mRNA_F-serratus_M_contig1445.3163.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1445.3163.1
Unique NamemRNA_F-serratus_M_contig1445.3163.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-13
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 3 
Query:  270 CAFRLIRDDVVVMIVCLF-------------DEFQTT-REGL--------SWYLGCAFERDKE-AFFAHRIRAYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            C FR I D  VV I+ ++             +E  T+ R+ L        +WY GCA ERD E        +AYI  +   +G+   ++ PA  +ADLGP+R+DEP  DKPVR  +G L+W +  TRPD
Sbjct: 1468 CVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPD 1596
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BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.240e-13
Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 3 
Query:  270 CAFRLIRDDVVVMIVCLF-------------DEFQTT-REGL--------SWYLGCAFERDKE-AFFAHRIRAYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            C FR I D  VV I+ ++             +E  T+ R+ L        +WY GCA ERD E        +AYI  +   +G+   ++ PA  +A+LGP+R+DEP  DKPVR  +G L+W +  TRPD
Sbjct:  915 CVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPD 1043
[Close]
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.790e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 3 
Query:  354 SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            +WY GCA   D E       + AYIES+   + V  ++ +PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  162 TWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 239
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BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.920e-12
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 3 
Query:  270 CAFRLIRD-DVVVMIVCLFDEFQTTREG---------------------LSWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            C FR + D +VV +IV   D+     +G                      +WY GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  414 CVFRKVVDGEVVGLIVIYVDDILVAADGGERGELLASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 541
[Close]
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5K2N9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.470e-12
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:  348 GLSWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            G +WY GCA   D E       + AYIES+   + V   +  PA+ +ADLGP+R+DEP  DKPV+  +G L+W   +TRPD
Sbjct:  334 GCTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATNADLGPKRDDEPAVDKPVKEAIGCLMWTK-LTRPD 413
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BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5L6D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.750e-12
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 3 
Query:  354 SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            +WY GCA   D E       + AYIES+   + V   +  PA+  A++GPRR+DEP  DKPVR  +G L+W   +TRPD
Sbjct:   91 TWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAADAEIGPRRDDEPAVDKPVREAIGCLMWAK-LTRPD 168
[Close]
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.200e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 3 
Query:  354 SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            +WY GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:   93 TWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 170
[Close]
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JHJ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.320e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 3 
Query:  354 SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            +WY GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  140 TWYEGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPD 217
[Close]
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.360e-11
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 3 
Query:  354 SWYLGCAFERDKE---AFFAHRIRAYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            +WY GCA   D E   A  +H   AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G L+W   +TRPD
Sbjct:  245 TWYDGCATAMDVENGIAKLSHT--AYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAADKPVREAIGCLMWTK-LTRPD 322
[Close]
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-11
Identity = 49/129 (37.98%), Postives = 64/129 (49.61%), Query Frame = 3 
Query:  270 CAFRLIRD-DVVVMIVCLFDEF-----QTTREGL----------------SWYLGCAFERDKEAFFAHRIR-AYIESVASHYGVDAVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD 587
            C FR + D +VV +IV   DE      +  RE L                +W+ GCA   D E       + AYIES+   + V   +  PA+  ADLGP+R+DEP  DKPVR  +G LIW   +TRPD
Sbjct:  462 CVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLIWTK-LTRPD 589
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1445.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L175_9PHAE1.290e-1337.21Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE4.240e-1336.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU1_9PHAE4.790e-1245.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFZ2_9PHAE7.920e-1235.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2N9_9PHAE9.470e-1244.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D0_9PHAE9.750e-1244.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE1.200e-1145.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHJ1_9PHAE1.320e-1145.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXE8_9PHAE1.360e-1146.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.470e-1137.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1445contigF-serratus_M_contig1445:207472..208058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.3335898-UTR-F-serratus_M_contig1445:207471..2077761622929429.3335898-UTR-F-serratus_M_contig1445:207471..207776Fucus serratus maleUTRF-serratus_M_contig1445 207472..207776 +
1690962847.7558482-UTR-F-serratus_M_contig1445:207471..2077761690962847.7558482-UTR-F-serratus_M_contig1445:207471..207776Fucus serratus maleUTRF-serratus_M_contig1445 207472..207776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.3481557-CDS-F-serratus_M_contig1445:207776..2080581622929429.3481557-CDS-F-serratus_M_contig1445:207776..208058Fucus serratus maleCDSF-serratus_M_contig1445 207777..208058 +
1690962847.7650394-CDS-F-serratus_M_contig1445:207776..2080581690962847.7650394-CDS-F-serratus_M_contig1445:207776..208058Fucus serratus maleCDSF-serratus_M_contig1445 207777..208058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1445.3163.1prot_F-serratus_M_contig1445.3163.1Fucus serratus malepolypeptideF-serratus_M_contig1445 207777..208058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1445.3163.1

>prot_F-serratus_M_contig1445.3163.1 ID=prot_F-serratus_M_contig1445.3163.1|Name=mRNA_F-serratus_M_contig1445.3163.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MIVCLFDEFQTTREGLSWYLGCAFERDKEAFFAHRIRAYIESVASHYGVD
AVSNLPASQSADLGPRRNDEPVCDKPVRATVGSLIWLSGMTRPD
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mRNA from alignment at F-serratus_M_contig1445:207472..208058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1445.3163.1 ID=mRNA_F-serratus_M_contig1445.3163.1|Name=mRNA_F-serratus_M_contig1445.3163.1|organism=Fucus serratus male|type=mRNA|length=587bp|location=Sequence derived from alignment at F-serratus_M_contig1445:207472..208058+ (Fucus serratus male)
GGGAAATCGTCGATTACGTCTGACACTGCTTTTCTTGTTTCTAGAACGAA
GCGGGGAAACAGCATGTTGGAAGATCCCAATTCCTGCCCTCACGTTGTGA
AGGACGCCGATTTTGCCATTTCTGATAGGGAGAATTCGTAGATGTGGCAC
CTGATGTTTAGCTGCGTCCAGTGTTAAACTTGGTAGCTATTGCTGCCAAA
ATATGACTGGAAATTACTACAGCTAGATGTAAAACAAGCATTCATTCAGG
CTGATTTGGACTTCAATGTTGTGCTTTCCGGCTGATTAGGGATGATGTAG
TAGTTATGATTGTTTGTCTTTTTGACGAGTTCCAGACTACGAGAGAAGGA
CTCTCGTGGTACCTAGGGTGCGCGTTTGAGCGTGATAAGGAGGCGTTCTT
CGCGCATCGCATAAGAGCGTATATCGAGTCTGTTGCCAGCCACTATGGAG
TTGACGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCT
AGGAGGAACGACGAGCCGGTCTGTGATAAACCTGTTCGGGCGACTGTTGG
TAGTTTGATTTGGTTGAGTGGTATGACGCGGCCAGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1445:207472..208058+

>mRNA_F-serratus_M_contig1445.3163.1 ID=mRNA_F-serratus_M_contig1445.3163.1|Name=mRNA_F-serratus_M_contig1445.3163.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig1445:207472..208058+ (Fucus serratus male)
ATGATTGTTTGTCTTTTTGACGAGTTCCAGACTACGAGAGAAGGACTCTC
GTGGTACCTAGGGTGCGCGTTTGAGCGTGATAAGGAGGCGTTCTTCGCGC
ATCGCATAAGAGCGTATATCGAGTCTGTTGCCAGCCACTATGGAGTTGAC
GCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAGGAG
GAACGACGAGCCGGTCTGTGATAAACCTGTTCGGGCGACTGTTGGTAGTT
TGATTTGGTTGAGTGGTATGACGCGGCCAGACATGATTGTTTGTCTTTTT
GACGAGTTCCAGACTACGAGAGAAGGACTCTCGTGGTACCTAGGGTGCGC
GTTTGAGCGTGATAAGGAGGCGTTCTTCGCGCATCGCATAAGAGCGTATA
TCGAGTCTGTTGCCAGCCACTATGGAGTTGACGCAGTGTCTAATCTCCCG
GCTTCTCAATCGGCAGATCTCGGCCCTAGGAGGAACGACGAGCCGGTCTG
TGATAAACCTGTTCGGGCGACTGTTGGTAGTTTGATTTGGTTGAGTGGTA
TGACGCGGCCAGAC
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