mRNA_F-serratus_M_contig1444.3157.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1444.3157.1
Unique Name	mRNA_F-serratus_M_contig1444.3157.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1444.3157.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1444.3157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1444	contig	F-serratus_M_contig1444:110762..116169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	623
Cds size	498
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1444.3157.1	prot_F-serratus_M_contig1444.3157.1	Fucus serratus male	polypeptide	F-serratus_M_contig1444 110762..116045 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929427.6623852-CDS-F-serratus_M_contig1444:110761..111003	1622929427.6623852-CDS-F-serratus_M_contig1444:110761..111003	Fucus serratus male	CDS	F-serratus_M_contig1444 110762..111003 -
1690962846.9771128-CDS-F-serratus_M_contig1444:110761..111003	1690962846.9771128-CDS-F-serratus_M_contig1444:110761..111003	Fucus serratus male	CDS	F-serratus_M_contig1444 110762..111003 -
1622929427.6771257-CDS-F-serratus_M_contig1444:111404..111539	1622929427.6771257-CDS-F-serratus_M_contig1444:111404..111539	Fucus serratus male	CDS	F-serratus_M_contig1444 111405..111539 -
1690962846.986809-CDS-F-serratus_M_contig1444:111404..111539	1690962846.986809-CDS-F-serratus_M_contig1444:111404..111539	Fucus serratus male	CDS	F-serratus_M_contig1444 111405..111539 -
1622929427.6915889-CDS-F-serratus_M_contig1444:115456..115524	1622929427.6915889-CDS-F-serratus_M_contig1444:115456..115524	Fucus serratus male	CDS	F-serratus_M_contig1444 115457..115524 -
1690962846.995549-CDS-F-serratus_M_contig1444:115456..115524	1690962846.995549-CDS-F-serratus_M_contig1444:115456..115524	Fucus serratus male	CDS	F-serratus_M_contig1444 115457..115524 -
1622929427.721374-CDS-F-serratus_M_contig1444:115992..116045	1622929427.721374-CDS-F-serratus_M_contig1444:115992..116045	Fucus serratus male	CDS	F-serratus_M_contig1444 115993..116045 -
1690962847.0044692-CDS-F-serratus_M_contig1444:115992..116045	1690962847.0044692-CDS-F-serratus_M_contig1444:115992..116045	Fucus serratus male	CDS	F-serratus_M_contig1444 115993..116045 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929427.7375727-UTR-F-serratus_M_contig1444:116045..116169	1622929427.7375727-UTR-F-serratus_M_contig1444:116045..116169	Fucus serratus male	UTR	F-serratus_M_contig1444 116046..116169 -
1690962847.0140483-UTR-F-serratus_M_contig1444:116045..116169	1690962847.0140483-UTR-F-serratus_M_contig1444:116045..116169	Fucus serratus male	UTR	F-serratus_M_contig1444 116046..116169 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1444:110762..116169-
coding sequence from alignment at F-serratus_M_contig1444:110762..116169-

protein sequence of mRNA_F-serratus_M_contig1444.3157.1

>prot_F-serratus_M_contig1444.3157.1 ID=prot_F-serratus_M_contig1444.3157.1|Name=mRNA_F-serratus_M_contig1444.3157.1|organism=Fucus serratus male|type=polypeptide|length=166bp
MPGLRPSFWRPERPWRLRPNNYKAGRTHPAIAKREECFSKAMYKMLKRMD
IISLLGIEKKVRSYASCVGPDYLSSPDRDGDSVIKAISRMYESLSSEDRG
AFERFLAFERFIAGARSRAEGRAATAGDGGAGQPLAEGHNPERAPAEDGG
AGQPPADDGGAGRPPA

mRNA from alignment at F-serratus_M_contig1444:110762..116169-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1444.3157.1 ID=mRNA_F-serratus_M_contig1444.3157.1|Name=mRNA_F-serratus_M_contig1444.3157.1|organism=Fucus serratus male|type=mRNA|length=5408bp|location=Sequence derived from alignment at F-serratus_M_contig1444:110762..116169- (Fucus serratus male)
CGTTTGGGTATCCGTCTTCTTCGCAGCACGATCCCTGGGCCTTACACCTC
ATCTTGTACTATTCTATTGGGGAGGCACAAGACTGGCACGCTTCTCGCCG
GACTCGCTCTGAGCAGAGCGAACAATGCCAGGTCTTAGGCCCTCCTTCTG
GAGGCCAGAACGGCCGTGGCGCCTTAGGTGATCTATAATTATCACTCGTA
ATAATACTCTGAGGGGTTCCAAGTACTGTACTTCCGACCAACTCTCGGAC
TGCAAACTTCTTGTCTTATACCGCCAACTGGCTTTTGATGCCTTGGAGGC
TTGTCCTCAGCGTTTGATTTTGTCATCTGGAACGAGAGCCGATACTGCAT
CATGTATTATGCGCTTCCTTGAACTTTTCCTTGTCCAAACATTACGCGTA
CGCTCATCCTACAGCAGTACTTGTTGTGTTGTACCCTGGTATCCCCTCAT
CACTTGTATCTGGTAGGTAGGTTATATACCTGGTAGGAATAGTGGGTACC
TGTAACACAATTTTCTGAAAGCTGAACTTGTACAACAACTACTATCTGTA
CGTACAGTAGGCTCTAGCACCGGTATTATATTATACGGTAGTAAGTTTCT
CACGTAGCTCAACTCCTCGGTACCTCTATACCTTGATCCCACCAGGCCAA
ACAACTACAAAGCGGGCCGTACACATCCTGCGATAGCCAAACGGGAGGAA
TGCTTCAGCAAGGGTGAGTGGTTGCCAATTCCGCTCAGCCTTCGTAGGAA
GTCGGAGAAGACGACATACAGTACTAAATTTATTATCATGTGTTGTTATT
CAAAGTCTACAATGCAAGTGTAGATAGTAATCTCATAGAGCAGAGTATAG
ATGAACCTTGGGCACACCCTTGTAGGATTTCTGATCAAGCTGAACAGGGA
AGATGAACATTTCTCTGTCCCCGTTCGCGCCTGGGAATTAAGTCTCGTGA
GACGAGTTCGGCAGTCCCGTCCCAAACTAGCCCGCCCATTCTCCAAACTC
AGGCTGAATCTGGTTCTTGCTTACGAGATTCCTCCCGATTTCCGCAGTAG
ACGCTCGTACCAGTACAGGTATTGGTTTATAATAGGGTACAAAAGGAACA
AGAACCACAGGTAGGTACAAACGGGTACGAGTATTTGTGGCGGGTCGACG
TCACATGGACATAACTCTCGTGTGTGAGCGGGTTGCCTTTAGTGGGCGGG
CTTCGTGGCAAATGTTTTCAAGGTACAAAAGTAGCAGGGCTATACTCATC
ATCGACGAACACAGCCCCCAGAGGAAGCGATGCCGTCTCTTTACTACAGT
ACCTACCGTACCATCGTATCTTGGACAAGTCATGACCCGTTAAACCACTG
CAATTCCGTCAAGACTCTGATTGAACCGAATCTTGACACGGAAAAACAAG
ATTTCATCTAAACAGAGTTAGAAGTCGATACGGCATACGGCCGTTTACAT
ACCATGAAGAGATTTTGTATTGTAGCCTATGATCCCAACTGAACGTTTTA
ACATCTTATCCCCCTGACTGGGAGATGCTCCGAAGGTTTAGATGCGTTCA
GCTTTTTCTTTAGACGTCGAGACGTCGAGACTTTCTCACCGCCGGGAGAA
AAAACAGGACCTGCTTTCAAACGAACAATATCCATCATGAAGTCTTTCCA
AAACAAAAGTTCAACGAGAATTAGTTTGTTCACTTCTTACCTTGAGGTCC
GAACTTTCTGCACCCCCCCCCCCGCCAACACATATACTCTACGGTATAAA
CAACACTCCGTACAGTAAAGTTATGCGCCACGTTGTAAGGGGCAAGCCCT
ACCTAGGTGACACCTAACACAGTGCCCGTAAACTGCAGTAATTTTGGCCC
AGTACAACAAGATAAAAACAACAGGTACGAGTATAATCAACAAGTACAGG
TGTACCTTTCTGCACAGATAGTACTACTAATAACAGTTCAGCAGCATCGT
TAAACACGAATGAATGGAAGCAATACAAAATACGCTCCACCTGTGTATCC
TCAACTCCCGCCTGTTATCGGGGCACCTGGGATTTGTTGCGGGGACGCTT
CGGGGATCTCTTTTCCCCGTTTGTCATAATTCGGTGGGTATGCGACTCAC
GTGACCCCGTGCTCTGTGTCAGGGGTGCTCTTACTTCACAATGTTTTCAG
AAAAATCTGAACACAACTGTCTTACCAGGTACAACTTACTGGTACAATGC
AGCAATCCTCTCGAGTTTTTTTATTCGCGTGTTTAAAGGGATGCTTTCGT
CTGAGTTAGTCGATCAGGAACAAAAAAATGCGAACGGTAACCAGCAAAAA
ACACGCCTCGAGGCGAGCAAACCTCCTACGTACTTTACTACAGCCTTCAC
GTACTCATATCAGACACATAGAGACAAGATAGTACGAGAAGGTGGTGGCG
ACAATCAACGCTTACTATGCGTCACACACATGCTGACAGCCGCTGGACAT
TTCCCTATCAGGGTTCTGTTGGGAGCAGCACTGCCGACTAGCACTATTAA
TAGCACTATTAATAATAATAATAGCGTTTAAAGAAAAATCAGAACGCGCC
TATACTGACCATCATCATCCCCCAGTCAGGAGGAAAAAAATGTCAAAACG
TTTAGTTAGGTGGGGTCATAGATAGGCTGCCAATAATATACAAAACTTTT
GTTAGACCGACCCCACTCACTCGGGTATGGTTTTCAATCTTTTCTTTTCT
ACACACCCTGGAAAATGTTTTTGTTTTTTTCCCGTCCCCGTTTGAGTCTG
AAAAAAAAATGGTTTGTGTTGTTGGTGAAACATTGTTATTATACCTGTCT
CGCGAAATGTTCAACAGTACAGGGCAAAGTGTAGATTGACTGGTCGATGC
CCTACCTGTCTAGCACATTAATCAATGTTTTATCAGAGTGTTCTATTGGT
AATACCGTCCGCATTACATTATTATCTGCTCCGCATCGTATAGCAGACAG
ACTGACGCTACACTATACTACTTCGCGGTTGAGGCCATGTCATGAGGCCA
ATAACCCAAATTTTTGTAGAGGGAAAGGTTGACCCGGCCGATTTCTGCTC
TTGAACGCTTAAAAACTGCGAAAACGTTCGGATAGCCCTACAAGAGATAG
ATTTGAAAGTTCCAATGGTGCGGCTCAATCGGATCGAGCTGCGTCCGAAG
CGCGCATCAGCCTAGATTCGTCGAGAAAAACTTAAGCGCACTACTTCTGT
TTTGTGAAGAGATATATCGACTAGATTATAGCCGGGGTTGGTTTCGCCTC
GGGAATTCTATAAAAGGAGGTTCTTACGGCGTCTTCGAATACGATATGCG
TAGAGCTACCATGCAGCCCTGCTGCTTCGTTATGCACCGCCAGTCCTGAG
CTTGATTCCTATTGTTACGAACCTAATACTATACTGTTCATACTAATAGT
TTGAAGAAAATACAGAACGCACCTAGACCTTCTGAGCATCCCCCAGTCAG
GGGGAAAAAATGTCAAAATGTTCAGGTCGGCTCAAAGGCTGCAAATACAA
AACCTCTTCATGGCATTCAAACGGGTTCCCCTATGGTAGGGCCGTTGGGT
CAACAGTATAATATCGGGGAGAAGCCCACCGTTGTACTGTACACTTACTA
CATTGATCGCCATGCAGGGACACCATAAAAACAGCCAAGACAAAACAACA
GTAGTACATCATCAAACAATAAAGACGAATCCAATACAACATTTGAAACG
ATTACAGAGGACCACGGCGATGTAGGCATAATCCAAGTACACGAATCCGT
ATTCACCTGGAAGTAGACGAAAAGCAGTAGGCGATCACACAAGGAGGTAG
TTGTTGCATTCTGGTACGAATAGTAGTTATAATAATTACTATGATAGGAG
TTTTATAGTAGTAGTAGATGTTTCTTTATGAAAGCGAGGTCAATCCCGCC
TGCCACGGTGTGTAACGCCGAAGGAGTTTTGAATTGTTCTACTAGGTCGC
CCTACGAATACAATCACCCGATCCAGGAATTCCTTTCGTTGTCCCTTCGG
TTAAAAAAAACTAACCCCAGAAAATATCGGGGGGGGCAGGGAATGGAAAC
TTTTAATCCCCCTAAAAACTAAAAAGTTTTGGTTCTTTCGAATACGAGTT
AATTTAAGTAAGGAGAGACGAAATAATTCGTTATTATTTGGCTTTAGAGT
ACTAATTTTGTTTGCACTTTGTTCTTAACAGACTATCTTCCTATATATTA
TATATCGGGAGTCAAAAATCCGGTTAGGAGGGGAGAGGAGATTTCTAGAC
GAGGATTCGAAAAAGAAACCAGTAACCAGAGCAGCTCTTAGCTCTTCCGA
AGCCACCAGGATGAGTGCTATTTTTTGCACCCAAGTCTTATGCTTTCAGA
GGTGACATCAATCCTTGAGTAATAGTAATAATGTAATAATAGCATCGGGA
CCAAGAAGGACCAGCGGATCGGTCTACTCGTAGACAGTTGAACATCTTCC
TGTTATGGAATACTTCGGTACCTGGTAAGATAAGCTATTCTTGATACAGG
TGCAGGTGCGACTTATTGTGTGTAACGATGGTGTTCAGGAATCCCTCGGA
TATTGCATACACCCCATCAACCTCCCGCACCTGCGATCTCAATTTGGACT
CGCTTGATTTTTGCCTCTCATCTCCCTCAGCAATGTACAAGATGCTTAAG
AGGATGGACATCATCTCTCTCCTCGGCATCGAGAAGAAAGTCCGATCTTA
CGCTTCTTGCGTGGGACCGGACTACTTGTCCTCTCCCGATAGGGATGGGG
ACTCTGTAATTAAAGGTACAGCATGAGGCATTGTTTTCATCCATAATCGT
AGCAGTATCCAACCGCGAGTCAGTTGCTCCCAGGTACCCGAAATTATTTT
GAGGATTATACGTCAGGGTCGGTTCCAGTACCCGAAGACTCGCGACGTTC
TCGTGGATGACACGCGAGGTGAAGACCATGACTTTCCGATGTTGCGCTCC
TCAAAACTGGTTGTGCAAGGAAGACTACGTCGCCAGCTTCTTGATCTGTA
GAGCTCCGGCGCGGTGTGCGCCCGCATACTCCGAACGTTGCTGGGCCTGC
AAGCATAATTGCTTTCGAGAAATACCTTCTGATAGCATATGAAACACATA
TTAAACCCCAAACCCCGACAAGTTGCCGCCCGCCCAAACCCCAAACTATC
CTTTCCTTGGACGCAGCCATATCGCGAATGTATGAAAGTCTCTCTTCCGA
AGACCGTGGCGCCTTTGAAAGGTTCCTCGCGTTTGAGAGGTTTATCGCTG
GCGCCCGGTCACGCGCGGAGGGCCGCGCTGCGACCGCGGGGGATGGCGGC
GCGGGACAGCCACTCGCGGAGGGTCACAACCCGGAACGGGCACCCGCGGA
GGATGGCGGCGCGGGACAGCCACCCGCGGACGATGGTGGAGCGGGGCGGC
CACCCGCA

Coding sequence (CDS) from alignment at F-serratus_M_contig1444:110762..116169-

>mRNA_F-serratus_M_contig1444.3157.1 ID=mRNA_F-serratus_M_contig1444.3157.1|Name=mRNA_F-serratus_M_contig1444.3157.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig1444:110762..116169- (Fucus serratus male)
ATGCCAGGTCTTAGGCCCTCCTTCTGGAGGCCAGAACGGCCGTGGCGCCT
TAGATGCCAGGTCTTAGGCCCTCCTTCTGGAGGCCAGAACGGCCGTGGCG
CCTTAGGCCAAACAACTACAAAGCGGGCCGTACACATCCTGCGATAGCCA
AACGGGAGGAATGCTTCAGCAAGGGCCAAACAACTACAAAGCGGGCCGTA
CACATCCTGCGATAGCCAAACGGGAGGAATGCTTCAGCAAGGCAATGTAC
AAGATGCTTAAGAGGATGGACATCATCTCTCTCCTCGGCATCGAGAAGAA
AGTCCGATCTTACGCTTCTTGCGTGGGACCGGACTACTTGTCCTCTCCCG
ATAGGGATGGGGACTCTGTAATTAAAGCAATGTACAAGATGCTTAAGAGG
ATGGACATCATCTCTCTCCTCGGCATCGAGAAGAAAGTCCGATCTTACGC
TTCTTGCGTGGGACCGGACTACTTGTCCTCTCCCGATAGGGATGGGGACT
CTGTAATTAAAGCCATATCGCGAATGTATGAAAGTCTCTCTTCCGAAGAC
CGTGGCGCCTTTGAAAGGTTCCTCGCGTTTGAGAGGTTTATCGCTGGCGC
CCGGTCACGCGCGGAGGGCCGCGCTGCGACCGCGGGGGATGGCGGCGCGG
GACAGCCACTCGCGGAGGGTCACAACCCGGAACGGGCACCCGCGGAGGAT
GGCGGCGCGGGACAGCCACCCGCGGACGATGGTGGAGCGGGGCGGCCACC
CGCACCATATCGCGAATGTATGAAAGTCTCTCTTCCGAAGACCGTGGCGC
CTTTGAAAGGTTCCTCGCGTTTGAGAGGTTTATCGCTGGCGCCCGGTCAC
GCGCGGAGGGCCGCGCTGCGACCGCGGGGGATGGCGGCGCGGGACAGCCA
CTCGCGGAGGGTCACAACCCGGAACGGGCACCCGCGGAGGATGGCGGCGC
GGGACAGCCACCCGCGGACGATGGTGGAGCGGGGCGGCCACCCGCA