mRNA_F-serratus_M_contig1442.3151.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1442.3151.1
Unique NamemRNA_F-serratus_M_contig1442.3151.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: D7FM77_ECTSI (Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM77_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 6.100e-72
Identity = 127/235 (54.04%), Postives = 153/235 (65.11%), Query Frame = 1
Query:    1 NDPTAKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPG-------------EKKSTG---EQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLKDGQKRHVHTLTRPIEAGDSANQSEVS-----------EGDGRQCVEWKTVEVNP 624
            NDPTAK+CQLATAAI GGASCRTWVFRGF+ED GALKF+ DRRSQK+PEIAADPAGEVCF L KTREQFRVKGRL+VV  GES+E LAKAR+HQWTQISP+S+ASF T   PG             +  +TG   E ++    G +E+ S  E        S+EFCLVLLWP+ VDHL L DGQ R +H +T   + G +      +           +G  +  + W T+ VNP
Sbjct:   27 NDPTAKYCQLATAAIGGGASCRTWVFRGFYEDKGALKFVTDRRSQKVPEIAADPAGEVCFCLKKTREQFRVKGRLQVVDAGESDEALAKARRHQWTQISPASQASFETSLIPGLEVPPEPQTDHSDDAGATGTTQEGSQTHRRGGEEEASVSEGDASRSSVSDEFCLVLLWPSFVDHLRLVDGQSRSIHKITGDRDGGGAILAGVTAAAAMKGARGGTDGVPQSPITWVTMAVNP 261          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: UPI000EFD25FA (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFD25FA)

HSP 1 Score: 124 bits (312), Expect = 2.770e-31
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 1
Query:    7 PTAKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLK-DGQKRHVHTLTRPIEAGDSANQSEVSEGDGRQCVEWKTVEVNP 624
            P +++ QLAT   +G  + RT VFRGFW D+  L  I DRRS+KI +IA +PA E C+Y  KTREQFR+ G+L VV    ++  L  A +  W QIS S+RA F  P+               +A R +D+     +     P  +FCL+LL  + VDHL L+ + Q RH++T T     G+S               +W+   VNP
Sbjct:   56 PFSRYFQLATVRPDGTPANRTVVFRGFWADSNQLMMIGDRRSEKIEQIAENPAAEACWYFAKTREQFRLCGQLTVVTADTAHTGLVDAHQRLWQQISDSARAQFCWPYP--------------KAPRADDQDFSPPSPDEQMPPPQFCLLLLAVDSVDHLELRGEPQNRHLYTKTASSAQGNSQ--------------QWQVTAVNP 234          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: UPI0020179218 (pyridoxamine 5'-phosphate oxidase family protein n=2 Tax=Acaryochloris marina TaxID=155978 RepID=UPI0020179218)

HSP 1 Score: 122 bits (307), Expect = 5.350e-31
Identity = 75/173 (43.35%), Postives = 102/173 (58.96%), Query Frame = 1
Query:   13 AKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLKDG-QKRHVHTLT 528
            A++ QLAT      A+ RT VFRGF ED+  LKF+ DRRS+K+ +IA +P G +C+Y  KTREQFR+ G+L+VV   E+N  L   R+  W  +S  +R+ FA P  PG+ KS  E             S++E   C   P +EFCL+LL P  VDHL L++    R  +TLT
Sbjct:   25 ARYAQLATVQANRPAN-RTVVFRGFLEDSNTLKFVTDRRSKKVEQIAENPWGALCWYFPKTREQFRISGKLKVVTAIEANSELLHLREVAWLALSEGARSQFAWPH-PGQPKSESEA------------SSQESITCKT-PLDEFCLLLLTPQEVDHLELREKPHHRCGYTLT 182          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A5B8MFA9_9CHLO (Pyridoxal 5'-phosphate synthase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFA9_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 2.340e-30
Identity = 77/205 (37.56%), Postives = 110/205 (53.66%), Query Frame = 1
Query:   13 AKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDK-SAEEETGCPGEPSNEFCLVLLWPNRVDHLVLKDGQKRHVHTLTRPIEAGDSANQSEVSEGDGRQCVEWKTVEVNP 624
            A++ QLAT   +G  S RT V+RGF EDT  L F+ DRRS+K+ E+ A+P  E+C+Y  +TREQ+R+ G++ VV  G+ +E L  AR + W ++S  +R  FA PF PG            E GRD+   S +        P +EFCL++L P+ VDHL LK  ++      T     GDS  ++            W  + VNP
Sbjct:   23 ARYAQLATVREDGKPSNRTVVYRGFLEDTAKLTFVTDRRSKKVNELGANPWVELCWYFPQTREQYRIAGKMRVVQVGDGDEGLLGARGNAWRRLSDGARGQFAWPF-PGL-----------ERGRDDSAFSPDPPVTQDQSPLDEFCLLVLDPDHVDHLNLKSNERCVFSRAT-----GDSGGEA------------WDQLRVNP 198          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A2T1CRG1_9CYAN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CRG1_9CYAN)

HSP 1 Score: 119 bits (297), Expect = 1.600e-29
Identity = 77/176 (43.75%), Postives = 102/176 (57.95%), Query Frame = 1
Query:    7 PTAKFCQLATAAIEGGASCRTWVFRGFWEDT-GALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEE-ETGCPGEPSNEFCLVLLWPNRVDHLVLK-DGQKRHVHTL 525
            P +++ QLAT    G  + RT VFRGF++D    LK I D RS KI +I   P  EVC+Y TKTREQFR+ G+L+++   E++  L KARK  W ++S S+R+ F  P  P +  S              DKSA E E     +P   FCL+LL P RVDHL LK D Q+R ++TL
Sbjct:   20 PYSRYFQLATVNSAGYPANRTVVFRGFFDDEQNRLKIITDARSAKIQDIEHQPLAEVCWYFTKTREQFRILGKLQLITVAETDLNLQKARKITWYELSDSARSQFTWP-DPAQPMS--------------DKSAFELEPPDANDPLANFCLLLLTPERVDHLQLKGDPQQRCLYTL 180          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A563VW10_9CYAN (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VW10_9CYAN)

HSP 1 Score: 119 bits (297), Expect = 1.730e-29
Identity = 76/174 (43.68%), Postives = 100/174 (57.47%), Query Frame = 1
Query:    7 PTAKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLK-DGQKRHVHTL 525
            P + + QLAT   EG  + RT VFRGF E T  L+FI D RSQK   +   P GE+C+Y TKTREQFR+ G L +V   ESN  L KAR+  W  IS S+R  FA    PGE + T  +A       + D  +E++      P + FCL+LL P +VD L L+ D Q R+++ L
Sbjct:   23 PYSGYVQLATIDPEGLPTNRTVVFRGFLEQTNQLQFITDTRSQKYIHLQQKPWGEICWYFTKTREQFRIAGNLALVTSQESNSDLLKAREIMWQNISDSARIQFAW-ANPGEVRETTPEA------FNPDPPSEKQ------PVDNFCLLLLEPKKVDRLELRGDPQNRYLYEL 183          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A845Y9A3_9CYAN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845Y9A3_9CYAN)

HSP 1 Score: 118 bits (296), Expect = 2.250e-29
Identity = 75/178 (42.13%), Postives = 104/178 (58.43%), Query Frame = 1
Query:    1 NDPTAKFCQLATAAIEGGASCRTWVFRGFWEDT-GALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSA-EEETGCPGEPSNEFCLVLLWPNRVDHLVLK-DGQKRHVHTL 525
            ++P +++ QLAT   EG  S RT VFRGF ED   ++K I D RS KI +I     GE+C+Y TKTREQFR++G L +V D + +  L KARK  W  +S ++R+ FA    PG+  +              DKSA + E   P  P + FCL+LL P +VDHL L+ D Q+R ++ L
Sbjct:   18 SEPHSRYFQLATMTPEGYPSNRTVVFRGFLEDDRSSVKIITDVRSAKIQDIERQAIGEICWYFTKTREQFRIQGVLRLVTDQDKDSDLLKARKITWHNLSDAARSQFAW-AAPGQPAT--------------DKSAFDVEPPAPNLPLDTFCLLLLVPQKVDHLQLRGDPQQRCIYQL 180          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A7S3CC54_9CHLO (Pyridoxal 5'-phosphate synthase (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CC54_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 4.320e-29
Identity = 65/167 (38.92%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    7 PTAKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLKDGQK 507
            P A++ QLAT   +G  + RT V+RGF +DT  L F+ DRRS+KI ++ A+P+ E+C+Y  +TREQ+R+ G + VV   + +E + +AR   W ++S  +R+ FA PF PG            E G D+   + +       P  EFCL++L P RVDHL LK  ++
Sbjct:   45 PYARYAQLATVREDGRPANRTIVYRGFLQDTSKLTFVTDRRSKKIGKLRANPSVELCWYFPQTREQYRIAGTMRVVKVDDEDEAMLRARGEAWKRMSDGARSQFAWPF-PGI-----------ERGVDDSAFSPDPVTADLPPLEEFCLLVLDPERVDHLSLKSNER 199          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A8J7AQ14_9CYAN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Romeria aff. gracilis LEGE 07310 TaxID=915328 RepID=A0A8J7AQ14_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 1.660e-28
Identity = 72/171 (42.11%), Postives = 93/171 (54.39%), Query Frame = 1
Query:   16 KFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLK-DGQKRHVHTL 525
            ++ QLAT    G  + RT VFRGF ED+  L+F  DRRS+KI ++ A P GEVC+Y TKTREQFRV GRL +V    +   LA AR   W  +S S+R  FA P    E+                  + E     P +P  +FCL+LL P  VDHL L+ D Q R ++ L
Sbjct:   24 RYLQLATVRGSGQPANRTVVFRGFLEDSDCLQFAVDRRSEKIHQLEACPWGEVCWYFTKTREQFRVLGRLTLVDRDTAEPPLAAARDALWQNLSGSARKQFAWPHPQHERARKA--------------AFEPPQPDPNQPLPQFCLLLLAPETVDHLELQGDPQNRCIYEL 180          
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Match: A0A8J6WWZ6_9CYAN (Pyridoxamine 5'-phosphate oxidase family protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6WWZ6_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 1.750e-28
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 1
Query:    1 NDPTAKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEIAADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISPSSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFCLVLLWPNRVDHLVLK 495
            + P A+F QLAT  + G  + RT VFRGF +DT  LKF+ D RS+K  +I  +P  E C+Y  KTREQFR+ G L ++   + +  L +ARK  W ++S ++R  FA P TPGE ++                +   +     EP   FCL+LL P RVDHL L+
Sbjct:   19 SQPEARFLQLATIQLNGQPANRTVVFRGFLDDTDQLKFVTDTRSEKTEQIEQNPKAEACWYFIKTREQFRIAGTLTLIRATDPDSALQQARKTAWQELSDAARLQFAWP-TPGEPRADA-------------AAFAPQPPDATEPLPYFCLLLLEPERVDHLELR 169          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1442.3151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM77_ECTSI6.100e-7254.04Pyridoxal 5'-phosphate synthase n=2 Tax=Ectocarpus... [more]
UPI000EFD25FA2.770e-3137.20pyridoxamine 5'-phosphate oxidase family protein n... [more]
UPI00201792185.350e-3143.35pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A5B8MFA9_9CHLO2.340e-3037.56Pyridoxal 5'-phosphate synthase n=1 Tax=Chloropico... [more]
A0A2T1CRG1_9CYAN1.600e-2943.75Pyridoxamine 5'-phosphate oxidase n=1 Tax=Pleuroca... [more]
A0A563VW10_9CYAN1.730e-2943.68Pyridoxamine 5'-phosphate oxidase-related, FMN-bin... [more]
A0A845Y9A3_9CYAN2.250e-2942.13Pyridoxamine 5'-phosphate oxidase n=1 Tax=Symploca... [more]
A0A7S3CC54_9CHLO4.320e-2938.92Pyridoxal 5'-phosphate synthase (Fragment) n=1 Tax... [more]
A0A8J7AQ14_9CYAN1.660e-2842.11Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A8J6WWZ6_9CYAN1.750e-2840.00Pyridoxamine 5'-phosphate oxidase family protein n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1442contigF-serratus_M_contig1442:120438..122261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue9.5e-59
Seed eggNOG ortholog2880.D7FM77
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004733,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009987,GO:0010144,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0042364,GO:0042816,GO:0042818,GO:0042819,GO:0042822,GO:0042823,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046184,GO:0046483,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097164,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.pyridoxamine-phosphate oxidase activity
EggNOG OGsCOG5135@1,KOG4558@2759
EC1.4.3.5
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size758
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1442.3151.1prot_F-serratus_M_contig1442.3151.1Fucus serratus malepolypeptideF-serratus_M_contig1442 120568..122261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.1117246-UTR-F-serratus_M_contig1442:120437..1205671622929427.1117246-UTR-F-serratus_M_contig1442:120437..120567Fucus serratus maleUTRF-serratus_M_contig1442 120438..120567 -
1690962846.7403433-UTR-F-serratus_M_contig1442:120437..1205671690962846.7403433-UTR-F-serratus_M_contig1442:120437..120567Fucus serratus maleUTRF-serratus_M_contig1442 120438..120567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.1262019-CDS-F-serratus_M_contig1442:120567..1210311622929427.1262019-CDS-F-serratus_M_contig1442:120567..121031Fucus serratus maleCDSF-serratus_M_contig1442 120568..121031 -
1690962846.7539768-CDS-F-serratus_M_contig1442:120567..1210311690962846.7539768-CDS-F-serratus_M_contig1442:120567..121031Fucus serratus maleCDSF-serratus_M_contig1442 120568..121031 -
1622929427.1443465-CDS-F-serratus_M_contig1442:122098..1222611622929427.1443465-CDS-F-serratus_M_contig1442:122098..122261Fucus serratus maleCDSF-serratus_M_contig1442 122099..122261 -
1690962846.771004-CDS-F-serratus_M_contig1442:122098..1222611690962846.771004-CDS-F-serratus_M_contig1442:122098..122261Fucus serratus maleCDSF-serratus_M_contig1442 122099..122261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1442.3151.1

>prot_F-serratus_M_contig1442.3151.1 ID=prot_F-serratus_M_contig1442.3151.1|Name=mRNA_F-serratus_M_contig1442.3151.1|organism=Fucus serratus male|type=polypeptide|length=209bp
NDPTAKFCQLATAAIEGGASCRTWVFRGFWEDTGALKFIADRRSQKIPEI
AADPAGEVCFYLTKTREQFRVKGRLEVVADGESNERLAKARKHQWTQISP
SSRASFATPFTPGEKKSTGEQAEEEEAGRDEDKSAEEETGCPGEPSNEFC
LVLLWPNRVDHLVLKDGQKRHVHTLTRPIEAGDSANQSEVSEGDGRQCVE
WKTVEVNP*
back to top

mRNA from alignment at F-serratus_M_contig1442:120438..122261-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1442.3151.1 ID=mRNA_F-serratus_M_contig1442.3151.1|Name=mRNA_F-serratus_M_contig1442.3151.1|organism=Fucus serratus male|type=mRNA|length=1824bp|location=Sequence derived from alignment at F-serratus_M_contig1442:120438..122261- (Fucus serratus male)
AATGATCCAACCGCCAAGTTCTGTCAGCTCGCAACGGCGGCAATCGAAGG GGGCGCGTCCTGTCGAACGTGGGTGTTCAGAGGCTTCTGGGAAGATACTG GCGCTCTGAAGTTTATAGCGGACAGGCGAAGCCAGAAGATTCCCGAAATT GCCGCCGATCCCGGTGAGGAGGCGACAACATGATGCGTCGCGCGTTACGG TTAATTTAATCGTCGGGATCATTAGCCGTCGCTGCGGTAATATGATCTTC TCCTTTGTTTGAGTGTCATCGAGGTACTACTCAGTTCCGGGACCATCGCG ATGGACAAACAGTAACGGCAACGCTCTTCAATCCTACCCGCTGTGAGGGT CGGTTCTAACGAAGCCATAAATTTCCAAAGTTTGGACACTTTCTTCTACT GTTTGAAGGTTGCGAGTGAGGCGTTTCTTGCAAAGTTAGGAAACGTGCGG AGGTACTGATCCCCCCCCCTCACCAAAAAGTTCGTTCCATGAAGTTCGGA GCGCTCAAAGTTTTGGAAATCACGCTTGAATGCGCCGTATAGAAGCGCCC TCTATGATGGTTTTGGGGGGCCTAGCTTTGTGGGGAGGTGAATCGGAGAA GCACCAGTAAAATGACAGCCACAAGCCATAGCCATCCCATGACCTGAAAG TCGGCGTCGACTCTGAAGTGGCAACCTGTTGCTAAGAGAACTGAAGCACT GCTGTCGATGTGTATGTATACAGCCCACAGAGCTTTTTAACTGTGGCCAC GTACGCGTGTGTAGAGCAAATCATTTATCGCCTCAAGAGTCTCGTTTTGG TGGCAGTTCATCCAACGCTTATTGTGAATATGCCGGCCACAAGGTTACTG TTCGTCTAGAACATGGATTGTCCGTTACCGGTGTGAGTTGGTGGTCCTCG GGATCAAGAATTTGACTCAGCCAGTGCTTTACGACTGAAGTTGTCGGAGA GGGCGTTGTTTTAACCCCGTTCGAGGAAGTACCTAATGTTATACTCCTCG AACCAGTACGACGAATCATTTTCCAGATCGCCCGAAAAAGCCTGAAACGC CGTTAGGACTAATTTTCGAACTTTGGAGCAAATAATTTCCAACTTTTCAT TCCATGCTTAAGGAAAACGAGTGTTTGCGTTATAGAAGACATGGACCCTT TGTCGGCGTCGGGTCGAACAACGAGGGAGGGAGGGGGATACAAACGTTGT TCGATCTTTTCGTTCGTCGTTGCGTGGCAGCCGGCGAGGTCTGCTTCTAC CTCACCAAGACTCGCGAGCAGTTTCGCGTCAAGGGCAGGCTCGAGGTGGT CGCGGACGGGGAGAGCAACGAGAGACTAGCCAAGGCGAGGAAGCACCAGT GGACGCAGATTAGCCCGTCCTCTAGGGCCTCGTTCGCGACGCCCTTCACT CCGGGCGAAAAAAAGTCAACAGGGGAACAGGCAGAAGAAGAAGAGGCTGG AAGAGATGAAGACAAGAGTGCTGAAGAAGAGACCGGATGCCCGGGGGAAC CGAGTAACGAGTTCTGTCTTGTGCTGCTTTGGCCGAATCGAGTAGACCAC CTTGTCCTGAAGGATGGACAAAAGCGGCACGTGCATACACTAACTAGACC CATAGAAGCTGGCGACAGCGCGAATCAGAGCGAGGTGTCAGAGGGTGATG GGCGCCAGTGTGTCGAATGGAAAACGGTAGAGGTGAACCCCTGAATTCGA TTATGGTGCTTTTTCCGGCAACAGCTTTGCAACGTCAACGTCGGGCAGCC CCGGCGGTCTGCCTAGCGTCACTCCTGTCATTCACAGTGAGCATGTGTGT ATGTATGTATTTATTAAATTGCAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1442:120438..122261-

>mRNA_F-serratus_M_contig1442.3151.1 ID=mRNA_F-serratus_M_contig1442.3151.1|Name=mRNA_F-serratus_M_contig1442.3151.1|organism=Fucus serratus male|type=CDS|length=1254bp|location=Sequence derived from alignment at F-serratus_M_contig1442:120438..122261- (Fucus serratus male)
AATGATCCAACCGCCAAGTTCTGTCAGCTCGCAACGGCGGCAATCGAAGG
GGGCGCGTCCTGTCGAACGTGGGTGTTCAGAGGCTTCTGGGAAGATACTG
GCGCTCTGAAGTTTATAGCGGACAGGCGAAGCCAGAAGATTCCCGAAATT
GCCGCCGATCCCGAATGATCCAACCGCCAAGTTCTGTCAGCTCGCAACGG
CGGCAATCGAAGGGGGCGCGTCCTGTCGAACGTGGGTGTTCAGAGGCTTC
TGGGAAGATACTGGCGCTCTGAAGTTTATAGCGGACAGGCGAAGCCAGAA
GATTCCCGAAATTGCCGCCGATCCCGCCGGCGAGGTCTGCTTCTACCTCA
CCAAGACTCGCGAGCAGTTTCGCGTCAAGGGCAGGCTCGAGGTGGTCGCG
GACGGGGAGAGCAACGAGAGACTAGCCAAGGCGAGGAAGCACCAGTGGAC
GCAGATTAGCCCGTCCTCTAGGGCCTCGTTCGCGACGCCCTTCACTCCGG
GCGAAAAAAAGTCAACAGGGGAACAGGCAGAAGAAGAAGAGGCTGGAAGA
GATGAAGACAAGAGTGCTGAAGAAGAGACCGGATGCCCGGGGGAACCGAG
TAACGAGTTCTGTCTTGTGCTGCTTTGGCCGAATCGAGTAGACCACCTTG
TCCTGAAGGATGGACAAAAGCGGCACGTGCATACACTAACTAGACCCATA
GAAGCTGGCGACAGCGCGAATCAGAGCGAGGTGTCAGAGGGTGATGGGCG
CCAGTGTGTCGAATGGAAAACGGTAGAGGTGAACCCCTGACCGGCGAGGT
CTGCTTCTACCTCACCAAGACTCGCGAGCAGTTTCGCGTCAAGGGCAGGC
TCGAGGTGGTCGCGGACGGGGAGAGCAACGAGAGACTAGCCAAGGCGAGG
AAGCACCAGTGGACGCAGATTAGCCCGTCCTCTAGGGCCTCGTTCGCGAC
GCCCTTCACTCCGGGCGAAAAAAAGTCAACAGGGGAACAGGCAGAAGAAG
AAGAGGCTGGAAGAGATGAAGACAAGAGTGCTGAAGAAGAGACCGGATGC
CCGGGGGAACCGAGTAACGAGTTCTGTCTTGTGCTGCTTTGGCCGAATCG
AGTAGACCACCTTGTCCTGAAGGATGGACAAAAGCGGCACGTGCATACAC
TAACTAGACCCATAGAAGCTGGCGACAGCGCGAATCAGAGCGAGGTGTCA
GAGGGTGATGGGCGCCAGTGTGTCGAATGGAAAACGGTAGAGGTGAACCC
CTGA
back to top