mRNA_F-serratus_M_contig1435.3116.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1435.3116.1
Unique NamemRNA_F-serratus_M_contig1435.3116.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: D8LNM0_ECTSI (Protein atp11, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNM0_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 4.130e-99
Identity = 145/184 (78.80%), Postives = 165/184 (89.67%), Query Frame = 3 
Query:  105 VSRARG-LSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWRESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAHHYVEAFNHRPGEFNLEKFLQETPRD 653
            VS+AR  LSFSFPGPRKL DITNLPLL KE  + I+ IWTAYHD+R DS+GTV+PG++L  LQA+A+KCPMF+LPVWR+ GHFMMLSQYQD CFLLT+LEDYKVNP GAQPYATISMY DLV SKGLGL+RAD+TPNLTKKEV+RL+RLLIRFYSPHAHH+VEAFN RP EF+L+K LQETPRD
Sbjct:   44 VSQARRELSFSFPGPRKLEDITNLPLLAKEEKESIADIWTAYHDEREDSLGTVIPGDSLDGLQAKAKKCPMFVLPVWRDGGHFMMLSQYQDKCFLLTYLEDYKVNPGGAQPYATISMYNDLVDSKGLGLIRADITPNLTKKEVDRLVRLLIRFYSPHAHHHVEAFNLRPQEFDLDKLLQETPRD 227
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A836CMH7_9STRA (ATP11 protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMH7_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.160e-54
Identity = 93/183 (50.82%), Postives = 128/183 (69.95%), Query Frame = 3 
Query:  111 RARGLSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWR--ESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFY--SPHAHHYVEAFNHRPGEFNLEKFLQETP 647
            + R LSFS+PGPRKL +ITNLPLLEKE    +S IW  +HD R D++G  + G  L +L  RA++ PMFI PV R  + G+FM+L Q+Q + FLLTFL+DY+ NP+GAQPY ++S++ DL +SKG+GL+RAD+T  L++ E  R+L L+ R+Y  S   +  V AFNH P EFN E ++   P
Sbjct:   47 QCRHLSFSYPGPRKLSEITNLPLLEKEEPAIVSDIWRQFHDARKDAIGATLSGAELQELLKRAKESPMFIFPVHRGADGGYFMLLCQFQGSHFLLTFLDDYRTNPSGAQPYMSVSLFSDLAESKGVGLVRADVTAQLSRAEGVRVLDLMQRYYIGSEELYGMVRAFNHAPAEFNFEVYMSTVP 229
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A7S2DR12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR12_9STRA)

HSP 1 Score: 158 bits (400), Expect = 5.830e-43
Identity = 80/180 (44.44%), Postives = 110/180 (61.11%), Query Frame = 3 
Query:  108 SRARGLSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWRESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAHHYVEAFNHRPGEFNLEKFLQETP 647
            S +R LSFSFPGPR+L D+  LPLL+ E+ +++  IW  YH K+   +  V         +A A+KCP+FI PV R+ GHF+MLSQ Q+   LLT+LEDYK +P  A PY TIS+++D    KG+ L R D+   L+  E +RLL L+  +Y       V AFN   GEF+ E  L++ P
Sbjct:   16 SVSRPLSFSFPGPRRLADVVKLPLLQDESRERVEEIWRTYHSKQDTCIADVWEAGEYKSFRALAKKCPLFIFPVRRDKGHFVMLSQVQEQHVLLTYLEDYKKDPVAAVPYLTISLFDDFAADKGIVLARGDICNTLSLDESQRLLGLMKTYYGGPRQEDVRAFN--KGEFDFEAHLRDCP 193
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BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: K3X797_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X797_GLOUD)

HSP 1 Score: 154 bits (388), Expect = 9.690e-41
Identity = 79/172 (45.93%), Postives = 108/172 (62.79%), Query Frame = 3 
Query:  129 FSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWRESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHA-HHYVEAFNHRPGEFNLEKFLQE 641
            FS+P PR L  I  L LLE E+ +QI +IW  YH ++ DS+ T +  E   +L  RA   P F+ PV+R+ G F M+ Q+QDTCFLLT+LE +K NP  A P  T+S+Y+DLV++K +GLLRAD+   L KKE + LL  L+  YS      +V  FNH P +F+ E +  E
Sbjct:   44 FSYPAPRSLQQIVKLELLENESQEQIRAIWENYHREKDDSLATTLASEQYANLVQRATASPFFLFPVYRKEGFFNMICQFQDTCFLLTYLEAFKENPGLAPPCLTVSLYDDLVENKQIGLLRADVINMLDKKESQVLLDQLVASYSDEKLFAWVHRFNHEPEQFDFEAYRLE 215
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A1W0ABM0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABM0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.040e-40
Identity = 78/185 (42.16%), Postives = 113/185 (61.08%), Query Frame = 3 
Query:  108 SRARGLSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWR------ESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAHH-YVEAFNHRPGEFNLEKFLQE 641
            S ++G  FSFP PR L  I  L  L ++  ++I+ IWT YH  + DSV +++P      L +RA++CP F++PV+R      E G F MLSQ+QD CFL+T L+ Y+ NP  A P  TIS+++DL+ +K L L+R D+   L K E + L   L++ Y    H   V AFN RP EFN +++L+E
Sbjct:   13 STSKGGGFSFPSPRSLQSIVKLDELSQQNPEEITQIWTDYHADQTDSVASIIPKANFETLISRAKECPFFVMPVYRVNQETKEEGFFTMLSQFQDKCFLITTLDAYRENPAQAPPVLTISLFDDLLTTKELALIRGDVANLLDKPEAQVLFHALLKRYIDDKHFDMVHAFNKRPNEFNFDEYLKE 197
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BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A8K1CNF2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNF2_PYTOL)

HSP 1 Score: 154 bits (388), Expect = 1.220e-40
Identity = 86/207 (41.55%), Postives = 120/207 (57.97%), Query Frame = 3 
Query:   48 IAARLHPPSTTLKALVLP-TVSRARGLS----------FSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWRESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHA-HHYVEAFNHRPGEFNLEKF 632
            I A + P + +L+  + P  + R+R LS          FSFP P+ L  I  L LL  E   QI  IW  YH ++ D++  V+ G     L  RAR  P FI PV+R+ G F ML Q+QD CFL+T+LE +K NP  A P  T+S+++DL+  K +GLLRAD+   L K E E+LL  L+R YS    + +V+ FN+RP EF+ + F
Sbjct:   24 IRASMSPLAASLRRALAPRALLRSRWLSTEGKGPSGGGFSFPAPQTLQQIVKLDLLVNEEPTQIRRIWEDYHSEKDDAIARVLDGTEYSTLMERARSAPYFIFPVYRQGGFFNMLCQFQDKCFLVTYLEAFKENPALAPPCVTVSLFDDLLAEKDVGLLRADVVNMLDKAETEKLLNQLLRSYSNEKLYDWVDKFNNRPNEFDFDAF 230
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A078B7S6_STYLE (Atp11 protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B7S6_STYLE)

HSP 1 Score: 152 bits (384), Expect = 2.650e-40
Identity = 72/183 (39.34%), Postives = 114/183 (62.30%), Query Frame = 3 
Query:  117 RGLSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWRESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAH-HYVEAFNHRPGEFNLEKFLQETPRD*ER 662
            RG SF++P PRKL +I  + L EKE  + IS IW  YH+ +A ++  V+P    + L +  +  PMFI PV +++G+FM+LSQ Q   F+ T+LED+K NP  A PY  ++ +++LV++KG+ L+R D+   L K E + +L  L+  Y   +    ++ FNH+P +FN E + QE+ +D  R
Sbjct:   10 RGFSFTYPCPRKLREIVKISLFEKETPEVISEIWDDYHNTKAHAISKVIPQSLYLRLLSNGQTSPMFIFPVPKDAGYFMLLSQNQQKSFIFTYLEDFKKNPLTANPYLVLTCFDELVRTKGVALIRGDVIGQLNKNEAKTVLEKLLNSYLIDSQFETIKQFNHQPQQFNYENYTQESLQDFRR 192
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A024TLC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLC0_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.950e-40
Identity = 83/187 (44.39%), Postives = 108/187 (57.75%), Query Frame = 3 
Query:  102 TVSRARGLSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWR------ESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLR-LLIRFYSPHAHHYVEAFNHRPGEFNLEKFLQE 641
            ++S + G  F FP PR L  +  L  LEKE  D I  IW  YHD + D++GT +    L  L AR +KC  F+ PV+R      E G F MLSQ+QD CFLLT L+ Y+ NP+ A P  T+S+Y+DLV SK L L+R D+   L K E   LL  LL R+        VEAFN +P +FN + +L E
Sbjct:   15 SLSTSSGGGFHFPSPRSLQSLVKLDDLEKETPDAIRRIWGEYHDAKTDALGTSLTATQLDTLTARGKKCAFFVFPVYRTNAETKEEGFFTMLSQFQDKCFLLTTLDAYRENPSQAPPCLTVSIYDDLVSSKELALVRGDVANVLDKPEASELLTALLARYVDDDLFKTVEAFNLKPHDFNFDAYLAE 201
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A1V9YPU7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPU7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.890e-40
Identity = 85/194 (43.81%), Postives = 112/194 (57.73%), Query Frame = 3 
Query:   81 LKALVLPTVSRARGLSFSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWR------ESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAHH-YVEAFNHRPGEFNLEKFLQE 641
            L+AL     S ++G  FSFP PR L  I  L  L +EA + I  IWT +H  + DSV   +  +    L  RA+ CP F+LPV+R      E G F MLSQ+QD CFL+T L+ Y+ NP  A P  T+S+++DLV SK L LLR D+   L K+E + L + L + Y   AH   V AFN RP EFN + +L E
Sbjct:    5 LRALGRRAFSTSKGGGFSFPSPRSLQSIVKLETLAQEAPEDIRRIWTEFHADKTDSVAATLAKDEWEVLMERAKDCPFFVLPVYRRNQETNEVGFFTMLSQFQDKCFLVTTLDAYRENPAQAPPCLTVSIFDDLVASKDLALLRGDVANLLDKQEADVLFQALTKRYIDDAHFDMVHAFNKRPQEFNFDAYLAE 198
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Match: A0A6G0WAK2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAK2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 8.740e-40
Identity = 80/178 (44.94%), Postives = 108/178 (60.67%), Query Frame = 3 
Query:  129 FSFPGPRKLGDITNLPLLEKEATDQISSIWTAYHDKRADSVGTVVPGEALIDLQARARKCPMFILPVWR------ESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYEDLVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAHHY-VEAFNHRPGEFNLEKFLQE 641
            F FP PR L  +  L  LEKEA D I  IW  YHD + D++G V+       L  RA+KC  F+ PV+R      E G+F +LSQ+QD CFLLT L+ Y+ NP  A P  T+S+++DLV SK L L+R D+   L K E  +LL  LI+ Y   AH+  VE+FN +P EF+ + +L+E
Sbjct:   16 FHFPSPRSLQSLVKLDELEKEAPDAIRRIWNDYHDDKTDAMGRVLTQNEFRTLVDRAKKCAFFVFPVYRVNKDTNEEGYFTVLSQFQDKCFLLTTLDAYRENPAQAPPCLTVSIFDDLVSSKELALIRGDVANLLDKDEASKLLDSLIQRYVNDAHYSTVESFNLKPQEFSFDAYLEE 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM0_ECTSI4.130e-9978.80Protein atp11, mitochondrial n=2 Tax=Ectocarpus Ta... [more]
A0A836CMH7_9STRA1.160e-5450.82ATP11 protein-domain-containing protein (Fragment)... [more]
A0A7S2DR12_9STRA5.830e-4344.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3X797_GLOUD9.690e-4145.93Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1W0ABM0_9STRA1.040e-4042.16Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8K1CNF2_PYTOL1.220e-4041.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A078B7S6_STYLE2.650e-4039.34Atp11 protein n=1 Tax=Stylonychia lemnae TaxID=594... [more]
A0A024TLC0_9STRA2.950e-4044.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YPU7_9STRA3.890e-4043.81Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WAK2_9STRA8.740e-4044.94Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1435contigF-serratus_M_contig1435:167362..172069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue4.8e-20
Seed eggNOG ortholog65071.PYU1_T013096
Preferred nameATPAF1
KEGG rclassRC00003,RC00011,RC00055,RC00060,RC00092,RC00181,RC00496,RC00523,RC00948
KEGG koko:K01874,ko:K07555,ko:K11423,ko:K21888
KEGG TC1.A.12.2.1
KEGG ReactionR01108,R03522,R03659,R03875,R03938,R04773,R04866,R04867
KEGG Pathwayko00053,ko00310,ko00450,ko00480,ko00970,ko01100,map00053,map00310,map00450,map00480,map00970,map01100
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031974,GO:0033615,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051082,GO:0065003,GO:0070013,GO:0070071,GO:0071840
EggNOG free text desc.ATP11 protein
EggNOG OGs1MGS0@121069,KOG3281@1,KOG3281@2759
Ec32 ortholog descriptionProtein atp11, mitochondrial precursor
Ec32 orthologEc-08_006630.1
EC1.8.5.1,2.1.1.43,2.5.1.18,6.1.1.10
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02000,ko03016,ko03029,ko03036
Exons5
Model size1267
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.1953044-UTR-F-serratus_M_contig1435:167361..1679721622929422.1953044-UTR-F-serratus_M_contig1435:167361..167972Fucus serratus maleUTRF-serratus_M_contig1435 167362..167972 -
1690962844.5709062-UTR-F-serratus_M_contig1435:167361..1679721690962844.5709062-UTR-F-serratus_M_contig1435:167361..167972Fucus serratus maleUTRF-serratus_M_contig1435 167362..167972 -
1622929422.2601845-UTR-F-serratus_M_contig1435:169310..1693141622929422.2601845-UTR-F-serratus_M_contig1435:169310..169314Fucus serratus maleUTRF-serratus_M_contig1435 169311..169314 -
1690962844.6111808-UTR-F-serratus_M_contig1435:169310..1693141690962844.6111808-UTR-F-serratus_M_contig1435:169310..169314Fucus serratus maleUTRF-serratus_M_contig1435 169311..169314 -
1622929422.275439-UTR-F-serratus_M_contig1435:169718..1698371622929422.275439-UTR-F-serratus_M_contig1435:169718..169837Fucus serratus maleUTRF-serratus_M_contig1435 169719..169837 -
1690962844.6238098-UTR-F-serratus_M_contig1435:169718..1698371690962844.6238098-UTR-F-serratus_M_contig1435:169718..169837Fucus serratus maleUTRF-serratus_M_contig1435 169719..169837 -
1622929422.291818-UTR-F-serratus_M_contig1435:171881..1720691622929422.291818-UTR-F-serratus_M_contig1435:171881..172069Fucus serratus maleUTRF-serratus_M_contig1435 171882..172069 -
1690962844.6343424-UTR-F-serratus_M_contig1435:171881..1720691690962844.6343424-UTR-F-serratus_M_contig1435:171881..172069Fucus serratus maleUTRF-serratus_M_contig1435 171882..172069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.2182474-CDS-F-serratus_M_contig1435:167972..1681041622929422.2182474-CDS-F-serratus_M_contig1435:167972..168104Fucus serratus maleCDSF-serratus_M_contig1435 167973..168104 -
1690962844.5814924-CDS-F-serratus_M_contig1435:167972..1681041690962844.5814924-CDS-F-serratus_M_contig1435:167972..168104Fucus serratus maleCDSF-serratus_M_contig1435 167973..168104 -
1622929422.2332504-CDS-F-serratus_M_contig1435:168600..1687231622929422.2332504-CDS-F-serratus_M_contig1435:168600..168723Fucus serratus maleCDSF-serratus_M_contig1435 168601..168723 -
1690962844.5917764-CDS-F-serratus_M_contig1435:168600..1687231690962844.5917764-CDS-F-serratus_M_contig1435:168600..168723Fucus serratus maleCDSF-serratus_M_contig1435 168601..168723 -
1622929422.246956-CDS-F-serratus_M_contig1435:169220..1693101622929422.246956-CDS-F-serratus_M_contig1435:169220..169310Fucus serratus maleCDSF-serratus_M_contig1435 169221..169310 -
1690962844.6037986-CDS-F-serratus_M_contig1435:169220..1693101690962844.6037986-CDS-F-serratus_M_contig1435:169220..169310Fucus serratus maleCDSF-serratus_M_contig1435 169221..169310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1435.3116.1prot_F-serratus_M_contig1435.3116.1Fucus serratus malepolypeptideF-serratus_M_contig1435 167973..169310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1435.3116.1

>prot_F-serratus_M_contig1435.3116.1 ID=prot_F-serratus_M_contig1435.3116.1|Name=mRNA_F-serratus_M_contig1435.3116.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MFILPVWRESGHFMMLSQYQDTCFLLTFLEDYKVNPTGAQPYATISMYED
LVKSKGLGLLRADLTPNLTKKEVERLLRLLIRFYSPHAHHYVEAFNHRPG
EFNLEKFLQETPRD*
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mRNA from alignment at F-serratus_M_contig1435:167362..172069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1435.3116.1 ID=mRNA_F-serratus_M_contig1435.3116.1|Name=mRNA_F-serratus_M_contig1435.3116.1|organism=Fucus serratus male|type=mRNA|length=4708bp|location=Sequence derived from alignment at F-serratus_M_contig1435:167362..172069- (Fucus serratus male)
GGGCCAAGAGCACCAGTCTGCGGTTTACTCAAAGAGCAGCAACTGGAATC
GCTGCGCGCCTTCACCCTCCATCCACAACGCTGAAAGCTCTGGTGCTACC
CACGGTATCAAGGGCGAGAGGACTTAGCTTCTCGTTCCCCGGACCTCGTA
AGCTCGGAGATATCACCAACCTGCCTCTTCTGGAGAAGGTTTGGACTTCA
TGTCGTTTACTCTGTCTGTAGATCCCGTATATTCATTCGTCGTAATTTGT
TTTGAAGATCTACACAGTTAATTTGTAAGGTCAACACTTCAGCTAAGTAG
AAGTCAATAACCGGGTAGTCCAGCTCATGGTCAAGGTCAATTGTACAAGG
AGTATTTCCCTGTCACCGTTCGCGCCTGAGAAATGGTCTCGCGAAATGGG
TCGGACCGTCCCATCCCGCGTCAGCCCGCTAATTCTTCACAGCTGGATCT
GGTGCTTACTCACGGGATCCCTCCTGCTTTCCGCGACGGCGTATATGGTC
TCAATCACCACCGGGTCAGTCCCGAGTTTATCGGGTTACGCATTTGCGTA
CCGACGGCGTTTACGACCGAGACTCCGCCGGCACAGGGATAGTAGTCATT
AAGATAGTTTAAGTAACGGGTTCCGCCTTTTCAGGTATCACTTTGGACCA
TCTTTTGTGTGCCTCTTTTTTTCCACACCCAGTATTATAGCACTATTAAT
AGACGCGGACAGCGGAACCGACTGCTGTATCATTATGATCCTGCGCTGAT
GCACAGTAATTGAGCTTCTCCACACGCGCGATGAAAGAGATAAGGAGCGG
GCAACTGTACACCAGGTACCTGTGCACTAAAGGTACTATTGTAGCTACTA
TTATTAGACCTAAAGTGTACTCCAACTCTAAGAAGGGAAAAGCTATTAAC
TGTACAGTGGGGGTCCCGGTTTAGTGCGGTACCGTGACAAATTGAAATAA
CCGCACTAAACCGGGAGATTCCGGCCCTGTAAACAGGGCACTGCACTATA
CAGGGATCTTGAATTGCACGCATCTCAGCGGTAGGGAGGTAGGGCACACC
ACACAGACAAACAGCTCACAGGATGCCCCTTCAGAGAGGTGGGACAAGGT
ACCGACGAGCAAAGCCGAAAGGTATGCTTGTTTTTGACAACTTACGGTCG
CCTGCCGCACAGGGCATCTTGGTCCATGCCTACTGGTGGGGCTGTAGGGT
ACGTATGAACCCTGTGTGTGAGGGAGGAAGGAGACTGTTGTTGTTGGTCC
TGGCTTAGTGCGGTTCGACCGCACTAAACAGGGTCTTTTTGGTCCCTATA
TAGTGCGGTGACCGCACTAAATAGGGACCGAAGTCGTGACAAGAAAATTG
GACCGCACTAAACCGGGCACCCCACTGTAATAGAAGTGCCGAATCCACCG
CATCCGTAGTACTAGATTTCCCCTCCATTCCGACGTGTTGGACAGTCGAA
CCGGCTGATGTATAAATAGAATCGCGCCCTAACGTATTTGATCTTCACCC
GCGATAGACGGGATGAGAAGCGGGCAAATGTATTGCCCGGAGGTAGATAC
TAGAGCTAGGTTGTATTCCAACTCGAGGAAAGGGAATACTAAATAAACGC
TGTAAAGACGACGAATCCACGGCATTTACTAAATAGGTCTTCGCTCCAGT
CAGTAGTTCGTCGTGTTGGTTGTCAAAAGTATTCGTGTGATACTACTAGA
CTATAATATTGAATATTGTCATGGGTTCTGATTTGCCGATAGCGGTACGA
GTACGGCCATTGATCATCTTTACTTCTACTGTTGCGGGTGAAGCTATCAA
TAGGTGAAGCTACCTCTAGTTATTCCTAGTTATTCCTTCATTCCTTCACC
GGAACGGGTAGCGGAGTTGGTTGGCAAAGGCCCTGCGGTACGATCGATAT
TGATTTTGATATTGTACCTGAGGCGCATGGATACGAGCAAATCCTATCCT
TGCACCTCGCTCGTGCGTGTTTGCCACCAGAAGAGAAGGGTTCGACTGGA
TCAAGTACATCTGAAGGAATGCACGAGTCACGGCAATTGTGATGGTGTTA
ATGATAGAAAGGATCCCACGTCATGTCGCTGACGGACGAGTGTAACATGC
AGTAGGCACACGGTAGGAGAATGAAAAGCCTGGTGACCTCCCTCTAACTG
GGGTAAGTTTTCTCTTTACACAAGGAAACCCACGGTGCCCATCCGATCAT
TTCGCCCGCGCAATTCGTCGTTGCACGCGCAGGAAGCGACGGATCAAATA
TCCTCCATCTGGACCGCGTACCATGATAAGCGAGCGGACTCCGTGGGCAC
CGTCGTGCCGGGAGAGGCTTTAATTGATCTGCAAGCCAGGGCCAGGAAAT
GGTGAGCGAGCAGCCAGATTCTCGTGGCACTTTAATAAGTGTTCGCTGTG
TAACGAAGCCCGTTCCTACTTTTTTACGCCTTGCAAGCCTGCAAGCAATA
CCTTTCAAAAGCAAAGTGAAATAAACTTGCACACCGTAACTCCTTCCTGA
GCAGTGAAATGTGTTAAATGTGTTACAATGTTTTCCAGAGAAGGGATATT
GATACCGAAGTCAGTTTCCAGGTCAACGTCACGCCAGCCTGCTACTAGTA
CTCTTAAAACAGTGGCATTAATAGCATAATAAATACTAGTACGACTTTTT
CGCTGTGGAGAACATGTTACAATACAGCGTACGCTGATCGTCGGTTCCGG
TGTCGTTTCCTCCGCCCCCCTCTGTCGGACCGCCCGAATTCACGTTACCC
CGTAGCCCGATGTTTATCCTGCCTGTGTGGCGAGAAAGCGGCCACTTCAT
GATGCTTTCTCAGTACCAAGACACGTGCTTCCTTCTTACCTTTCTCGAGG
TAACGTGTCGTATCGTAACCAAAAATATGTTACTGTGTCTGTCTGTATGT
TTGTTCTGTTGCACCTCACTCACCCTTACTGACGATGGTTACCAATCCTA
GTCCCACTTACTGCAACGTTGTCATCCTGCCTGTAGTCACTAAAAATCTC
CCCGGTTGTTGCCTTTGTTTTTGTTTTTTTTCGCGACCCACGCTCAACAC
TCTCAAACACCTCGCCATCCGATGATGATCGTTGATCATTGCTTACTCGC
GTTCTCACGCTTCCCACGGCGTGCTCCAGTACGATGCACGTACGAGTATT
GTAGGAATTCTTCGTGCCAGAACGAAACGCCACATATTGTACAAGTTTAT
AACTGTGTGATGCGTAGGAAAGTGGAGAATTGCTATGAAATATCTACAGC
TCTAAAGTGGATAAAAGGTACTGGTAGCAAACATACATTGCCCACTTGAC
ACCGTCACCCCACGAGGTCCTATGCACCAACTGACCAACCGAGCAGGACT
ACAAGGTCAATCCGACTGGAGCTCAGCCCTACGCTACGATATCTATGTAC
GAAGACCTGGTGAAGAGCAAAGGGCTGGGGCTCTTACGAGCCGACCTCAC
GCCAAACCTCACCAAAAAGGTAGCTTGACAAAGTTTGCGGCGTGTGCTCC
GCCAGGACGCTTGACGCTGCCCTTACAAGCAAGTTGAAATGTGATGCGTG
ATACCATAGCTGTTTTGTCTAACGTAGGTATGATAGGTCGCGTACGGACT
TTTCATTCACAGCGCCCGAATGTCATCTTGGCTCGAAAGGAAGCGTCGAC
TTGTCGTGTTGATGTCAGAAAGTGCGTTGTTTCCTGTGTTACACGTATGG
TTTTGTTGGCCCCCGAAAACGCGGCTGGCCCATAGCTTTGATATTTTATA
CCAATAGCACGTTCGAAAATGAAGATATGCAGCTGCCATCTTGTGTATTA
TTGATGTATTACTATAATAATAGCACATTGCTGCGCTGCTTGGTGGGGTT
TATTTCGCAAAAAGGGTCAAATGCTCCCGTGTAGTCTAGCACGTGAACGA
GGACTGAGCACGAATCACGCGCATTTCACGGAATGTTTGATGTCTTATCT
TATTCTCTTGCTCAGGAAGTTGAGAGGCTGCTGAGGCTCCTTATCCGTTT
TTACTCCCCACACGCTCACCACTACGTTGAGGCCTTCAACCACAGGCCGG
GAGAGTTCAACCTAGAAAAATTTCTTCAGGAGACGCCAAGAGATTGAGAA
CGCACGGTATTGATAGTGTATTCTAATAAGTGAGATAAATGTTTGCGGTG
GTTTAATGCCATTCAAAGCAGTTCCCTTTAGGCGTGTCGTCGTGTCGTCG
TGTCGTCGCCGTCGGTAATGGTGTGAATGGTGTGGTTGCGAAATACCGCG
TTGAAACGTTTTGGGGAGTACATTTCTTTGTAAGGGTCACGCCGGGAAAA
GCAGTACATAACGAGCGTACGGGCGTGCGAACGCGAGTAGGAAGCAAATT
TAACCATAAGTTGACGAGGTTGTAAGTGCTGAACTTGCATCGCGATAAAA
AATCGCCGGGGAGAACCGGGAAGAGATGGGAAGATCCTTCGTGTCCACAA
GCAGGATGGATGATGGCAACGTTGCAGTAGGTGGGATAGGAAACCTAGCA
TGCTGAGACCCTTCATCATGGCCCGTATTACGGTTAGTAATAATATATAA
GTTAAGTGCAGCATCCCACCTAAGGTACATCTTGAGACAAAATCGCAGCA
CTAAAGAGGTGGAGCTTTTATATATGGCTTATTCCAATAATCGTAGACGA
ACCTTAACCTGGGCGGGCGTTGAGAAGCGAACGGGCGTCAGCAGGGAAAG
GAACCGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1435:167362..172069-

>mRNA_F-serratus_M_contig1435.3116.1 ID=mRNA_F-serratus_M_contig1435.3116.1|Name=mRNA_F-serratus_M_contig1435.3116.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig1435:167362..172069- (Fucus serratus male)
ATGTTTATCCTGCCTGTGTGGCGAGAAAGCGGCCACTTCATGATGCTTTC
TCAGTACCAAGACACGTGCTTCCTTCTTACCTTTCTCGAGATGTTTATCC
TGCCTGTGTGGCGAGAAAGCGGCCACTTCATGATGCTTTCTCAGTACCAA
GACACGTGCTTCCTTCTTACCTTTCTCGAGGACTACAAGGTCAATCCGAC
TGGAGCTCAGCCCTACGCTACGATATCTATGTACGAAGACCTGGTGAAGA
GCAAAGGGCTGGGGCTCTTACGAGCCGACCTCACGCCAAACCTCACCAAA
AAGGACTACAAGGTCAATCCGACTGGAGCTCAGCCCTACGCTACGATATC
TATGTACGAAGACCTGGTGAAGAGCAAAGGGCTGGGGCTCTTACGAGCCG
ACCTCACGCCAAACCTCACCAAAAAGGAAGTTGAGAGGCTGCTGAGGCTC
CTTATCCGTTTTTACTCCCCACACGCTCACCACTACGTTGAGGCCTTCAA
CCACAGGCCGGGAGAGTTCAACCTAGAAAAATTTCTTCAGGAGACGCCAA
GAGATTGAGAAGTTGAGAGGCTGCTGAGGCTCCTTATCCGTTTTTACTCC
CCACACGCTCACCACTACGTTGAGGCCTTCAACCACAGGCCGGGAGAGTT
CAACCTAGAAAAATTTCTTCAGGAGACGCCAAGAGATTGA
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