mRNA_F-serratus_M_contig144.3143.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig144.3143.1
Unique NamemRNA_F-serratus_M_contig144.3143.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 177 bits (448), Expect = 8.650e-55
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 2
Query:    2 RRAMHDVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            RRAMHDVFDSMERDLMAPSGMSSRF T+DFPGSS+ LVS VPSMG EGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK
Sbjct:   13 RRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 107          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.940e-24
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 2
Query:   11 MHDVFDSMERDLMAPSGMSSRFPTI-----DFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            ++DVF S+ER+++AP G++SRFPT       FP S  G  S          LGM+LDFHET  G+EL ADLPGMKKED+ +D+D ESGVLTV+GERK
Sbjct:   20 INDVFGSIEREMLAPWGLASRFPTTRDMFPTFPTSLFGDGSR--------SLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 108          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.160e-19
Identity = 56/127 (44.09%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   17 DVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVST-------------------------------VPSMG----REGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            DVF S+ER+++AP G++SRFPT      S   V T                               VPS+     R+G   L MNLDFHET  G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK
Sbjct:    7 DVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 133          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.070e-19
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   44 LMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            ++AP G +SRFPT     +   + S   S+ R+G   L MNLDFHET  G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK
Sbjct:    1 MLAPWGFASRFPT-----ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 78          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-17
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   44 LMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            ++AP G++ RFPT     +   + S   S+ R+G   L MNLDFHET  G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK
Sbjct:    1 MLAPWGLAFRFPT-----ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 78          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6J0ZW59_9ROSI (17.3 kDa class I heat shock protein-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J0ZW59_9ROSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.740e-7
Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 2
Query:   23 FDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            F +    +  P  +  R P  DFP SS   ++ + +      +  ++D+ ET++ +   ADLPG+KKE++KV+I+ +  VL ++GERK
Sbjct:    8 FGNRRSSIFDPCSVDLRDPCKDFPFSSFSSLAAIHNPETSAFVNTHIDWKETSEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERK 94          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A1H0V210_9RALS (Heat shock protein Hsp20 n=2 Tax=Burkholderiaceae TaxID=119060 RepID=A0A1H0V210_9RALS)

HSP 1 Score: 54.3 bits (129), Expect = 7.410e-7
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 2
Query:    2 RRAMHDVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            RR +  +F + +RD          F    FP  + GL S +P MG     G  +DF ET+KGYE++ +LPG+ ++ I+V + +  G L V GE++
Sbjct:   33 RREVDRLFQNFDRD----------FKLTSFPRLTQGLASAMPDMGSMFSAGPAVDFVETDKGYEITMELPGLDEKSIEVKLSN--GGLVVKGEKR 115          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A7J9GB72_9ROSI (SHSP domain-containing protein n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GB72_9ROSI)

HSP 1 Score: 55.1 bits (131), Expect = 7.830e-7
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query:   20 VFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMN--LDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGER 283
            VFD    DL  P      F   DFP      V+++PS+ RE    +N  +D+ ET + +   ADLPGMKKE++KV+I+ +  VL ++GER
Sbjct:   16 VFDPFSLDLWDP------FKEFDFP-----TVTSLPSLSRENSAFVNTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDR-VLQISGER 93          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A2P6QIG0_ROSCH (Putative small heat shock protein HSP20 n=6 Tax=cellular organisms TaxID=131567 RepID=A0A2P6QIG0_ROSCH)

HSP 1 Score: 53.5 bits (127), Expect = 9.790e-7
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 2
Query:   17 DVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
            D++D   RD   PS   S FP  +FPG +   ++T             +D+ ET + +   ADLPG+KKE++KV+I+ +  VL ++GERK
Sbjct:   16 DLWDPF-RDFQFPSSSLSTFP--EFPGENSAFINT------------RIDWKETPEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERK 89          
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A212UEH6_9BACT (HSP20 family protein n=1 Tax=Hymenobacter gelipurpurascens TaxID=89968 RepID=A0A212UEH6_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.000e-6
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 2
Query:  119 TVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGER 283
            ++ S GR      ++D +ET K YE+ A LPGMK+EDIKVD     G LTVTGER
Sbjct:   29 SIASRGRVSTFSPHIDAYETEKAYEIEASLPGMKREDIKVDF--HQGRLTVTGER 81          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ8_FUCSE8.650e-5593.68Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
D7FUU6_ECTSI3.940e-2455.67Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5JFM4_9PHAE4.160e-1944.09HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JPQ3_9PHAE5.070e-1955.42HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
A0A6H5KKF0_9PHAE1.100e-1754.22HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6J0ZW59_9ROSI2.740e-732.9517.3 kDa class I heat shock protein-like n=1 Tax=H... [more]
A0A1H0V210_9RALS7.410e-734.74Heat shock protein Hsp20 n=2 Tax=Burkholderiaceae ... [more]
A0A7J9GB72_9ROSI7.830e-740.00SHSP domain-containing protein n=1 Tax=Gossypium h... [more]
A0A2P6QIG0_ROSCH9.790e-736.67Putative small heat shock protein HSP20 n=6 Tax=ce... [more]
A0A212UEH6_9BACT1.000e-652.73HSP20 family protein n=1 Tax=Hymenobacter gelipurp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig144contigF-serratus_M_contig144:708749..709034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2880.D7FUU6
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size288
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929426.2467773-UTR-F-serratus_M_contig144:708748..7087581622929426.2467773-UTR-F-serratus_M_contig144:708748..708758Fucus serratus maleUTRF-serratus_M_contig144 708749..708758 +
1690962846.3233514-UTR-F-serratus_M_contig144:708748..7087581690962846.3233514-UTR-F-serratus_M_contig144:708748..708758Fucus serratus maleUTRF-serratus_M_contig144 708749..708758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929426.2648113-CDS-F-serratus_M_contig144:708758..7090341622929426.2648113-CDS-F-serratus_M_contig144:708758..709034Fucus serratus maleCDSF-serratus_M_contig144 708759..709034 +
1690962846.33338-CDS-F-serratus_M_contig144:708758..7090341690962846.33338-CDS-F-serratus_M_contig144:708758..709034Fucus serratus maleCDSF-serratus_M_contig144 708759..709034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig144.3143.1prot_F-serratus_M_contig144.3143.1Fucus serratus malepolypeptideF-serratus_M_contig144 708759..709034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig144.3143.1

>prot_F-serratus_M_contig144.3143.1 ID=prot_F-serratus_M_contig144.3143.1|Name=mRNA_F-serratus_M_contig144.3143.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MHDVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMN
LDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK
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mRNA from alignment at F-serratus_M_contig144:708749..709034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig144.3143.1 ID=mRNA_F-serratus_M_contig144.3143.1|Name=mRNA_F-serratus_M_contig144.3143.1|organism=Fucus serratus male|type=mRNA|length=286bp|location=Sequence derived from alignment at F-serratus_M_contig144:708749..709034+ (Fucus serratus male)
CAGGCGAGCAATGCACGACGTGTTCGACTCTATGGAACGTGACCTCATGG CACCATCCGGGATGAGCTCTAGATTCCCCACTATCGACTTCCCCGGAAGC TCCATCGGCTTGGTCTCTACCGTCCCCAGTATGGGCCGTGAAGGAGGCCT CGGCATGAACCTCGACTTCCACGAGACCAACAAGGGCTACGAGCTGAGCG CCGATCTTCCCGGCATGAAGAAGGAGGATATCAAGGTGGACATCGACAGT GAGTCCGGGGTTCTGACCGTGACAGGAGAACGCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig144:708749..709034+

>mRNA_F-serratus_M_contig144.3143.1 ID=mRNA_F-serratus_M_contig144.3143.1|Name=mRNA_F-serratus_M_contig144.3143.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig144:708749..709034+ (Fucus serratus male)
ATGCACGACGTGTTCGACTCTATGGAACGTGACCTCATGGCACCATCCGG
GATGAGCTCTAGATTCCCCACTATCGACTTCCCCGGAAGCTCCATCGGCT
TGGTCTCTACCGTCCCCAGTATGGGCCGTGAAGGAGGCCTCGGCATGAAC
CTCGACTTCCACGAGACCAACAAGGGCTACGAGCTGAGCGCCGATCTTCC
CGGCATGAAGAAGGAGGATATCAAGGTGGACATCGACAGTGAGTCCGGGG
TTCTGACCGTGACAGGAGAACGCAAGATGCACGACGTGTTCGACTCTATG
GAACGTGACCTCATGGCACCATCCGGGATGAGCTCTAGATTCCCCACTAT
CGACTTCCCCGGAAGCTCCATCGGCTTGGTCTCTACCGTCCCCAGTATGG
GCCGTGAAGGAGGCCTCGGCATGAACCTCGACTTCCACGAGACCAACAAG
GGCTACGAGCTGAGCGCCGATCTTCCCGGCATGAAGAAGGAGGATATCAA
GGTGGACATCGACAGTGAGTCCGGGGTTCTGACCGTGACAGGAGAACGCA
AG
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