mRNA_F-serratus_M_contig144.3147.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 336 bits (862), Expect = 1.800e-114 Identity = 171/187 (91.44%), Postives = 178/187 (95.19%), Query Frame = 3
Query: 42 MSLSRTGSIDPFRRAMHDVFDSMERDLIAPSGMSSRFPTIDFPGSSIGLVSAVPSTGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPIGDGEGATPSGN 602
MSLSR GSIDPFRRAMHDVFDSMERDL+APSGMSSRF T+DFPGSS+ LVSAVPS G EGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESG+LTVTGERKQEREEKSEG+NEQRKYHF+ERSYGKTTRSVRLPDTA TSKASA YVNGVLK+NFPKREPPSARRLQIPIGDGEGA PS N
Sbjct: 1 MSLSRAGSIDPFRRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKREPPSARRLQIPIGDGEGAAPSEN 187
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.490e-53 Identity = 95/169 (56.21%), Postives = 123/169 (72.78%), Query Frame = 3
Query: 87 MHDVFDSMERDLIAPSGMSSRFPTI-----DFPGSSIGLVSAVPSTGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPIGDG 578
++DVF S+ER+++AP G++SRFPT FP S G S LGM+LDFHET G+EL ADLPGMKKED+ +D+D ESG+LTV+GERK E+EEK +G + RKYHFVERSYGKT+RSVRLP+ ADT+ A+A +GVL + FPK+E P + R +IP+G G
Sbjct: 20 INDVFGSIEREMLAPWGLASRFPTTRDMFPTFPTSLFGDGSRS--------LGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKEAPVSSRFRIPLGGG 180
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 164 bits (415), Expect = 3.900e-46 Identity = 94/197 (47.72%), Postives = 122/197 (61.93%), Query Frame = 3
Query: 93 DVFDSMERDLIAPSGMSSRFPTIDFPGSSIGLVSA-------------------------------VPSTG----REGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPIG 572
DVF S+ER+++AP G++SRFPT S V VPS R+G L MNLDFHET G+EL ADLPGMK+ED+ +D+D ESG+LTV+GERK EREEK + + RKYHFVERSYGKT+RSVRLP+ A+T+ A+A +GVL + FPK+E P++ R +IP+G
Sbjct: 7 DVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 203
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 159 bits (402), Expect = 6.140e-45 Identity = 84/154 (54.55%), Postives = 115/154 (74.68%), Query Frame = 3
Query: 120 LIAPSGMSSRFPTIDFPGSSIGLVSAVPST-GREGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPIG 572
++AP G++ RFPT + +V +V S+ R+G L MNLDFHET G+EL ADLPGMK+ED+ +D+D ESG+LTV+GERK +REEK + + RKYHFVERSYGKT+RSVRLP+ A+T+ A+A +GVL + FPK+E P++ R +IP+G
Sbjct: 1 MLAPWGLAFRFPT------ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 148
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A3C1Z549_9BACT (Heat-shock protein Hsp20 n=2 Tax=Nitrospira TaxID=1234 RepID=A0A3C1Z549_9BACT) HSP 1 Score: 100 bits (250), Expect = 1.120e-22 Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = 3
Query: 69 DPFRRAMHDVFDSMERDLIAPSGMSSRFPTIDFPGSSIGLVSAVPSTGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPI 569
DPFR + D+ D + R + P+ G S+G V + +D ET Y + A+LP +K+ED+KV + E G+LT+ GERKQE+EEK +KYH VERSYG+ R+ LPDT D SK A Y +G+L L+ PK E +++++ +
Sbjct: 7 DPFRE-LQDMSDRLNRMIANPAS-----------GGSVGQGKEVMTVAD---WTPTVDISETEAEYAIKAELPEVKREDVKVTV--EDGVLTIQGERKQEKEEKG------KKYHRVERSYGRFVRTFTLPDTVDESKVKAEYADGILHLHLPKSEKAKPKQIEVKV 150
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A0S7YIY3_9DELT (SHSP domain-containing protein n=1 Tax=Deltaproteobacteria bacterium SG8_13 TaxID=1703398 RepID=A0A0S7YIY3_9DELT) HSP 1 Score: 98.6 bits (244), Expect = 7.400e-22 Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 3
Query: 69 DPFRRAMHDVFDSMERDLIAPSGMSSRFPTIDFPGSSIGLVSAVPSTGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPI 569
DPFR M D+FD R L P S V +TG +D ET++ + + A++P ++KED+KV +D+ GILT+ GERKQE+EEK+ +KYH VER YG TRS LPD D SK +AA+ +G+L L PK E + +++ +
Sbjct: 7 DPFRE-MEDMFDRYSRALSFPRRGSQE----------------VMATGD---WAPRVDIAETDREFTIKAEIPDVRKEDVKVTVDN--GILTIKGERKQEKEEKN------KKYHRVERWYGSFTRSFTLPDNVDESKITAAFKDGMLNLTIPKTEASKPKAIEVQV 145
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A1F9FSV3_9DELT (SHSP domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9FSV3_9DELT) HSP 1 Score: 98.6 bits (244), Expect = 7.600e-22 Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 3
Query: 237 LDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPIG 572
+D ET + Y L A+LP MKKEDIK+ + E G+LT+TGERK EREEK+ + YH VERSYG+ RS LP D +K +A+Y NGVL + PK PP R +I IG
Sbjct: 44 VDIAETPEAYTLHAELPAMKKEDIKLAV--EDGVLTLTGERKLEREEKN------KTYHRVERSYGRFQRSFTLPAAVDEAKVTASYDNGVLNVLIPKAAPPPPRSKEIKIG 147
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3) HSP 1 Score: 99.4 bits (246), Expect = 8.510e-22 Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 3
Query: 78 RRAMHDVFDSMERDLIA------------PSGMSSRFPTIDFPGSS-IG-LVSAVPSTG--REGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQI 563
RR M +F+ ER A P S+ + D PG + +G L A PS+ +D HE++ GY +SADLPGMKK++I V+ E+GILT++GE+KQE +EKS+ YH ERS G+ +R++RLP AD+SKA+A Y +GVL L+ KR P+ R+ I
Sbjct: 7 RRDMDRLFNQFERGFPASWQSPMLQHQQAPMLESAHDSSKDAPGDTQVGALTPAWPSSRWMTSPSTSFAVDVHESSDGYHISADLPGMKKDEISVNC--ENGILTISGEKKQE-QEKSDHT-----YHVFERSVGRVSRTLRLPRDADSSKANAKYTDGVLTLDIAKRALPAGSRIAI 176
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: D8PFX6_9BACT (Heat shock protein, Hsp20 family n=5 Tax=Nitrospira TaxID=1234 RepID=D8PFX6_9BACT) HSP 1 Score: 96.7 bits (239), Expect = 4.540e-21 Identity = 56/135 (41.48%), Postives = 77/135 (57.04%), Query Frame = 3
Query: 195 AVPSTGREGGLGMNL----------DFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSARRLQIPI 569
A PSTG G G + D ET Y + A+LP +KKED+KV + E +LT+ GERKQE+E+K +KYH +ERSYG+ RS LPD+ D SK A Y +G+L L+ PK E +++ + I
Sbjct: 24 ARPSTGTPAGQGKEVMTVADWTPTVDISETESEYAIKAELPEVKKEDVKVTV--EDAVLTIQGERKQEKEDKG------KKYHRIERSYGRFVRSFTLPDSVDESKVRAEYADGILHLHLPKSEKAKPKQIDVKI 150
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Match: A0A212UEH6_9BACT (HSP20 family protein n=1 Tax=Hymenobacter gelipurpurascens TaxID=89968 RepID=A0A212UEH6_9BACT) HSP 1 Score: 98.2 bits (243), Expect = 4.800e-21 Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 3
Query: 195 AVPSTGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGILTVTGERKQEREEKSEGNNEQRKYHFVERSYGKTTRSVRLPDTADTSKASAAYVNGVLKLNFPKREPPSAR-RLQIPIGDGEGATPSGN 602
++ S GR ++D +ET K YE+ A LPGMK+EDIKVD G LTVTGER EE ++R YH VE SYG RS++LPDT D S SAA+ +GVL++ PK + + R R+++ G +PSG
Sbjct: 29 SIASRGRVSTFSPHIDAYETEKAYEIEASLPGMKREDIKVDF--HQGRLTVTGERHFRNEE------QKRHYHLVESSYGSFNRSLQLPDTVDASHISAAFEDGVLRITVPKDQQKTMRHRIEV---RGTQGSPSGG 154 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig144.3147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig144.3147.1 >prot_F-serratus_M_contig144.3147.1 ID=prot_F-serratus_M_contig144.3147.1|Name=mRNA_F-serratus_M_contig144.3147.1|organism=Fucus serratus male|type=polypeptide|length=188bp MSLSRTGSIDPFRRAMHDVFDSMERDLIAPSGMSSRFPTIDFPGSSIGLVback to top mRNA from alignment at F-serratus_M_contig144:762281..764527+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig144.3147.1 ID=mRNA_F-serratus_M_contig144.3147.1|Name=mRNA_F-serratus_M_contig144.3147.1|organism=Fucus serratus male|type=mRNA|length=2247bp|location=Sequence derived from alignment at F-serratus_M_contig144:762281..764527+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig144:762281..764527+ >mRNA_F-serratus_M_contig144.3147.1 ID=mRNA_F-serratus_M_contig144.3147.1|Name=mRNA_F-serratus_M_contig144.3147.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig144:762281..764527+ (Fucus serratus male)back to top |