mRNA_F-serratus_M_contig1444.3158.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1444.3158.1
Unique NamemRNA_F-serratus_M_contig1444.3158.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645)

HSP 1 Score: 72.4 bits (176), Expect = 7.060e-12
Identity = 47/151 (31.13%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKY-GAADERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF GNC+NCGK GH+A DCR+ KK  EK  G A+  ++     AML++  +   P+                 EW  DSGAT H+   +   + Y  A P   + + +     V+G+G++ + +    ++ K++ +++V +VP + +NLVS
Sbjct:  258 KFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPK-----------------EWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKM----TSGKVLTLNNVMHVPSIRKNLVS 387          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A5S6QG42_TRIMR (Uncharacterized protein n=5 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QG42_TRIMR)

HSP 1 Score: 70.9 bits (172), Expect = 2.880e-11
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   22 YNKFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPG-TNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            + K D  C+ C KKGH A +C+S      K     ++K S G G +  +M+ A      ++ A  GA  +   G WV DSGAT HMS      + +K  SP  T ++IADG++LP+   G +   L +   T K     +  +VPG+   ++S
Sbjct:  222 FGKADAICYKCSKKGHYARECKS------KVDHKRKQKNSPGDGKL--QMSHA------SLYASCGAVSNGFAGAWVIDSGATHHMSPNEEYFTKWKAKSPANTQVQIADGSVLPIANAGTVRAKLTRNKGTVKEFSAKNTLFVPGIRTGILS 360          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A0J7K7P3_LASNI (Integrase core domain protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7P3_LASNI)

HSP 1 Score: 69.7 bits (169), Expect = 7.100e-11
Identity = 47/148 (31.76%), Postives = 76/148 (51.35%), Query Frame = 1
Query:   34 DGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            DG+CF CGKKGH A DCR  K+  E+  +      S    A +     + +P    V  ++   R D +  W++DSGA+ H++  R  +SDY+  S G  +++ D     V G G + ++    G T +   + +V +VP L +NL+S
Sbjct:  168 DGDCFYCGKKGHYARDCRKKKRDNEERKSRTSSHGSSENCAFILTSKSSSMPSTEDVQQLL---RVDTEDVWLTDSGASCHVTFHREWLSDYRSVS-GEKVKLGDDAECDVRGIGNVHIEKLVRG-TWENATIRNVFFVPKLKKNLLS 310          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A2G3BPT2_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BPT2_CAPCH)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9
Identity = 49/152 (32.24%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAA--DERKESGGGGAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK GH+++DCR+ KK  +KY A   +  KE     AM ++              +VG  R     EW  DSG T H+   +   S +  A     I +A+     V+G G++ + +    ++ K++ +++V Y+P L RNL+S
Sbjct:  401 KFKGKCFNCGKIGHKSMDCRAPKKGKKKYQANMFESNKEYDDLCAMFSEYN------------LVGDPR-----EWWMDSGVTRHVCANKELFSSFAPAQVEEMIYMANSVTAKVEGTGKVCLKM----TSGKVLTLNNVLYIPELRRNLIS 531          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438E1I7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E1I7_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.800e-8
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK+GH++VDCR  KK        ++ KE+     ++  +T  V   ++ AV + V    S+ K EW  D+GAT H+   +   S ++    G  + + +     + G G++ + +    ++ K + + +V YVP + +NLVS
Sbjct:  247 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 380          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A5AT67_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AT67_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.810e-8
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK+GH++VDCR  KK        ++ KE+     ++  +T  V   ++ AV + V    S+ K EW  D+GAT H+   +   S ++    G  + + +     + G G++ + +    ++ K + + +V YVP + +NLVS
Sbjct:  196 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 329          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438F828_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F828_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.810e-8
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK+GH++VDCR  KK        ++ KE+     ++  +T  V   ++ AV + V    S+ K EW  D+GAT H+   +   S ++    G  + + +     + G G++ + +    ++ K + + +V YVP + +NLVS
Sbjct:  172 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 305          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438FY08_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FY08_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.820e-8
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK+GH++VDCR  KK        ++ KE+     ++  +T  V   ++  V + V    S+ K EW  D+GATLH+   +   S ++    G  + + +     + G G++ + +    ++ K + + +V YVP + +NLVS
Sbjct:  182 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTTVVSEVNLVGSNPK-EWWIDTGATLHVCSDKKMFSTFEPIENGEKMFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 315          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438CI20_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CI20_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.840e-8
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK+GH++VDCR  KK        ++ KE+     ++  +T  V   ++ AV + V    S+ K EW  D+GAT H+   +   S ++    G  + + +     + G G++ + +    ++ K + + +V YVP + +NLVS
Sbjct:  275 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVYDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 408          
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Match: A0A438E115_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E115_VITVI)

HSP 1 Score: 62.4 bits (150), Expect = 2.360e-8
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 KFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGGGAMLAKMTVAVVP-EVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGISDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYVPGLSRNLVS 477
            KF G CFNCGK+GH++VDCR  KK        ++ KE+     ++  +T  V   ++ AV + V    S+ K EW  D+GAT H+   +   S ++    G  + + +     + G G++ + +    ++ K + + +V YVP + +NLVS
Sbjct:  275 KFQGKCFNCGKQGHKSVDCRLPKK--------NKPKEAN----VIDDITKNVSDIDLTAVVSEVNLVGSNPK-EWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKM----TSGKELTLTNVLYVPEIRKNLVS 408          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1444.3158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F43F6457.060e-1231.13hypothetical protein n=1 Tax=Corynebacterium parak... [more]
A0A5S6QG42_TRIMR2.880e-1132.68Uncharacterized protein n=5 Tax=Trichuris muris Ta... [more]
A0A0J7K7P3_LASNI7.100e-1131.76Integrase core domain protein (Fragment) n=1 Tax=L... [more]
A0A2G3BPT2_CAPCH1.120e-932.24Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
A0A438E1I7_VITVI1.800e-830.46Retrovirus-related Pol polyprotein from transposon... [more]
A5AT67_VITVI1.810e-830.46Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438F828_VITVI1.810e-830.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FY08_VITVI1.820e-830.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CI20_VITVI1.840e-830.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E115_VITVI2.360e-830.46Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1444contigF-serratus_M_contig1444:135890..136480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue2.8e-10
Seed eggNOG ortholog3750.XP_008347143.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4219)
EggNOG OGs37UZ7@33090,3GIGD@35493,4JV2T@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.7063477-CDS-F-serratus_M_contig1444:135889..1362181622929428.7063477-CDS-F-serratus_M_contig1444:135889..136218Fucus serratus maleCDSF-serratus_M_contig1444 135890..136218 -
1690962847.4326208-CDS-F-serratus_M_contig1444:135889..1362181690962847.4326208-CDS-F-serratus_M_contig1444:135889..136218Fucus serratus maleCDSF-serratus_M_contig1444 135890..136218 -
1622929428.7257638-CDS-F-serratus_M_contig1444:136329..1364801622929428.7257638-CDS-F-serratus_M_contig1444:136329..136480Fucus serratus maleCDSF-serratus_M_contig1444 136330..136480 -
1690962847.4505415-CDS-F-serratus_M_contig1444:136329..1364801690962847.4505415-CDS-F-serratus_M_contig1444:136329..136480Fucus serratus maleCDSF-serratus_M_contig1444 136330..136480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1444.3158.1prot_F-serratus_M_contig1444.3158.1Fucus serratus malepolypeptideF-serratus_M_contig1444 135890..136480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1444.3158.1

>prot_F-serratus_M_contig1444.3158.1 ID=prot_F-serratus_M_contig1444.3158.1|Name=mRNA_F-serratus_M_contig1444.3158.1|organism=Fucus serratus male|type=polypeptide|length=160bp
KGKNRRLYNKFDGNCFNCGKKGHRAVDCRSTKKKGEKYGAADERKESGGG
GAMLAKMTVAVVPEVRAVAAMVGAARSDKKGEWVSDSGATLHMSHTRAGI
SDYKKASPGTNIEIADGNILPVDGFGRIEMDLDQPGSTTKMVRMDDVAYV
PGLSRNLVST
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mRNA from alignment at F-serratus_M_contig1444:135890..136480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1444.3158.1 ID=mRNA_F-serratus_M_contig1444.3158.1|Name=mRNA_F-serratus_M_contig1444.3158.1|organism=Fucus serratus male|type=mRNA|length=591bp|location=Sequence derived from alignment at F-serratus_M_contig1444:135890..136480- (Fucus serratus male)
AAGGGGAAGAACAGAAGACTCTACAACAAGTTCGATGGAAATTGCTTCAA TTGCGGGAAGAAAGGTCACCGCGCTGTAGACTGCAGGAGCACGAAGAAGA AGGGCGAAAAATACGGAGCTGCCGACGAGAGGAAGGAGAGCGGCGGCGGC GGTAGGTGCTACATCTGCGGAAGTGAGGAGCACCTTGCGCACAAGCACTG CGGGCTGTGCAAGAGCCTTGAGCACCGGATGCGAGACTGTGAGGAGCGCG GAGCTGAAAAAGGCGCAATGCTGGCAAAAATGACTGTGGCGGTGGTTCCT GAGGTGAGAGCAGTGGCGGCAATGGTGGGAGCCGCCCGTAGCGACAAGAA GGGAGAATGGGTATCAGATTCCGGTGCCACGCTTCATATGTCGCACACCC GCGCCGGAATATCTGATTATAAGAAGGCGTCACCAGGAACGAACATTGAG ATCGCCGACGGTAATATTCTACCGGTGGACGGCTTCGGGAGAATTGAGAT GGATCTGGACCAACCGGGGAGTACAACCAAGATGGTGAGGATGGACGATG TCGCGTACGTGCCGGGACTCTCTCGAAACCTGGTGTCTACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1444:135890..136480-

>mRNA_F-serratus_M_contig1444.3158.1 ID=mRNA_F-serratus_M_contig1444.3158.1|Name=mRNA_F-serratus_M_contig1444.3158.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig1444:135890..136480- (Fucus serratus male)
AAGGGGAAGAACAGAAGACTCTACAACAAGTTCGATGGAAATTGCTTCAA
TTGCGGGAAGAAAGGTCACCGCGCTGTAGACTGCAGGAGCACGAAGAAGA
AGGGCGAAAAATACGGAGCTGCCGACGAGAGGAAGGAGAGCGGCGGCGGC
GAAGGGGAAGAACAGAAGACTCTACAACAAGTTCGATGGAAATTGCTTCA
ATTGCGGGAAGAAAGGTCACCGCGCTGTAGACTGCAGGAGCACGAAGAAG
AAGGGCGAAAAATACGGAGCTGCCGACGAGAGGAAGGAGAGCGGCGGCGG
CGGCGCAATGCTGGCAAAAATGACTGTGGCGGTGGTTCCTGAGGTGAGAG
CAGTGGCGGCAATGGTGGGAGCCGCCCGTAGCGACAAGAAGGGAGAATGG
GTATCAGATTCCGGTGCCACGCTTCATATGTCGCACACCCGCGCCGGAAT
ATCTGATTATAAGAAGGCGTCACCAGGAACGAACATTGAGATCGCCGACG
GTAATATTCTACCGGTGGACGGCTTCGGGAGAATTGAGATGGATCTGGAC
CAACCGGGGAGTACAACCAAGATGGTGAGGATGGACGATGTCGCGTACGT
GCCGGGACTCTCTCGAAACCTGGTGTCTACTGCGCAATGCTGGCAAAAAT
GACTGTGGCGGTGGTTCCTGAGGTGAGAGCAGTGGCGGCAATGGTGGGAG
CCGCCCGTAGCGACAAGAAGGGAGAATGGGTATCAGATTCCGGTGCCACG
CTTCATATGTCGCACACCCGCGCCGGAATATCTGATTATAAGAAGGCGTC
ACCAGGAACGAACATTGAGATCGCCGACGGTAATATTCTACCGGTGGACG
GCTTCGGGAGAATTGAGATGGATCTGGACCAACCGGGGAGTACAACCAAG
ATGGTGAGGATGGACGATGTCGCGTACGTGCCGGGACTCTCTCGAAACCT
GGTGTCTACT
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