mRNA_F-serratus_M_contig1444.3159.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1444.3159.1
Unique NamemRNA_F-serratus_M_contig1444.3159.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1444.3159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1444contigF-serratus_M_contig1444:140293..140830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.8122897-UTR-F-serratus_M_contig1444:140292..1403621622929427.8122897-UTR-F-serratus_M_contig1444:140292..140362Fucus serratus maleUTRF-serratus_M_contig1444 140293..140362 +
1690962847.0247118-UTR-F-serratus_M_contig1444:140292..1403621690962847.0247118-UTR-F-serratus_M_contig1444:140292..140362Fucus serratus maleUTRF-serratus_M_contig1444 140293..140362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.8678606-CDS-F-serratus_M_contig1444:140362..1408301622929427.8678606-CDS-F-serratus_M_contig1444:140362..140830Fucus serratus maleCDSF-serratus_M_contig1444 140363..140830 +
1690962847.035483-CDS-F-serratus_M_contig1444:140362..1408301690962847.035483-CDS-F-serratus_M_contig1444:140362..140830Fucus serratus maleCDSF-serratus_M_contig1444 140363..140830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1444.3159.1prot_F-serratus_M_contig1444.3159.1Fucus serratus malepolypeptideF-serratus_M_contig1444 140363..140830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1444.3159.1

>prot_F-serratus_M_contig1444.3159.1 ID=prot_F-serratus_M_contig1444.3159.1|Name=mRNA_F-serratus_M_contig1444.3159.1|organism=Fucus serratus male|type=polypeptide|length=156bp
MFHMLSGGIYRKQICLQAQQRSEYAGAHRAGAQQIKKLATQSPLHNQFSG
AQHRKVMAFTSRVIHENVASLWALEPTLTCNPQNNFGYLGATDSRLDTAT
IMNKNNATCCTLYYIVLIPVGRGRVRSHAKSVRSDFLLDAEERDDIHPLK
HLVHC*
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mRNA from alignment at F-serratus_M_contig1444:140293..140830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1444.3159.1 ID=mRNA_F-serratus_M_contig1444.3159.1|Name=mRNA_F-serratus_M_contig1444.3159.1|organism=Fucus serratus male|type=mRNA|length=538bp|location=Sequence derived from alignment at F-serratus_M_contig1444:140293..140830+ (Fucus serratus male)
GTTGCATCCAAGGAAAGGAGAGTTTGGGGTTTTGGCGGGCGGCAACTTGT
CGGGGTTTGGGGTTTAATACATGTTTCATATGCTATCAGGAGGTATTTAT
CGAAAGCAAATATGCTTGCAGGCCCAGCAACGTTCCGAGTATGCGGGCGC
ACACCGCGCCGGAGCTCAACAGATCAAGAAGCTGGCGACGCAGTCTCCCT
TGCACAACCAGTTTTCAGGAGCGCAACATCGGAAAGTCATGGCCTTCACC
TCGCGTGTCATCCACGAGAACGTCGCGAGTCTTTGGGCACTGGAACCGAC
CCTGACGTGTAACCCTCAAAATAATTTCGGGTACCTGGGAGCAACTGACT
CGCGGTTGGATACTGCTACGATTATGAATAAAAACAATGCTACATGCTGT
ACCTTGTATTATATAGTCCTCATTCCTGTCGGGAGAGGACGAGTCCGGTC
CCACGCAAAAAGCGTAAGATCGGACTTTCTTCTCGATGCCGAGGAGAGAG
ATGATATCCATCCTCTTAAGCATCTGGTACATTGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1444:140293..140830+

>mRNA_F-serratus_M_contig1444.3159.1 ID=mRNA_F-serratus_M_contig1444.3159.1|Name=mRNA_F-serratus_M_contig1444.3159.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig1444:140293..140830+ (Fucus serratus male)
ATGTTTCATATGCTATCAGGAGGTATTTATCGAAAGCAAATATGCTTGCA
GGCCCAGCAACGTTCCGAGTATGCGGGCGCACACCGCGCCGGAGCTCAAC
AGATCAAGAAGCTGGCGACGCAGTCTCCCTTGCACAACCAGTTTTCAGGA
GCGCAACATCGGAAAGTCATGGCCTTCACCTCGCGTGTCATCCACGAGAA
CGTCGCGAGTCTTTGGGCACTGGAACCGACCCTGACGTGTAACCCTCAAA
ATAATTTCGGGTACCTGGGAGCAACTGACTCGCGGTTGGATACTGCTACG
ATTATGAATAAAAACAATGCTACATGCTGTACCTTGTATTATATAGTCCT
CATTCCTGTCGGGAGAGGACGAGTCCGGTCCCACGCAAAAAGCGTAAGAT
CGGACTTTCTTCTCGATGCCGAGGAGAGAGATGATATCCATCCTCTTAAG
CATCTGGTACATTGCTGAATGTTTCATATGCTATCAGGAGGTATTTATCG
AAAGCAAATATGCTTGCAGGCCCAGCAACGTTCCGAGTATGCGGGCGCAC
ACCGCGCCGGAGCTCAACAGATCAAGAAGCTGGCGACGCAGTCTCCCTTG
CACAACCAGTTTTCAGGAGCGCAACATCGGAAAGTCATGGCCTTCACCTC
GCGTGTCATCCACGAGAACGTCGCGAGTCTTTGGGCACTGGAACCGACCC
TGACGTGTAACCCTCAAAATAATTTCGGGTACCTGGGAGCAACTGACTCG
CGGTTGGATACTGCTACGATTATGAATAAAAACAATGCTACATGCTGTAC
CTTGTATTATATAGTCCTCATTCCTGTCGGGAGAGGACGAGTCCGGTCCC
ACGCAAAAAGCGTAAGATCGGACTTTCTTCTCGATGCCGAGGAGAGAGAT
GATATCCATCCTCTTAAGCATCTGGTACATTGCTGA
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