mRNA_F-serratus_M_contig1437.3126.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1437.3126.1
Unique NamemRNA_F-serratus_M_contig1437.3126.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1437.3126.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.260e-6
Identity = 19/42 (45.24%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:  105 RIEKCRTDDCSELPSFGVAGSRKPEYCAKHARDGMITVKSRK 230
            R+ +C  ++C++ P++GVAGS+K E+C++HARDGM+ V +++
Sbjct:   60 RMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_F-serratus_M_contig1437.3126.1 vs. uniprot
Match: A0A6H5JHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHF4_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.690e-5
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 3 
Query:   99 RVRIEKCRTDDCSELPSFGVAGSRKPEYCAKHARDGMITVKSRK 230
            R    +C    C+ +P++G A S+KPEYCAKH   GM+ V +R+
Sbjct:   28 RTMRRECAQHQCTTMPTYGTAQSKKPEYCAKHKHPGMVDVLNRR 71
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BLAST of mRNA_F-serratus_M_contig1437.3126.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 9.820e-5
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  108 IEKCRTDDCSELPSFGVAGSRKPEYCAKHARDGMIT 215
            I +C  +DC + P++GV G+RK E+CA HA DGM++
Sbjct:   14 IRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMVS 49
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BLAST of mRNA_F-serratus_M_contig1437.3126.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 9.990e-5
Identity = 18/41 (43.90%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  108 IEKCRTDDCSELPSFGVAGSRKPEYCAKHARDGMITVKSRK 230
            + +C   +C++ P++GVAGS+K E+C++HARDGM+ V +++
Sbjct:    1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1437.3126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE7.260e-645.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHF4_9PHAE2.690e-543.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBM3_9PHAE9.820e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI9.990e-543.90EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1437contigF-serratus_M_contig1437:171403..171965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.6849222-UTR-F-serratus_M_contig1437:171402..1714101622929422.6849222-UTR-F-serratus_M_contig1437:171402..171410Fucus serratus maleUTRF-serratus_M_contig1437 171403..171410 +
1690962844.7990813-UTR-F-serratus_M_contig1437:171402..1714101690962844.7990813-UTR-F-serratus_M_contig1437:171402..171410Fucus serratus maleUTRF-serratus_M_contig1437 171403..171410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.708865-CDS-F-serratus_M_contig1437:171410..1719651622929422.708865-CDS-F-serratus_M_contig1437:171410..171965Fucus serratus maleCDSF-serratus_M_contig1437 171411..171965 +
1690962844.8065133-CDS-F-serratus_M_contig1437:171410..1719651690962844.8065133-CDS-F-serratus_M_contig1437:171410..171965Fucus serratus maleCDSF-serratus_M_contig1437 171411..171965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1437.3126.1prot_F-serratus_M_contig1437.3126.1Fucus serratus malepolypeptideF-serratus_M_contig1437 171411..171965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1437.3126.1

>prot_F-serratus_M_contig1437.3126.1 ID=prot_F-serratus_M_contig1437.3126.1|Name=mRNA_F-serratus_M_contig1437.3126.1|organism=Fucus serratus male|type=polypeptide|length=185bp
MQGVPSKPHKAMWAQGHIITTANAPRTEWSRVRIEKCRTDDCSELPSFGV
AGSRKPEYCAKHARDGMITVKSRKKCKTEYCGKYPSFGVVSTRSAQYCKQ
HAPDGMVDVKNRKCKTRGCNKQPSCGVAGTRTPEYCAIHAPDDMVNVVAR
KCRTDGCGKVPLLGMAGTRIPEYCKQHAPDGMVFV
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mRNA from alignment at F-serratus_M_contig1437:171403..171965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1437.3126.1 ID=mRNA_F-serratus_M_contig1437.3126.1|Name=mRNA_F-serratus_M_contig1437.3126.1|organism=Fucus serratus male|type=mRNA|length=563bp|location=Sequence derived from alignment at F-serratus_M_contig1437:171403..171965+ (Fucus serratus male)
GTACTCTTATGCAAGGTGTGCCAAGCAAACCTCACAAGGCAATGTGGGCA
CAAGGACACATCATTACTACAGCAAACGCGCCAAGGACGGAGTGGTCGAG
GGTACGAATAGAAAAGTGCAGAACCGACGACTGCAGCGAGCTTCCGTCGT
TTGGAGTGGCCGGCTCTAGAAAACCAGAGTACTGCGCAAAACACGCCCGG
GATGGGATGATCACCGTCAAGAGCAGAAAGAAGTGCAAAACCGAATACTG
CGGCAAGTACCCGTCATTTGGTGTGGTAAGTACGAGATCGGCACAGTACT
GCAAACAGCACGCCCCGGACGGGATGGTTGACGTAAAGAACAGAAAGTGC
AAAACCAGAGGCTGCAACAAGCAGCCGTCGTGTGGAGTGGCCGGTACCAG
AACACCAGAGTACTGCGCAATACACGCTCCGGATGATATGGTTAACGTCG
TCGCCAGAAAATGCAGAACCGACGGCTGTGGCAAGGTTCCGCTGTTGGGA
ATGGCCGGTACAAGAATACCTGAGTACTGCAAACAGCATGCCCCGGACGG
GATGGTATTCGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1437:171403..171965+

>mRNA_F-serratus_M_contig1437.3126.1 ID=mRNA_F-serratus_M_contig1437.3126.1|Name=mRNA_F-serratus_M_contig1437.3126.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig1437:171403..171965+ (Fucus serratus male)
ATGCAAGGTGTGCCAAGCAAACCTCACAAGGCAATGTGGGCACAAGGACA
CATCATTACTACAGCAAACGCGCCAAGGACGGAGTGGTCGAGGGTACGAA
TAGAAAAGTGCAGAACCGACGACTGCAGCGAGCTTCCGTCGTTTGGAGTG
GCCGGCTCTAGAAAACCAGAGTACTGCGCAAAACACGCCCGGGATGGGAT
GATCACCGTCAAGAGCAGAAAGAAGTGCAAAACCGAATACTGCGGCAAGT
ACCCGTCATTTGGTGTGGTAAGTACGAGATCGGCACAGTACTGCAAACAG
CACGCCCCGGACGGGATGGTTGACGTAAAGAACAGAAAGTGCAAAACCAG
AGGCTGCAACAAGCAGCCGTCGTGTGGAGTGGCCGGTACCAGAACACCAG
AGTACTGCGCAATACACGCTCCGGATGATATGGTTAACGTCGTCGCCAGA
AAATGCAGAACCGACGGCTGTGGCAAGGTTCCGCTGTTGGGAATGGCCGG
TACAAGAATACCTGAGTACTGCAAACAGCATGCCCCGGACGGGATGGTAT
TCGTCATGCAAGGTGTGCCAAGCAAACCTCACAAGGCAATGTGGGCACAA
GGACACATCATTACTACAGCAAACGCGCCAAGGACGGAGTGGTCGAGGGT
ACGAATAGAAAAGTGCAGAACCGACGACTGCAGCGAGCTTCCGTCGTTTG
GAGTGGCCGGCTCTAGAAAACCAGAGTACTGCGCAAAACACGCCCGGGAT
GGGATGATCACCGTCAAGAGCAGAAAGAAGTGCAAAACCGAATACTGCGG
CAAGTACCCGTCATTTGGTGTGGTAAGTACGAGATCGGCACAGTACTGCA
AACAGCACGCCCCGGACGGGATGGTTGACGTAAAGAACAGAAAGTGCAAA
ACCAGAGGCTGCAACAAGCAGCCGTCGTGTGGAGTGGCCGGTACCAGAAC
ACCAGAGTACTGCGCAATACACGCTCCGGATGATATGGTTAACGTCGTCG
CCAGAAAATGCAGAACCGACGGCTGTGGCAAGGTTCCGCTGTTGGGAATG
GCCGGTACAAGAATACCTGAGTACTGCAAACAGCATGCCCCGGACGGGAT
GGTATTCGTC
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