mRNA_F-serratus_M_contig1441.3149.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1441.3149.1
Unique NamemRNA_F-serratus_M_contig1441.3149.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1441.3149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1441contigF-serratus_M_contig1441:192692..193004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929426.869361-UTR-F-serratus_M_contig1441:192691..1926981622929426.869361-UTR-F-serratus_M_contig1441:192691..192698Fucus serratus maleUTRF-serratus_M_contig1441 192692..192698 +
1690962846.614837-UTR-F-serratus_M_contig1441:192691..1926981690962846.614837-UTR-F-serratus_M_contig1441:192691..192698Fucus serratus maleUTRF-serratus_M_contig1441 192692..192698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929426.882353-CDS-F-serratus_M_contig1441:192698..1930041622929426.882353-CDS-F-serratus_M_contig1441:192698..193004Fucus serratus maleCDSF-serratus_M_contig1441 192699..193004 +
1690962846.6253157-CDS-F-serratus_M_contig1441:192698..1930041690962846.6253157-CDS-F-serratus_M_contig1441:192698..193004Fucus serratus maleCDSF-serratus_M_contig1441 192699..193004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1441.3149.1prot_F-serratus_M_contig1441.3149.1Fucus serratus malepolypeptideF-serratus_M_contig1441 192699..193004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1441.3149.1

>prot_F-serratus_M_contig1441.3149.1 ID=prot_F-serratus_M_contig1441.3149.1|Name=mRNA_F-serratus_M_contig1441.3149.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MHEHETQEAFGTGSDDRGMKSAGYGTIVERGALQLGVEELGLKQRPASSI
RLRKEVQEAPSDHEKEVQEAPPYPKQGTQGAPPGPAEEEREAISELEGET
QG
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mRNA from alignment at F-serratus_M_contig1441:192692..193004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1441.3149.1 ID=mRNA_F-serratus_M_contig1441.3149.1|Name=mRNA_F-serratus_M_contig1441.3149.1|organism=Fucus serratus male|type=mRNA|length=313bp|location=Sequence derived from alignment at F-serratus_M_contig1441:192692..193004+ (Fucus serratus male)
GTTGACGATGCACGAGCACGAGACGCAAGAGGCGTTTGGCACCGGCAGTG
ACGACCGCGGCATGAAGTCGGCGGGATATGGAACCATTGTCGAGAGAGGT
GCTCTGCAGCTCGGAGTAGAGGAGCTGGGGCTGAAGCAGCGGCCGGCATC
ATCAATAAGACTCAGAAAGGAAGTACAGGAGGCGCCATCGGATCACGAGA
AGGAAGTACAGGAGGCGCCGCCTTACCCCAAACAGGGGACACAAGGAGCG
CCGCCGGGTCCCGCGGAGGAGGAACGGGAGGCGATTTCGGAACTTGAAGG
GGAGACGCAGGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1441:192692..193004+

>mRNA_F-serratus_M_contig1441.3149.1 ID=mRNA_F-serratus_M_contig1441.3149.1|Name=mRNA_F-serratus_M_contig1441.3149.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1441:192692..193004+ (Fucus serratus male)
ATGCACGAGCACGAGACGCAAGAGGCGTTTGGCACCGGCAGTGACGACCG
CGGCATGAAGTCGGCGGGATATGGAACCATTGTCGAGAGAGGTGCTCTGC
AGCTCGGAGTAGAGGAGCTGGGGCTGAAGCAGCGGCCGGCATCATCAATA
AGACTCAGAAAGGAAGTACAGGAGGCGCCATCGGATCACGAGAAGGAAGT
ACAGGAGGCGCCGCCTTACCCCAAACAGGGGACACAAGGAGCGCCGCCGG
GTCCCGCGGAGGAGGAACGGGAGGCGATTTCGGAACTTGAAGGGGAGACG
CAGGGAATGCACGAGCACGAGACGCAAGAGGCGTTTGGCACCGGCAGTGA
CGACCGCGGCATGAAGTCGGCGGGATATGGAACCATTGTCGAGAGAGGTG
CTCTGCAGCTCGGAGTAGAGGAGCTGGGGCTGAAGCAGCGGCCGGCATCA
TCAATAAGACTCAGAAAGGAAGTACAGGAGGCGCCATCGGATCACGAGAA
GGAAGTACAGGAGGCGCCGCCTTACCCCAAACAGGGGACACAAGGAGCGC
CGCCGGGTCCCGCGGAGGAGGAACGGGAGGCGATTTCGGAACTTGAAGGG
GAGACGCAGGGA
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