mRNA_F-serratus_M_contig144.3143.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 177 bits (448), Expect = 8.650e-55 Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 2
Query: 2 RRAMHDVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
RRAMHDVFDSMERDLMAPSGMSSRF T+DFPGSS+ LVS VPSMG EGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK
Sbjct: 13 RRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 107
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 3.940e-24 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 2
Query: 11 MHDVFDSMERDLMAPSGMSSRFPTI-----DFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
++DVF S+ER+++AP G++SRFPT FP S G S LGM+LDFHET G+EL ADLPGMKKED+ +D+D ESGVLTV+GERK
Sbjct: 20 INDVFGSIEREMLAPWGLASRFPTTRDMFPTFPTSLFGDGSR--------SLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 108
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 4.160e-19 Identity = 56/127 (44.09%), Postives = 70/127 (55.12%), Query Frame = 2
Query: 17 DVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVST-------------------------------VPSMG----REGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
DVF S+ER+++AP G++SRFPT S V T VPS+ R+G L MNLDFHET G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK
Sbjct: 7 DVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 133
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 5.070e-19 Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query: 44 LMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
++AP G +SRFPT + + S S+ R+G L MNLDFHET G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK
Sbjct: 1 MLAPWGFASRFPT-----ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 78
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.100e-17 Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 2
Query: 44 LMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
++AP G++ RFPT + + S S+ R+G L MNLDFHET G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK
Sbjct: 1 MLAPWGLAFRFPT-----ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 78
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A6J0ZW59_9ROSI (17.3 kDa class I heat shock protein-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J0ZW59_9ROSI) HSP 1 Score: 55.1 bits (131), Expect = 2.740e-7 Identity = 29/88 (32.95%), Postives = 51/88 (57.95%), Query Frame = 2
Query: 23 FDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
F + + P + R P DFP SS ++ + + + ++D+ ET++ + ADLPG+KKE++KV+I+ + VL ++GERK
Sbjct: 8 FGNRRSSIFDPCSVDLRDPCKDFPFSSFSSLAAIHNPETSAFVNTHIDWKETSEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERK 94
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A1H0V210_9RALS (Heat shock protein Hsp20 n=2 Tax=Burkholderiaceae TaxID=119060 RepID=A0A1H0V210_9RALS) HSP 1 Score: 54.3 bits (129), Expect = 7.410e-7 Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 2
Query: 2 RRAMHDVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
RR + +F + +RD F FP + GL S +P MG G +DF ET+KGYE++ +LPG+ ++ I+V + + G L V GE++
Sbjct: 33 RREVDRLFQNFDRD----------FKLTSFPRLTQGLASAMPDMGSMFSAGPAVDFVETDKGYEITMELPGLDEKSIEVKLSN--GGLVVKGEKR 115
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A7J9GB72_9ROSI (SHSP domain-containing protein n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GB72_9ROSI) HSP 1 Score: 55.1 bits (131), Expect = 7.830e-7 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query: 20 VFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMN--LDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGER 283
VFD DL P F DFP V+++PS+ RE +N +D+ ET + + ADLPGMKKE++KV+I+ + VL ++GER
Sbjct: 16 VFDPFSLDLWDP------FKEFDFP-----TVTSLPSLSRENSAFVNTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDR-VLQISGER 93
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A2P6QIG0_ROSCH (Putative small heat shock protein HSP20 n=6 Tax=cellular organisms TaxID=131567 RepID=A0A2P6QIG0_ROSCH) HSP 1 Score: 53.5 bits (127), Expect = 9.790e-7 Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 2
Query: 17 DVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 286
D++D RD PS S FP +FPG + ++T +D+ ET + + ADLPG+KKE++KV+I+ + VL ++GERK
Sbjct: 16 DLWDPF-RDFQFPSSSLSTFP--EFPGENSAFINT------------RIDWKETPEAHVFKADLPGLKKEEVKVEIEDDR-VLQISGERK 89
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Match: A0A212UEH6_9BACT (HSP20 family protein n=1 Tax=Hymenobacter gelipurpurascens TaxID=89968 RepID=A0A212UEH6_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 1.000e-6 Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 2
Query: 119 TVPSMGREGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGER 283
++ S GR ++D +ET K YE+ A LPGMK+EDIKVD G LTVTGER
Sbjct: 29 SIASRGRVSTFSPHIDAYETEKAYEIEASLPGMKREDIKVDF--HQGRLTVTGER 81 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig144.3143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig144.3143.1 >prot_F-serratus_M_contig144.3143.1 ID=prot_F-serratus_M_contig144.3143.1|Name=mRNA_F-serratus_M_contig144.3143.1|organism=Fucus serratus male|type=polypeptide|length=92bp MHDVFDSMERDLMAPSGMSSRFPTIDFPGSSIGLVSTVPSMGREGGLGMNback to top mRNA from alignment at F-serratus_M_contig144:708749..709034+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig144.3143.1 ID=mRNA_F-serratus_M_contig144.3143.1|Name=mRNA_F-serratus_M_contig144.3143.1|organism=Fucus serratus male|type=mRNA|length=286bp|location=Sequence derived from alignment at F-serratus_M_contig144:708749..709034+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig144:708749..709034+ >mRNA_F-serratus_M_contig144.3143.1 ID=mRNA_F-serratus_M_contig144.3143.1|Name=mRNA_F-serratus_M_contig144.3143.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig144:708749..709034+ (Fucus serratus male)back to top |