mRNA_F-serratus_M_contig1444.3156.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1444.3156.1
Unique NamemRNA_F-serratus_M_contig1444.3156.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1444.3156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1444contigF-serratus_M_contig1444:109911..110623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.5791326-CDS-F-serratus_M_contig1444:109910..1100531622929427.5791326-CDS-F-serratus_M_contig1444:109910..110053Fucus serratus maleCDSF-serratus_M_contig1444 109911..110053 -
1690962846.9570901-CDS-F-serratus_M_contig1444:109910..1100531690962846.9570901-CDS-F-serratus_M_contig1444:109910..110053Fucus serratus maleCDSF-serratus_M_contig1444 109911..110053 -
1622929427.594396-CDS-F-serratus_M_contig1444:110472..1106231622929427.594396-CDS-F-serratus_M_contig1444:110472..110623Fucus serratus maleCDSF-serratus_M_contig1444 110473..110623 -
1690962846.96727-CDS-F-serratus_M_contig1444:110472..1106231690962846.96727-CDS-F-serratus_M_contig1444:110472..110623Fucus serratus maleCDSF-serratus_M_contig1444 110473..110623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1444.3156.1prot_F-serratus_M_contig1444.3156.1Fucus serratus malepolypeptideF-serratus_M_contig1444 109911..110623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1444.3156.1

>prot_F-serratus_M_contig1444.3156.1 ID=prot_F-serratus_M_contig1444.3156.1|Name=mRNA_F-serratus_M_contig1444.3156.1|organism=Fucus serratus male|type=polypeptide|length=98bp
RPPAEDGGAGRPPAEDGGAGRPHAEDGGAGRRTVTTTEDGGAGRPSPTIV
GRPWAVASTMLAAAAPGGEIFPTVEAVESGMKGGERPPTPISPAVRGK
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mRNA from alignment at F-serratus_M_contig1444:109911..110623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1444.3156.1 ID=mRNA_F-serratus_M_contig1444.3156.1|Name=mRNA_F-serratus_M_contig1444.3156.1|organism=Fucus serratus male|type=mRNA|length=713bp|location=Sequence derived from alignment at F-serratus_M_contig1444:109911..110623- (Fucus serratus male)
CGGCCACCCGCGGAGGACGGTGGAGCGGGACGGCCACCCGCAGAGGACGG
TGGAGCGGGACGGCCACACGCAGAGGACGGTGGAGCGGGACGGCGAACCG
TGACGACCACGGAGGACGGCGGCGCTGGACGGCCCTCCCCCACGATTGTC
GGTGAGCACAGTCGTCTCGATGTCCCGTTTCCACAAGGTATATCTTTCTT
TGTAGTTGAAAGGTGAATCTTGTCGGTGGGTAGAAAAGTACTATGTAGTA
GAGATAACGCCAAGAACTGGTAGGAGATAAAATTGAAAAACCTGCGAAGG
TTGGTTGACGCATAGGCCACTGAGCGTACAGATGACGCATTATTAGATAC
ACTTAAGGTCAGAATACTCGTACCAATAAATGAATCTGCCGCATCATACC
ATTGTAAGAGCGGTTACCACGTTGGTTTCGACTTATCCCCGCGACACCGC
CAAGATGGATAGATAATTGTAGCCGTCCTAGATCTCATCAGGTTGCGTTT
TTGCTTGGCGACGTTCACGTCTATAGTCTTCATCCTATTTACCTGTTCAC
CTCCCCCATTCCCACTGTAGGACGCCCTTGGGCCGTGGCTTCGACCATGC
TCGCAGCAGCTGCGCCGGGAGGCGAAATTTTCCCTACCGTGGAAGCCGTG
GAAAGCGGCATGAAGGGTGGAGAAAGACCGCCAACTCCAATCTCGCCGGC
CGTAAGAGGCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1444:109911..110623-

>mRNA_F-serratus_M_contig1444.3156.1 ID=mRNA_F-serratus_M_contig1444.3156.1|Name=mRNA_F-serratus_M_contig1444.3156.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1444:109911..110623- (Fucus serratus male)
CGGCCACCCGCGGAGGACGGTGGAGCGGGACGGCCACCCGCAGAGGACGG
TGGAGCGGGACGGCCACACGCAGAGGACGGTGGAGCGGGACGGCGAACCG
TGACGACCACGGAGGACGGCGGCGCTGGACGGCCCTCCCCCACGATTGTC
GCGGCCACCCGCGGAGGACGGTGGAGCGGGACGGCCACCCGCAGAGGACG
GTGGAGCGGGACGGCCACACGCAGAGGACGGTGGAGCGGGACGGCGAACC
GTGACGACCACGGAGGACGGCGGCGCTGGACGGCCCTCCCCCACGATTGT
CGGACGCCCTTGGGCCGTGGCTTCGACCATGCTCGCAGCAGCTGCGCCGG
GAGGCGAAATTTTCCCTACCGTGGAAGCCGTGGAAAGCGGCATGAAGGGT
GGAGAAAGACCGCCAACTCCAATCTCGCCGGCCGTAAGAGGCAAGGACGC
CCTTGGGCCGTGGCTTCGACCATGCTCGCAGCAGCTGCGCCGGGAGGCGA
AATTTTCCCTACCGTGGAAGCCGTGGAAAGCGGCATGAAGGGTGGAGAAA
GACCGCCAACTCCAATCTCGCCGGCCGTAAGAGGCAAG
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