mRNA_F-serratus_M_contig1434.3109.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1434.3109.1
Unique NamemRNA_F-serratus_M_contig1434.3109.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1434.3109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1434contigF-serratus_M_contig1434:199999..201698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size305
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1434.3109.1prot_F-serratus_M_contig1434.3109.1Fucus serratus malepolypeptideF-serratus_M_contig1434 199999..201698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.7230575-CDS-F-serratus_M_contig1434:199998..2000291622929419.7230575-CDS-F-serratus_M_contig1434:199998..200029Fucus serratus maleCDSF-serratus_M_contig1434 199999..200029 -
1690962843.4267662-CDS-F-serratus_M_contig1434:199998..2000291690962843.4267662-CDS-F-serratus_M_contig1434:199998..200029Fucus serratus maleCDSF-serratus_M_contig1434 199999..200029 -
1622929419.736269-CDS-F-serratus_M_contig1434:200384..2005741622929419.736269-CDS-F-serratus_M_contig1434:200384..200574Fucus serratus maleCDSF-serratus_M_contig1434 200385..200574 -
1690962843.4374485-CDS-F-serratus_M_contig1434:200384..2005741690962843.4374485-CDS-F-serratus_M_contig1434:200384..200574Fucus serratus maleCDSF-serratus_M_contig1434 200385..200574 -
1622929419.7502651-CDS-F-serratus_M_contig1434:201616..2016981622929419.7502651-CDS-F-serratus_M_contig1434:201616..201698Fucus serratus maleCDSF-serratus_M_contig1434 201617..201698 -
1690962843.4473166-CDS-F-serratus_M_contig1434:201616..2016981690962843.4473166-CDS-F-serratus_M_contig1434:201616..201698Fucus serratus maleCDSF-serratus_M_contig1434 201617..201698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1434.3109.1

>prot_F-serratus_M_contig1434.3109.1 ID=prot_F-serratus_M_contig1434.3109.1|Name=mRNA_F-serratus_M_contig1434.3109.1|organism=Fucus serratus male|type=polypeptide|length=101bp
GWIGLRTAGHWLARRLHQLKASTTMDLETTVKLTKQVGIETKGPPLRASE
ALMNKAYALFGLSDNGEEAQESKPGKLWTGCSVDGTGWRNGSRFVHLEME
Q
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mRNA from alignment at F-serratus_M_contig1434:199999..201698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1434.3109.1 ID=mRNA_F-serratus_M_contig1434.3109.1|Name=mRNA_F-serratus_M_contig1434.3109.1|organism=Fucus serratus male|type=mRNA|length=1700bp|location=Sequence derived from alignment at F-serratus_M_contig1434:199999..201698- (Fucus serratus male)
GGATGGATAGGGCTTCGGACGGCTGGACACTGGCTCGCGCGCCGGCTTCA
CCAGCTCAAGGCCTCCACCACCATGGACCTCGGTATTTCAATTTTCCTTA
TTTCTGTACGATTGTGTGGCCTTGAGAAACTTGGACTTCTTGTTGATCAA
AACTGGTTGGAGCGTGATTCTTCCGGTTTTTTGCTGAGAACGCTGGTCAT
GGGTAGGCGACAACAATCCGAATCGATCGAGGTTGCCCTCGATATGGAGT
AAGGATGTTTGATGAACCGTTTTGATATTGGTCGGTGCCATTGCTTGTAG
AGTCGCATAACTTTTTGTCGCGATTTGGATCCCTGTTGGTCTGAGTAGCG
GGTTGTCACCATGACGTGGCCCGTCGACCTTGGTGTACCTCTTTGTGACC
ACAAGCGGGATTAACATTTGATGGGTCTATGGCTGACTTGTTGTGTCACC
GTAGTTTCTGCAGTTGCCTTGACAATACGCTGAATGTGTGAATCGACGAC
AGCAACAACAAACCCCGTTCACTTGCTCCCTGCCGACCCCGTACTATCTA
CTGTCGGATTTAAAAGGTCTTGAATGAATTCGCGGAGACTTTCTTCCGGC
CTTCGGTCGAGGCTCACGAGGGCTACAACGGGGACCGCATACGTGGAACA
TTGACCTGGCGTGATCTTACTGGAAACAGTTGAACCTTCGTCGAGGCGCC
TCTTACAGGTTCAACTGTTCCCAGTAAGATCACGCCAGGTCAATGTTCCA
CGTATGCGGTCCCCGTTGTAGCCCTCGTGAGCCTCGACCGAAGGCCGGAA
GAAAGTCTCCGCGAATTCATTCAAGACCTTTAAATCCGACAGTAGATAGT
ACGGGGTCGGCAGGGAGCAAGTGGACGGGGTTTGTTGTTGTTGTTGTTGA
TTCACACATTCAGCGTATTGTCAAGGCAACTGAAGAAGCCCAACACCTTG
AAATATGATGTACCATAGCTCATGTATCCCCTTCGCATGCTTTTATAACA
CCTCTCTCTCCCTCTCTCTCTCTTTCTCCCTCTCGCTCTTTCTGTCTCGC
TCTCGCTCTCTCTGTCTCGTTCTCTCTCTCCCTTCCCGCTTCCCACGAAC
GATGGGTGATACCTATGGCCATAGAAACGACGGTGAAGTTGACAAAACAG
GTCGGTATCGAGACCAAGGGCCCACCTCTCCGGGCTTCGGAGGCACTTAT
GAATAAAGCTTATGCACTATTCGGCCTTTCCGACAACGGCGAGGAAGCCC
AGGAAAGCAAGCCGGGCAAATTGTGGACGGGGTGCAGTGTGGACGGGACC
GGTTGGAGAAACGGGTGAGGATTAACTTTGATTAGGTGTACGATAGAGAT
ATATTACACTGATCACGTGTTACACCACTTCGACCTGCTTGGAGAGCCAA
GAACAAAATACTGCTGAGTCTCCAAGTATGGCCGGAGAGGTTCATGCATG
TTTGTTCAATCCAGAGCGTGTTTTTTTTTGATCCCGGTAATTAAACAACG
AATCGGCTCGGTCGTCTCCACATTCACGAAGTCATCGGTACATGGACCGT
CGATCAACCCTACTAATACGACGCCGAAACCAGAAAAAGACTTGCACCTC
TGCCAACATGCCTCAGTCGTATCTAATTGTGTGGCCCTTTGTGGGTACTA
CACCGCGCATTGTTCACAGCTCCCGCTTCGTACACTTGGAAATGGAACAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1434:199999..201698-

>mRNA_F-serratus_M_contig1434.3109.1 ID=mRNA_F-serratus_M_contig1434.3109.1|Name=mRNA_F-serratus_M_contig1434.3109.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1434:199999..201698- (Fucus serratus male)
GGATGGATAGGGCTTCGGACGGCTGGACACTGGCTCGCGCGCCGGCTTCA
CCAGCTCAAGGCCTCCACCACCATGGACCTCGGGATGGATAGGGCTTCGG
ACGGCTGGACACTGGCTCGCGCGCCGGCTTCACCAGCTCAAGGCCTCCAC
CACCATGGACCTCGAAACGACGGTGAAGTTGACAAAACAGGTCGGTATCG
AGACCAAGGGCCCACCTCTCCGGGCTTCGGAGGCACTTATGAATAAAGCT
TATGCACTATTCGGCCTTTCCGACAACGGCGAGGAAGCCCAGGAAAGCAA
GCCGGGCAAATTGTGGACGGGGTGCAGTGTGGACGGGACCGGTTGGAGAA
ACGGAAACGACGGTGAAGTTGACAAAACAGGTCGGTATCGAGACCAAGGG
CCCACCTCTCCGGGCTTCGGAGGCACTTATGAATAAAGCTTATGCACTAT
TCGGCCTTTCCGACAACGGCGAGGAAGCCCAGGAAAGCAAGCCGGGCAAA
TTGTGGACGGGGTGCAGTGTGGACGGGACCGGTTGGAGAAACGGCTCCCG
CTTCGTACACTTGGAAATGGAACAGCTCCCGCTTCGTACACTTGGAAATG
GAACAG
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