mRNA_F-serratus_M_contig144.3140.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig144.3140.1
Unique NamemRNA_F-serratus_M_contig144.3140.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig144.3140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig144contigF-serratus_M_contig144:532315..535370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size322
Cds size321
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig144.3140.1prot_F-serratus_M_contig144.3140.1Fucus serratus malepolypeptideF-serratus_M_contig144 532315..535370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.9298694-CDS-F-serratus_M_contig144:532314..5323901622929424.9298694-CDS-F-serratus_M_contig144:532314..532390Fucus serratus maleCDSF-serratus_M_contig144 532315..532390 -
1690962845.7530298-CDS-F-serratus_M_contig144:532314..5323901690962845.7530298-CDS-F-serratus_M_contig144:532314..532390Fucus serratus maleCDSF-serratus_M_contig144 532315..532390 -
1622929424.945239-CDS-F-serratus_M_contig144:532725..5327971622929424.945239-CDS-F-serratus_M_contig144:532725..532797Fucus serratus maleCDSF-serratus_M_contig144 532726..532797 -
1690962845.762365-CDS-F-serratus_M_contig144:532725..5327971690962845.762365-CDS-F-serratus_M_contig144:532725..532797Fucus serratus maleCDSF-serratus_M_contig144 532726..532797 -
1622929424.9639187-CDS-F-serratus_M_contig144:533145..5332171622929424.9639187-CDS-F-serratus_M_contig144:533145..533217Fucus serratus maleCDSF-serratus_M_contig144 533146..533217 -
1690962845.7707388-CDS-F-serratus_M_contig144:533145..5332171690962845.7707388-CDS-F-serratus_M_contig144:533145..533217Fucus serratus maleCDSF-serratus_M_contig144 533146..533217 -
1622929424.978014-CDS-F-serratus_M_contig144:534677..5347491622929424.978014-CDS-F-serratus_M_contig144:534677..534749Fucus serratus maleCDSF-serratus_M_contig144 534678..534749 -
1690962845.7802334-CDS-F-serratus_M_contig144:534677..5347491690962845.7802334-CDS-F-serratus_M_contig144:534677..534749Fucus serratus maleCDSF-serratus_M_contig144 534678..534749 -
1622929424.995783-CDS-F-serratus_M_contig144:535341..5353701622929424.995783-CDS-F-serratus_M_contig144:535341..535370Fucus serratus maleCDSF-serratus_M_contig144 535342..535370 -
1690962845.790941-CDS-F-serratus_M_contig144:535341..5353701690962845.790941-CDS-F-serratus_M_contig144:535341..535370Fucus serratus maleCDSF-serratus_M_contig144 535342..535370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig144.3140.1

>prot_F-serratus_M_contig144.3140.1 ID=prot_F-serratus_M_contig144.3140.1|Name=mRNA_F-serratus_M_contig144.3140.1|organism=Fucus serratus male|type=polypeptide|length=107bp
FADLTALELLSLRRNALTSLPDTLLTGLHNLTYVDFQHNNLEELPERAFT
DLVNLQKLYLNENSLTSLPDDCFSGAYGLQHLYLDWNRLQRLPVGIFGGM
SELKTL*
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mRNA from alignment at F-serratus_M_contig144:532315..535370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig144.3140.1 ID=mRNA_F-serratus_M_contig144.3140.1|Name=mRNA_F-serratus_M_contig144.3140.1|organism=Fucus serratus male|type=mRNA|length=3056bp|location=Sequence derived from alignment at F-serratus_M_contig144:532315..535370- (Fucus serratus male)
TTCGCGGACCTCACGGCCCTGGAACTATTGTGAGTAAATGCTAGAAACAA
GAAAGCGTCGTGAGAATGACTCCGGCAAGGTTCGCGGCACGGTACGCACA
CCTGCTCTCCCGCCCATGCGCGCTTATTTTTCCGGAGGCCATCTTGTTTT
TCCCCTGCCACCTGGACGGATCCGTGTCGCATGTGGTGCATTGTGCTTGT
TGTCTCTCGGCAAAAAATATAAATTTGTTTCCTTCGGAGCGTGTTTGTTT
TTCCCTGCTATTCTACTCAACGACTGGGTGAGGGCAAAATATGTACCAAC
CCCTGCATTGTAGTTACACATTGAATCCTGTCTCACGGTCTCCACGTTTT
GACGTCTTGTGACTGTTGTAGCTTCTCTCTGGCTTCCTATACAATAGTGA
TACTGACTTGATGGAGGTCAACCGATGCCCCGCAGTCGTTGCAAACAATC
GACGAACCTTGAGTCACAAGCAGCAGAATCGAGCCCTCTGCTGATTCTGA
CAAAGTGTACTAACCCTCGCATGCCCAGCATCCTTCACTTTGAAGTTTTC
CACACCCTTGGAAAAATGAAGATATCCCCACCTCGCCCCTCCCCCCCCCC
CTTGCCCGTTTACGTCGCCAGGTCTCTTCGCCGCAATGCTCTTACGTCAC
TACCAGACACCCTGCTAACGGGTCTGCACAACCTCACCTACGTGTGAGTC
GATCGAAACTTCTTTTATCATTTCACTTGTTGTTTAATCTTTATTAACAT
ACTTAGGTCGAGAAAAAGTCAGAATGGTGCTGACCAATCGGCCCGAAACC
GGCAGTCTCGTCTAAGCAGAGGTTCGAGGAGGCTTGAAGAGTCGTTCCGC
GAAAGGGGGGTAAGAGGGATGTGACAAATCCGCTCCCCGGCGAAAGTGTA
TCAAACCGCCCCATTCCGAGGATGAGCGCATCACCATTCCCCTAAACGAT
ACGCCAACTTATCTTGCTCAGCGTTCGTCCTCCTACGGCATGATGAAAAA
TATCCCCGTTAGTAACGCTATGAAACAAATCATGATATTAGGGTAGGGGG
GGGGGGGATTTACAACATCCCCACACACACACCTCTCTTGTTGAATGACA
CGCCTGGCGTATTGATCCCAACCTAGACAGGCGCCCCCATGTACCGACGC
CTTCCATCCACCTTCCATGCTCCCCTCTTCGTTGAAAAGTGACAGGGCAC
GCTCATGGATGCTCTCCATGAATATGCTCTTTTTGTGTCATTTGTTCTCC
ACTCGACGCTCCCCCCCCCCCCCCCCCCCCCCCTCCCAGGAGTTTCTTCA
ACAATCAACTCACTTCGATCACGAGTCTGAAAGGGCTTGAATCTCTTGAG
CACCTGTGAGTGCCCGCGGGCGCTTGCGTTGACATAACCCCCCCCCCCCT
CCCCCGAAGAGATAAGCGTGCCGCGCGTGCGCGTCGACCGCGCTTCTTCC
GCCGCTGGAGTTTTCGCCCCGCTCGATGAGACAAGACTAGATCAGACCTA
GAAAAGAGTCTCAACAACCCCGGATCGCACTTTTACCGATTGCCCACGGA
CGCGGCCGTCCACCGGGAAACGTCCGGAAGGCCTTCCTTTCCCTCCTCGC
TTAGGGACCCCTCTCCTTGCGGCCTGCCCGCCGCCGATCGCGTGATGATA
ATCGAGCGACTGAGCGGTTAGCTTGAACCTCCCACGACTATGACTAGAAA
TACAGAGATACTCAACTCTGGTGCTCACCTCTATAGATCAATTCCTTTTT
GTAGTAGTAGTCTGGGGGATCACGGAATCACCGATCAAAAGCTTTCGGTC
ATCAAATGTAGTGCATTGTATTTAGTAAGCTTCTTCTCAAAGACGGTAGG
AGGATGAGTCTGTTCGAACGTACTTCTTCAGTGCGCGTGCTCGTGCAGTC
TTTTCGCCGCCTCCTGTCTGCGGAGGCTTGATGCTTGGTTTCCTTCCGCT
TGGGATGGGTGATTTGTCTTATTTACTGGATCGCAAATCTTTGTTTCGCA
TACAGCCATGAATATTTACTTCTCAGAGACAATATTTTGTTCAGAAACTC
TTATTCCTAGAGCTGTAGGTGTCGGGATGGGCTCTGTTCAGCCATGCCCT
TGCCTAAATGGTTCGAACCCTCCCCCTGCTTGCCTGGCCGCCGCCGTCCA
CAGCGATTTCCAGCACAACAACTTGGAAGAACTGCCCGAACGAGCCTTCA
CCGACCTCGTGAATCTGCAAAAGCTGTGAGTTGCCAACGGAAGCATCCAA
TCACCTGCGCTTTCCTTGCCTTGACAACCAAGTTGCGCCTTCTCTCACTG
CCCCCCCCCCATATCTTCTGCCGTCGAACAACCCAAAAACGCCGGTGAAT
GCATGCGCGGGCTGGCCTGTTCTAGCTTCCCTTCCCTCGATAGCTCTCTT
CTTTGAAAACACTCGCTCTAAGCTCTTTGTATCGAGCGAACAAAGAAAAA
CCACGAAAAAAATCATGTAACTTTCCCCTCATAGCTAACAAGCCAAGTTC
TCCATCCCCCCCCCCAACTCTTGCTACACACGCCTCCTCGCCTTGTCGAC
GCCCGTCTCCCGCTCTCTTAAAGATATCTCAACGAAAACTCGCTGACTTC
CCTGCCGGATGACTGCTTTTCGGGCGCGTATGGCTTGCAACACTTGTAAG
GAGTGTTTTCGTCTTCTTTTCAGAGCCTTTGCTGCCCATTCGTTATATTG
GCTGCAGGCACATACATACAGTACATCAGTGATTTGTTCTGACGGGCGCA
TCTGTGGATGCTTCCGCTCGCAGCGGCTAGTGCACACCGGCTACCGGCCC
TTCATAGCTGACGCCCCGCCCAGGAGGCAGCTTGCTTGTTGGTAGAATGG
CAGGCAATAGCTGACTTCCACCATGTCCAAGAAAAAGTACAGGTGTTGTG
TATTTTGCGGCTTGAAGTGCAACGAATGAATCTTACGGTACGCCTTCCCA
ACACGCTTGGTTGCCGTGTCGTATTCTTAGGTATCTCGACTGGAACCGTC
TCCAGCGACTTCCCGTGGGGATCTTCGGCGGCATGTCCGAGCTCAAGACC
TTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig144:532315..535370-

>mRNA_F-serratus_M_contig144.3140.1 ID=mRNA_F-serratus_M_contig144.3140.1|Name=mRNA_F-serratus_M_contig144.3140.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig144:532315..535370- (Fucus serratus male)
TTCGCGGACCTCACGGCCCTGGAACTATTTTCGCGGACCTCACGGCCCTG
GAACTATTGTCTCTTCGCCGCAATGCTCTTACGTCACTACCAGACACCCT
GCTAACGGGTCTGCACAACCTCACCTACGTGTCTCTTCGCCGCAATGCTC
TTACGTCACTACCAGACACCCTGCTAACGGGTCTGCACAACCTCACCTAC
GTCGATTTCCAGCACAACAACTTGGAAGAACTGCCCGAACGAGCCTTCAC
CGACCTCGTGAATCTGCAAAAGCTCGATTTCCAGCACAACAACTTGGAAG
AACTGCCCGAACGAGCCTTCACCGACCTCGTGAATCTGCAAAAGCTATAT
CTCAACGAAAACTCGCTGACTTCCCTGCCGGATGACTGCTTTTCGGGCGC
GTATGGCTTGCAACACTTATATCTCAACGAAAACTCGCTGACTTCCCTGC
CGGATGACTGCTTTTCGGGCGCGTATGGCTTGCAACACTTGTATCTCGAC
TGGAACCGTCTCCAGCGACTTCCCGTGGGGATCTTCGGCGGCATGTCCGA
GCTCAAGACCTTGTGAGTATCTCGACTGGAACCGTCTCCAGCGACTTCCC
GTGGGGATCTTCGGCGGCATGTCCGAGCTCAAGACCTTGTGA
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