mRNA_F-serratus_M_contig1444.3158.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645) HSP 1 Score: 72.4 bits (176), Expect = 7.060e-12 Identity = 47/151 (31.13%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKY-GAADERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF GNC+NCGK GH+A DCR+ KK EK G A+ ++ AML++ + P+ EW DSGAT H+ + + Y A P + + + V+G+G++ + + ++ K++ +++V +VP + +NLVS
Sbjct: 258 KFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPK-----------------EWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKM----TSGKVLTLNNVMHVPSIRKNLVS 387
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A5S6QG42_TRIMR (Uncharacterized protein n=5 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QG42_TRIMR) HSP 1 Score: 70.9 bits (172), Expect = 2.880e-11 Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query: 22 YNKFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPG-TNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
+ K D C+ C KKGH A +C+S K ++K S G G + +M+ A ++ A GA + G WV DSGAT HMS + +K SP T ++IADG++LP+ G + L + T K + +VPG+ ++S
Sbjct: 222 FGKADAICYKCSKKGHYARECKS------KVDHKRKQKNSPGDGKL--QMSHA------SLYASCGAVSNGFAGAWVIDSGATHHMSPNEEYFTKWKAKSPANTQVQIADGSVLPIANAGTVRAKLTRNKGTVKEFSAKNTLFVPGIRTGILS 360
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A0J7K7P3_LASNI (Integrase core domain protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7P3_LASNI) HSP 1 Score: 69.7 bits (169), Expect = 7.100e-11 Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 1
Query: 34 DGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
DG+CF CGKKGH A DCR K+ E+ + S A + + +P V ++ R D + W++DSGA+ H++ R +SDY+ S G +++ D V G G + ++ G T + + +V +VP L +NL+S
Sbjct: 168 DGDCFYCGKKGHYARDCRKKKRDNEERKSRTSSHGSSENCAFILTSKSSSMPSTEDVQQLL---RVDTEDVWLTDSGASCHVTFHREWLSDYRSVS-GEKVKLGDDAECDVRGIGNVHIEKLVRG-TWENATIRNVFFVPKLKKNLLS 310
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A2G3BPT2_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BPT2_CAPCH) HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9 Identity = 49/152 (32.24%), Postives = 77/152 (50.66%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAA--DERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK GH+++DCR+ KK +KY A + KE AM ++ +VG R EW DSG T H+ + S + A I +A+ V+G G++ + + ++ K++ +++V Y+P L RNL+S
Sbjct: 401 KFKGKCFNCGKIGHKSMDCRAPKKGKKKYQANMFESNKEYDDLCAMFSEYN------------LVGDPR-----EWWMDSGVTRHVCANKELFSSFAPAQVEEMIYMANSVTAKVEGTGKVCLKM----TSGKVLTLNNVLYIPELRRNLIS 531
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438E1I7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E1I7_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 1.800e-8 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK+GH++VDCR KK ++ KE+ ++ +T V ++ AV + V S+ K EW D+GAT H+ + S ++ G + + + + G G++ + + ++ K + + +V YVP + +NLVS
Sbjct: 247 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 380
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A5AT67_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AT67_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 1.810e-8 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK+GH++VDCR KK ++ KE+ ++ +T V ++ AV + V S+ K EW D+GAT H+ + S ++ G + + + + G G++ + + ++ K + + +V YVP + +NLVS
Sbjct: 196 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 329
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438F828_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F828_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 1.810e-8 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK+GH++VDCR KK ++ KE+ ++ +T V ++ AV + V S+ K EW D+GAT H+ + S ++ G + + + + G G++ + + ++ K + + +V YVP + +NLVS
Sbjct: 172 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 305
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438FY08_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FY08_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 1.820e-8 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK+GH++VDCR KK ++ KE+ ++ +T V ++ V + V S+ K EW D+GATLH+ + S ++ G + + + + G G++ + + ++ K + + +V YVP + +NLVS
Sbjct: 182 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTTVVSEVNLVGSNPK-EWWIDTGATLHVCSDKKMFSTFEPIENGEKMFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 315
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438CI20_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CI20_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 1.840e-8 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK+GH++VDCR KK ++ KE+ ++ +T V ++ AV + V S+ K EW D+GAT H+ + S ++ G + + + + G G++ + + ++ K + + +V YVP + +NLVS
Sbjct: 275 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 408
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438E115_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E115_VITVI) HSP 1 Score: 62.4 bits (150), Expect = 2.360e-8 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
KF G CFNCGK+GH++VDCR KK ++ KE+ ++ +T V ++ AV + V S+ K EW D+GAT H+ + S ++ G + + + + G G++ + + ++ K + + +V YVP + +NLVS
Sbjct: 275 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVSDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 408 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1444.3158.1 >prot_F-serratus_M_contig1444.3158.1 ID=prot_F-serratus_M_contig1444.3158.1|Name=mRNA_F-serratus_M_contig1444.3158.1|organism=Fucus serratus male|type=polypeptide|length=160bp KGKNRRLYNKFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGback to top mRNA from alignment at F-serratus_M_contig1444:135890..136480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1444.3158.1 ID=mRNA_F-serratus_M_contig1444.3158.1|Name=mRNA_F-serratus_M_contig1444.3158.1|organism=Fucus serratus male|type=mRNA|length=591bp|location=Sequence derived from alignment at F-serratus_M_contig1444:135890..136480- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1444:135890..136480- >mRNA_F-serratus_M_contig1444.3158.1 ID=mRNA_F-serratus_M_contig1444.3158.1|Name=mRNA_F-serratus_M_contig1444.3158.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig1444:135890..136480- (Fucus serratus male)back to top |