACGCTCATCCTTTTCAAGGAAGGAAAAGAGTTGAATCGGATAGAAG
GCGTTCTGCCGCCCGAGCCACTCATGCAGCAAGTGCGTTACTGGCTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1448:20498..21094+

>mRNA_F-serratus_M_contig1448.3171.1 ID=mRNA_F-serratus_M_contig1448.3171.1|Name=mRNA_F-serratus_M_contig1448.3171.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig1448:20498..21094+ (Fucus serratus male)
ATGGCCGAACCACTATTTACAAACTTCGGAAGGTGGTGCGGACCATGCAA
GATGATGTCGGAGACTCTGGAGAAGGTGGGACCCAAAATGAAGGACGAAA
TACGGATATTCAAGATGGCCGAACCACTATTTACAAACTTCGGAAGGTGG
TGCGGACCATGCAAGATGATGTCGGAGACTCTGGAGAAGGTGGGACCCAA
AATGAAGGACGAAATACGGATATTCAAGATTGATTCAGACAAGTACCCCT
CTCTAATGACCAAGTTTGGCGTCAACGGGCTACCGACGCTCATCCTTTTC
AAGGAAGGAAAAGAGTTGAATCGGATAGAAGGCGTTCTGCCGCCCGAGCC
ACTCATGCAGCAAGTGCGTTACTGGCTGATTGATTCAGACAAGTACCCCT
CTCTAATGACCAAGTTTGGCGTCAACGGGCTACCGACGCTCATCCTTTTC
AAGGAAGGAAAAGAGTTGAATCGGATAGAAGGCGTTCTGCCGCCCGAGCC
ACTCATGCAGCAAGTGCGTTACTGGCTG
back to top