mRNA_F-serratus_M_contig1438.3134.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1438.3134.1
Unique NamemRNA_F-serratus_M_contig1438.3134.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1438.3134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1438contigF-serratus_M_contig1438:53122..53514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.211795-CDS-F-serratus_M_contig1438:53121..532011622929424.211795-CDS-F-serratus_M_contig1438:53121..53201Fucus serratus maleCDSF-serratus_M_contig1438 53122..53201 +
1690962845.4427717-CDS-F-serratus_M_contig1438:53121..532011690962845.4427717-CDS-F-serratus_M_contig1438:53121..53201Fucus serratus maleCDSF-serratus_M_contig1438 53122..53201 +
1622929424.2268581-CDS-F-serratus_M_contig1438:53347..535131622929424.2268581-CDS-F-serratus_M_contig1438:53347..53513Fucus serratus maleCDSF-serratus_M_contig1438 53348..53513 +
1690962845.451211-CDS-F-serratus_M_contig1438:53347..535131690962845.451211-CDS-F-serratus_M_contig1438:53347..53513Fucus serratus maleCDSF-serratus_M_contig1438 53348..53513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1438.3134.1prot_F-serratus_M_contig1438.3134.1Fucus serratus malepolypeptideF-serratus_M_contig1438 53122..53513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1438.3134.1

>prot_F-serratus_M_contig1438.3134.1 ID=prot_F-serratus_M_contig1438.3134.1|Name=mRNA_F-serratus_M_contig1438.3134.1|organism=Fucus serratus male|type=polypeptide|length=82bp
QQIEEGKAPFEPIYRKTQSHLESNWKMHDYNRNERETLSGVPNIPRPVVW
PPPGTTPGQEPGVAGLPTEPAPAQQDQGGMYN
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mRNA from alignment at F-serratus_M_contig1438:53122..53514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1438.3134.1 ID=mRNA_F-serratus_M_contig1438.3134.1|Name=mRNA_F-serratus_M_contig1438.3134.1|organism=Fucus serratus male|type=mRNA|length=393bp|location=Sequence derived from alignment at F-serratus_M_contig1438:53122..53514+ (Fucus serratus male)
CAGCAGATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAAGAC
GCAGTCGCATCTCGAGTCGAACTGGAAAATGTGAGTGACCTAAGCACTTT
CATTTGTTTTGTCGCGTCCTGCTGGTCAACCTTTTGTGTCGCGCGTCCGG
ACGAAGTACGTGTATTGTCAGCGGACACGTGTTTCACCTGTACTCCCTTT
CGGCGGCGCTGATATTTTTTTGCAAGGCACGACTACAACCGTAACGAGAG
GGAGACGCTGAGCGGAGTGCCGAACATACCTCGCCCGGTGGTGTGGCCGC
CTCCGGGTACCACCCCAGGACAAGAACCAGGGGTCGCGGGGTTGCCTACA
GAACCTGCCCCAGCCCAGCAAGACCAAGGCGGGATGTACAATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1438:53122..53514+

>mRNA_F-serratus_M_contig1438.3134.1 ID=mRNA_F-serratus_M_contig1438.3134.1|Name=mRNA_F-serratus_M_contig1438.3134.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig1438:53122..53514+ (Fucus serratus male)
CAGCAGATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAAGAC
GCAGTCGCATCTCGAGTCGAACTGGAAAATCAGCAGATAGAAGAGGGCAA
GGCGCCTTTCGAACCTATTTACAGGAAGACGCAGTCGCATCTCGAGTCGA
ACTGGAAAATGCACGACTACAACCGTAACGAGAGGGAGACGCTGAGCGGA
GTGCCGAACATACCTCGCCCGGTGGTGTGGCCGCCTCCGGGTACCACCCC
AGGACAAGAACCAGGGGTCGCGGGGTTGCCTACAGAACCTGCCCCAGCCC
AGCAAGACCAAGGCGGGATGTACAATGCACGACTACAACCGTAACGAGAG
GGAGACGCTGAGCGGAGTGCCGAACATACCTCGCCCGGTGGTGTGGCCGC
CTCCGGGTACCACCCCAGGACAAGAACCAGGGGTCGCGGGGTTGCCTACA
GAACCTGCCCCAGCCCAGCAAGACCAAGGCGGGATGTACAAT
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