mRNA_F-serratus_M_contig1447.3168.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1447.3168.1 vs. uniprot
Match: A0A6H5LGE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE7_9PHAE) HSP 1 Score: 602 bits (1553), Expect = 1.160e-183 Identity = 509/1372 (37.10%), Postives = 671/1372 (48.91%), Query Frame = 1
Query: 1138 DGSAAEQLPPLLRSFDDDWQAFNEREEASSDPWDPPQAVPLVATGSSPPLALPVTANPAVVDGSGRCEVMLARRVAVGETVKELQLLPASPSPSPINRDGALSHSDAEHSSDRPFRLVLITTRGATVCLVCAARPPTSHYAAPTSTSTATATAVQPLSPLLPLERPRSGSWCSVVSASPPSSPSELPPTPTSASLSGKAARSPFKGGDRRGRSGVSYGKGDVTGQEEELEEIHQAVFLRRCFRFNHDVVRAAVHGCFLFVLTVEGIQVWTFPPDRPSMILGREAPGVE-------GIGKTMPG--TPRPCLLHMQRLEVDGVLPRSPPRCLLVVGGVRQTVLLFPP--AQDQVTIINSVYESNRRRENTTAGTRPQEP------QPPS-TAPLTLDARLLGEKTKEDAGDQDGNQHNSQAETMKAKLKAWQKGFCAGRSGRTGGPYGGSGDAFPVGLALALRVGTPTEAFRRLADGEVRARRPLSVSTLLAFVSAAEGLHTCLLEEAAESWRVAFSQKSFGGD--GGGDRDPTGGARIIETVLGGLTRCWRLNREGSRCAALVGRLMLEEAEGAAAAVGSQKAINSPCKAASVVAGQAYARACAWMLASRESVASSFERLQKAAESVTTALKAAGNTPEVQQAEHVAPATVSNSTDDRSTASLEGCFALE-NIQAGLFRALYDDYLLPALGMASVAGSSVSSIHV--SLPPLTERRQRRLEDRHQGASFEGVVEKMVEYLHARDMQWYTQPTELRQIGRGEARCSTSLAAAVVCAGRVPWAACPLGLRHALAALEEQERALEETVGAIRNSRSRSKTGGSGSDSINLLSSGFLT-LEGVACGSDPVGGAFLTRSGNHAPAE--EGRRPA------APAIQWIATARMVLTAYSEEMNLEEMGGRARGSNN-QVGLTVVDRIVELACERHPSLVIYSKSGAGGSLAKALLGMGRTRPLVSALVRLTSRNAGGDCGTVGEAPTGPHMAQELLQLKEHCFAPPVDPLQALLVFGIPGRQIAARLDSLRRSSLDAS---LNTV-IPPGSFESQNSDTFPQSGGGGVDRSPDGDTQYSLLQAASRDFLSRRCAASLARGGDLVAWEEERLSNAWGAPEAWQAAVASNRALDRAILRYLIGAHLDDLRALEHPAISGV----------SGRGAEMAPMSDDSSGNGRYEQPGTAVYGGRGSWAEAIFPLLTAQVSKGRGGAAEAHLDAITSLVREVTWQGVYPEGIGRGAGGNWRGIRPSEASEVVIEAKRRLPVSATARGLTTLSTVETMMGREDADVDAGDDDDRRSIVPWGCGGAGTEISRSPWPWGPRAVPPSAVGALVALAAALPAAGNLLGGLEVMLQVADEVVKAAKAEAA 5112
D S+A Q PPLLRSFDDDW+A R E +P +P + PL S + PV++N V+D G C+V+LARRV GE VKEL L P H S STA + AV G+S G V ++L VFLR+ +RFN+D++ A++ FLFVLTVEG++VWT+P + + G+E E G+ + P PRPCLLH+Q+LEVDGVLPRSP + ++ + G +LLFPP A T+ ++ RR + A P +PPS T PL+ G +N + KL AW+ GFC G G Y P LAL LR+ +PT A R L+ E + RP F+SAAEGLH L E + +WR G G IET+L GL CWRL R +RCA+L+G+L+LE A AA Q + C G AY RAC+W+LAS E V SF LQ A V+ A G+ E+ V P+ VS D+ + L +++ L RA+Y+ YLLP+ G+ G + + S P++E + Q S + V+ +V YLH D+Q + L + G R T L+ AVV A R PW CP+ L AL AL+EQ++ L E+ +S RS +G SG+ S G L L+ G+ +G+ PA + R P +P +WIA AR +L+ Y E+M GG+ + L +I++LACERHP+LV + GAG LA+ LL GR +P+V+ALV LTS GG GE GP A ELLQLK+ CF+P +DPLQAL VFG PGRQIA RLDS RR+SLD S +T+ PG F D + Q+ VD P+ ++ L AA+RDFLSRRC+ASLA L +ER+S A GAPEAW+A++A RALDRA+LRYLI AHLDDLR+LE+ A +GR + D+ N ++ + +WA+AI PLL+ QVSK RG AE H+DAI LVRE+T +G + GN + A EVV EAKRRLP + + T S D D + +DD + PWG GG GT R+PWPWGPRAVP SAVGA++ALAAALP AG LL GL+VMLQV +EVV AAKAE+A
Sbjct: 73 DDSSA-QPPPLLRSFDDDWEAIRTRREYVPEPLEP-EGAPLATEPYS--TSWPVSSNSTVLDRMGACDVVLARRVGPGEVVKELHLFPI-------------------HESS----------------------------------STADSHAVD---------------------------------------------------------GGISAGV--VAEYAQQL-----VVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENLPVTDGQERKWSEDGRFGDMGVPLSSPAHPPPRPCLLHVQKLEVDGVLPRSPVQIMVPLAGATPGLLLFPPPLAAKGDTLAFLTHQCQRRLRSPGAADEPIANGISAFCKPPSPTTPLSA---------------WPGGNNNLGQDCWSRKLAAWRNGFC-GLGGNKATEY------TPSPLALFLRLRSPTAAVRLLSVAEECSERPHPAKVSDMFLSAAEGLHNALTFEVSAAWRAGVGLAGTASTLAGHGSSSSVAEQVRIETILPGLVNCWRLQRVAARCASLLGQLLLETALSAA----EQGSAEGDC-----ATGLAYTRACSWLLASGEPVVESFASLQDVAARVSVA----GDETELTA---VVPSFVSLDDDEEGNSYLTTAEVPPLDLEELLPRAMYELYLLPSFGVRDTPGVGPPRLALDSSAIPISESGEP------QSLSLDDVLSGLVSYLHREDIQRLSLRPGLPSVWDGTPRY-TPLSTAVVYASRAPWTECPVALSQALLALDEQDKTLNEST----SSNIRSNSGSSGASLSRKTSRGGLKRLKSKTRPRHERSGS----TGHQKPASSLDDRDPTDDETTLSPTQEWIAVARAILSGYLEQMG--GTGGQPEAPRQGRSALAADSQILQLACERHPTLVAPLRGGAG-PLARDLLAAGRVKPVVAALVTLTSCGDGGGRAGCGEGSFGPQKAPELLQLKDDCFSPKIDPLQALYVFGAPGRQIAERLDSFRRASLDLSGPFCSTIGARPGLFHD---DAYEQNSEA-VDSRPN-PSETKSLSAAARDFLSRRCSASLATAA-LSVRHQERISQALGAPEAWRASLARTRALDRAVLRYLISAHLDDLRSLENSAAGNPKTPDGKPTADTGRSSGSVKTGSDTRTNNHRDREYS-------TWADAIVPLLSGQVSKARG--AEEHVDAILRLVREITRRGRSANN--SLSDGNRCSMNHEVAEEVVTEAKRRLPATELSPASTGASV--------DYDGNGHINDDTQ---PWGSGGEGTGKGRAPWPWGPRAVPASAVGAILALAAALPPAGKLLAGLDVMLQVGEEVVAAAKAESA 1239
BLAST of mRNA_F-serratus_M_contig1447.3168.1 vs. uniprot
Match: D7FV98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV98_ECTSI) HSP 1 Score: 251 bits (642), Expect = 9.680e-66 Identity = 210/588 (35.71%), Postives = 288/588 (48.98%), Query Frame = 1
Query: 898 KDFPPKRTSRAAASGKAKTSTRRRKDAGGISDLEREMSKKIGGXXXXXXXXXLVEGAITDAEDMVVCVVHPEEDGAVEAADGSAAEQLPPLLRSFDDDWQAFNEREEASSDPWDPPQAVPLVATGSSPPLALPVTANPAVVDGSGRCEVMLARRVAVGETVKELQLLPASPSPSPINRD--GALSHSDAE-HSSDRPFRLVLITTRGATVCLVCAARPPTSHYAAPTSTSTATATAVQPLSPLLPLERPRSGSWCSVVSASPPSSPSELPPTPTSASLSGKAARSPFKGGDRRGRSGVSYGKGDVTGQEEELEEIHQAVFLRRCFRFNHDVVRAAVHGCFLFVLTVEGIQVWTFPPDRPSMILGREAPGVE-------GIGKTMPG--TPRPCLLHMQRLEVDGVLPRSPPRCLLVVGGVRQTVLLFPPAQDQVTIINSVYESNRRRENTTAGTRPQEPQPPSTAPLTLDARLLGEKTKEDAGDQDGNQHNSQAETMKAKLKAWQKGFCAGRSGRTGGPYGGSGDAFPVGLALALRVGTPTEAFRRLADGEVRARRPLSVSTLLAFVSAAEGLHTCLLEEAAESWRVA 2625
KDFPPK +R SGK+K D GG S + K+ GG +VE AI++AED+VVCV+HP G + + ++ + PPLLRSFDDDW+A R E +P +P ++ PL S +LPV+ N V+D G C+V+LARRV GE VKEL LLP P + + G S A H D R VL+T++GATVCLV AA S +++ A+ S RPRS S+ ++PP + S S + + G+S G G E+ +++ VFLR+ +RFN+D++ A++ FLFVLTVEG++VWT+P + + G+ E G+ + P +PRPCLLH+Q+LEVDGVLPRSP RC++ +GG +LLFPP T+P P T PL+ G +N + K AW+ GFC G G Y P LAL LR+ +PTEA R L+ E R+ RP F+SAAEGLH L E + +WR A
Sbjct: 66 KDFPPKLAARGGPSGKSKGLAG--VDEGGRSPVFSGFRKE-GGKSKTEPRDGIVERAISEAEDLVVCVLHP--GGEQDDRETESSARPPPLLRSFDDDWEAIRTRREYVPEPLEP-ESAPLATEPFS--TSLPVSGNSTVLDRMGACDVVLARRVGPGEVVKELHLLPIHDRVDPWSSEDEGDPSRDKARSHPVDPCCRFVLLTSKGATVCLVRAALT--------ASEASSMFPALGRSSGRASPSRPRSSSFAXXXXXXXXXXDRKIPPVGSRCSSSTTDSHAVD--------GGISAG-----GVAEDSQQL--VVFLRQSYRFNNDMLVASITSAFLFVLTVEGVEVWTYPSENLPVTDGQGRKWSEDGRFGDMGVPLSSPAHASPRPCLLHVQKLEVDGVLPRSPARCMVPLGGETPGLLLFPPP---------------------LATKPPSP----TTPLSA---------------WPGGDNNVGQDFWPRKFAAWRDGFC-GLGGSKATEY------TPSPLALFLRLRSPTEAVRLLSVAEERSERPHPAKASAMFLSAAEGLHNALTFEVSAAWRAA 575 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1447.3168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1447.3168.1 >prot_F-serratus_M_contig1447.3168.1 ID=prot_F-serratus_M_contig1447.3168.1|Name=mRNA_F-serratus_M_contig1447.3168.1|organism=Fucus serratus male|type=polypeptide|length=1772bp MDDENVALALSDGRLCYADLSRSTEPLAAPLAKQENNRWPDWKCWRSRHGback to top mRNA from alignment at F-serratus_M_contig1447:96831..113726+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1447.3168.1 ID=mRNA_F-serratus_M_contig1447.3168.1|Name=mRNA_F-serratus_M_contig1447.3168.1|organism=Fucus serratus male|type=mRNA|length=16896bp|location=Sequence derived from alignment at F-serratus_M_contig1447:96831..113726+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1447:96831..113726+ >mRNA_F-serratus_M_contig1447.3168.1 ID=mRNA_F-serratus_M_contig1447.3168.1|Name=mRNA_F-serratus_M_contig1447.3168.1|organism=Fucus serratus male|type=CDS|length=10632bp|location=Sequence derived from alignment at F-serratus_M_contig1447:96831..113726+ (Fucus serratus male)back to top |