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Homology
BLAST of mRNA_F-serratus_M_contig1434.3106.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI) HSP 1 Score: 166 bits (420), Expect = 1.300e-47 Identity = 74/108 (68.52%), Postives = 92/108 (85.19%), Query Frame = 2
Query: 155 MLFALAAGIFSTSYGQECSYSALSDAAQEQLDVYDKDLYLEPDCVNGAVPLPVHCNYMGLGQECRGCYLTCDGAMQYMEDFPEEIAVWGVDAIIHFCSSAEVDDLDEC 478
++FA+ + F+ +EC S+LSDAAQEQL +YDKDLYLEPDCVNGA P+PVHCNYMGLGQECRGC++TCDGA +Y++DF EEI+VWGVDAI+HFC AEV+ L+EC
Sbjct: 10 IIFAVLS--FARVKAEECIVSSLSDAAQEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
BLAST of mRNA_F-serratus_M_contig1434.3106.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI) HSP 1 Score: 126 bits (317), Expect = 2.320e-28 Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 2
Query: 206 CSYSALSDAAQEQLDVYDKDLYLEPDCVNGAVPLPVHCNYMGLGQECRGCYLTCDGAMQYMEDFPEEIAVWGVDAIIHFCSSAEVDDLDEC 478
CS +L+DA Q+QL +YD D+YLE DCVN + PLP+ CNYMGLGQECRGC+LTC GA+ Y++D E I +G DA+I+FC +EV DL EC
Sbjct: 584 CSMDSLNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAEC 674
BLAST of mRNA_F-serratus_M_contig1434.3106.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 3.700e-19 Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 2
Query: 200 QECSYSALSDAAQEQLDVYDKDLYLEPDCVNGAVPLPVHCNYMGLGQECRGCYLTCDGAMQYMEDFPEEIAVWGVDAIIHFCSSAEVDDLDEC 478
Q CS +L+D Q+QL++Y+ D+YLE DCVN + PLP+ CNYMGLGQECRGC+L A+ +++ G DA+I+FC +EV DL EC
Sbjct: 487 QSCSRDSLNDVDQQQLNLYENDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFL----ALAHVK---------GEDAVINFCPQSEVSDLAEC 566
BLAST of mRNA_F-serratus_M_contig1434.3106.1 vs. uniprot
Match: A0A6H5KP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP24_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 6.050e-15 Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query: 251 VYDKDLYLEPDCVNGAVPLPVHCNYMGLGQECRGCYL 361
+YDK LYLEPDCVNGA P+PVHCNYMGLGQECRGC++
Sbjct: 1 MYDKGLYLEPDCVNGASPMPVHCNYMGLGQECRGCFM 37
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_003370.1 |
| Exons | 3 |
| Model size | 1084 |
| Cds size | 345 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929419.7876709-UTR-F-serratus_M_contig1434:45263..45866 | 1622929419.7876709-UTR-F-serratus_M_contig1434:45263..45866 | Fucus serratus male | UTR | F-serratus_M_contig1434 45264..45866 - |
| 1690962843.4571197-UTR-F-serratus_M_contig1434:45263..45866 | 1690962843.4571197-UTR-F-serratus_M_contig1434:45263..45866 | Fucus serratus male | UTR | F-serratus_M_contig1434 45264..45866 - |
| 1622929419.8525157-UTR-F-serratus_M_contig1434:51372..51508 | 1622929419.8525157-UTR-F-serratus_M_contig1434:51372..51508 | Fucus serratus male | UTR | F-serratus_M_contig1434 51373..51508 - |
| 1690962843.504166-UTR-F-serratus_M_contig1434:51372..51508 | 1690962843.504166-UTR-F-serratus_M_contig1434:51372..51508 | Fucus serratus male | UTR | F-serratus_M_contig1434 51373..51508 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929419.8051693-CDS-F-serratus_M_contig1434:45866..45929 | 1622929419.8051693-CDS-F-serratus_M_contig1434:45866..45929 | Fucus serratus male | CDS | F-serratus_M_contig1434 45867..45929 - |
| 1690962843.4684103-CDS-F-serratus_M_contig1434:45866..45929 | 1690962843.4684103-CDS-F-serratus_M_contig1434:45866..45929 | Fucus serratus male | CDS | F-serratus_M_contig1434 45867..45929 - |
| 1622929419.819997-CDS-F-serratus_M_contig1434:48757..48981 | 1622929419.819997-CDS-F-serratus_M_contig1434:48757..48981 | Fucus serratus male | CDS | F-serratus_M_contig1434 48758..48981 - |
| 1690962843.4804516-CDS-F-serratus_M_contig1434:48757..48981 | 1690962843.4804516-CDS-F-serratus_M_contig1434:48757..48981 | Fucus serratus male | CDS | F-serratus_M_contig1434 48758..48981 - |
| 1622929419.836804-CDS-F-serratus_M_contig1434:51314..51372 | 1622929419.836804-CDS-F-serratus_M_contig1434:51314..51372 | Fucus serratus male | CDS | F-serratus_M_contig1434 51315..51372 - |
| 1690962843.496264-CDS-F-serratus_M_contig1434:51314..51372 | 1690962843.496264-CDS-F-serratus_M_contig1434:51314..51372 | Fucus serratus male | CDS | F-serratus_M_contig1434 51315..51372 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1434.3106.1 >prot_F-serratus_M_contig1434.3106.1 ID=prot_F-serratus_M_contig1434.3106.1|Name=mRNA_F-serratus_M_contig1434.3106.1|organism=Fucus serratus male|type=polypeptide|length=115bp
MKTSVSMLFALAAGIFSTSYGQECSYSALSDAAQEQLDVYDKDLYLEPDC VNGAVPLPVHCNYMGLGQECRGCYLTCDGAMQYMEDFPEEIAVWGVDAII HFCSSAEVDDLDEC* back to topmRNA from alignment at F-serratus_M_contig1434:45264..51508- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1434.3106.1 ID=mRNA_F-serratus_M_contig1434.3106.1|Name=mRNA_F-serratus_M_contig1434.3106.1|organism=Fucus serratus male|type=mRNA|length=6245bp|location=Sequence derived from alignment at F-serratus_M_contig1434:45264..51508- (Fucus serratus male) CCCCACTTGACACAACACACACACACACAGCAGAGAGAGCTTCTTCGCCA
AGAGTCAGTCTACGTACACACACACCCCATTTCGAAGCCTCCACGCGTCG
TCATCCACCTTGAACAAGACACACAACTGAGAGAACATGAAGACCTCTGT
ATCTATGCTCTTCGCCCTCGCCGCGGGTATCTTCAGCACTTCATGTGAGC
AGATCCCGTCGTTCGAGTACTACAATACTCTCCTCGTACAGGTTTTTGCG
TCGGAGATGACACTGAAACGCTTCCCAAACATGTTGTACCGGTACATATA
CCAGATACAGTACAAATTTCGCCCTTAGAGTGCAGTCAGTACTTGCACTC
ATACATACATACATAAGCGAGTCGTGCATCACTCTAGTTTTTTGCAGAGG
GTGTGCTGTATGGAATATCTGGAGCCTGGAGATTTTTGCTTTCGCGAAGA
AGCTCGCCACTGATGAGTGAGGTATAAATATGTATGTAGTGGAACGCTCG
GCAACGACCTGTTGCACTGCCGCTTTACTCAGACGAAGGCCCAAAATTTA
TTAAACGACCCAACACACGAAGTTCTGGCCAAATGTCAATTATTGCCACA
CACCCAACGTCATCGCCGCCGTGTAGTAAGTGAGTCATCTATTTCCGCTC
TCGAAGGCTCGGAGGCACACCGCAGAAAGTACTACAGTCTCCAGTGCCAA
ACCAGCAAAGTACAGTGGAAAGGGGCCACCTCCCCGTCCGCAGTTGGATG
AGTTATCGGGGAGTTACCAGTTATTCGTCGAGTGTCATAGTAGATTCAGC
CTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGAAACCGT
CTCGCGAGACCAAATTCTCAGGCGCGAACGCGGACAGGGGAAATATTATT
TTTCCTTGTTCAGCTGACCACAAGCAGGATTGGCAACCTTACTAGGTTGA
TCCATACTCTTGCTATATGTGTGACCATACATAGTAGAATCAGACGGAGA
AACACACCCGCCACGCGAAGCCTTTCGAAGCATACAGAAATAGTTTCGAA
CACAGAATAAAAGTGTCTCTGATTTTCATACGTTTTTTTGGTTCTGAAAC
ATATCGCAGGTATACACAGTTCTACAGATATTAGAGAACCGTAGTTTCAT
CCTCCAATTTCATTTTTGCGTCCAGCAATAATCAACCGTTGACGCTGCTG
CTGCTGCTGCTGCTGCTGCAGAAGGACCACATTTTTTTTCAGCAAAATGT
TGGCGCGAAGGGGCATAAATAACCGCCCCTCCATATCCAAACAAGCGTTT
TTTTGGGAGCTCTCTGAAAATACAGTTTGGTACCGGTACAACATGTTGAT
AACTTATGAATAGCACAGCAGTTCGAAAATACATTGTTCCCTCAATGCTG
CTCTGGCTTTATTTTTCGCCGATTCCGCTTGTACCAAAATGTGGTCAGTT
GGGAAGGCGGGAGATGAGATAAAAATTTACATTTTTTCCCCCTGACTGGG
GGATGCTCTTCTAGGTGCGTTCTGTATTTTCTTCTTCTTCAAAAAAAAAG
CTGGAATAGAATAAAAAAAATAAAAAAAATAAAAAAATAAAAAAATATAT
CATAGTAATAACAAGTAATAAGCACGAGAGGTACAGTAGGGGAAAGCTCG
CAAGTCCTCGCAACACTACTACTCGATCGAGTAAACTTCACAGGCTGTGT
ACTCCAAAAGTTATGTTATTTCTCTAAAAAAGTTGCCTGACGGAGGAACT
TGTGTATAATCAGCATGGCGTCGTTTGGCTGTTTTCACAAAAAATAGATG
AAGAGGACAGAGCATCTCGTACTTAATACGGTAGTCTAGAGGCATAATAC
TTGCTGGTAAAAAATAATTTGTAACATGGACGCGCGTGCCACATGTGAAA
CACGAAAATATAATACTGGTATCGAGATAAGACTCGATGATCTACAGACA
TCTGAACGTAAACTCGTGAGTAAACCTACTTGCAGTAAACAGACCGCTGG
CGCATCCGATAGCCGCTCAAGGGTATAGTTTGTTTACTGCAAGGAAAAAT
GATAACTTGAGGGGTATGCACTCACCCCCTGCTCCCCTGCATACAGTTAG
TAATAATATAGTCTCTATATGCATACCTCTTCGGAGAGTCTTCTTGCTGT
TGACTTCTTCTTCCTTCGTTACTACTACGACTGTAGAGGGCATGCATATT
CAACGTTCCACTGGCGGCGGTGTCGTTACAGTATTCAGTATTCGCATGTG
ACTTCTTTCGCAAAACGTCCGTGCCATGCCATGGTGTCGGTCGACCTCTC
TGTCTACTTAATGAACACAGAGACACCGTAATGCGCAAACTATAATTCTA
CAAATAAATAACGTATCAGCTTTGTTCTTTCCTTCTGTAGAAAATACCGC
ATTTGATTTGACTGTTTAAAGAAAAATCCGAACGTTACTACCATCGAAAT
ACCTACTACTACTACTACTACTGTATACTTGCCAACCCGCTTCATTGCCT
ACTTCCCGAACTGAACCCAACCACCAGATGGCCAGGAGTGCAGCTATTCG
GCTCTCTCGGACGCCGCCCAGGAGCAGCTCGACGTGTATGACAAGGACCT
GTACCTCGAGCCCGATTGCGTCAACGGCGCAGTGCCCTTGCCTGTGCACT
GCAACTACATGGGGCTCGGCCAGGAGTGCCGCGGATGCTACCTGACCTGC
GACGGGGCTATGCAGTACATGGAAGACTTCCCGGAGGAGATTGCAGTCTG
GGTGAGCCTATTATGATCCCACCTAACCGTTTTGACACATTACAAAAGGT
ACAACGAAGAGATTTTGTATAATATGTAGCCTATGATTCCATCTAACCGT
TTTGACACATTTTCCCCCGACTGGGGGATGCTCAGAAGGGCGCGCCTATC
CCAATTCATGGGCTGTGGGTAGAGAACCAAAAAGGGGACATAAGACAAAA
GGCGCTGGGCAGTACAGCAAGGGTATGCATTAACCGGTTAAGGTTGCCAA
TCCTGCACGTGGTCACCTGAACAGGGAAAATTGATATTCCCCTGTCCGCG
TTCGCGCCTGAGAACTTGGTCTCGCGAGACGGGTTCGACAGTCCCGTCCT
GCGTCAGCCTGCTCATCTGCATACTGTACTCGGGCTGAATCTATTAATAG
TGCTTACTTACCTGTTACGGGATTCATCACAAGTTCCGCGGCGGCGTCCC
TTATTTGTCTTTGGGTCGGTCCCGCGGGTTTATCGGGTCATCCAATTGCC
TACCGATGGCGTTCGCTGCCGAGAGTGCGCCGGCACAGGGCCAGTAAACC
TCAAGATAGTTCCGAACGGGTGTTATCTTGGCAGGTCTCACCATGGGCCA
TTATTTGATCTGCACCTCTCTTTCCCACACCCACTACTGGTACGAAGTGG
GTATGTTGAACGTACCAGTAGTTCAGTCAAAAGGTACAGATATTTATAGT
ATATATATATGAAACGACATCAAAGACGGAAGATCAATTACTACTGTCAC
CCGGTCGCCCCGGTGGTTAAGTTGGAACGTGAGTTCGAATCTCGGTGCAG
TCACACGAACTGAGATCCTTCCTCATAAATTATAACAATCTGTGTTTTTT
TCTTTAAATAATACCATGTTAAAATAATAACAATAAATCTTGCCCAACAA
GCGTGGAGAACGACTAATTCGTGGGTACACAAAATTCGACTTCACGATCG
ATGAGGAAAAGGGACGGCTGGACAGGAAGGTGGACAGGAAGGTGGACAAA
TCCCGAGTGGCCTCCAGAATAAGTGGGATGACAACACACACCACGCAGAG
ATCAAAGTCAGAGTATCCCCGATGTCTCCCCTTTACCACCGTCAGCTCCT
AGGACCTGTAAGCAGTAGCAATAATAATAGTATGGTGACACATATATCAA
TAATGGGTATGGCTATTTGCCCCACCGGTGGGCAATTCTCTTGTTTACCC
CCCCACCTGGATCTCGCGCCAGAAGACTTGGTTGGTCACAGTACATGCAT
GGGTGTGTTAGGGTTAGGGTTAGCTATCATGGAGTCCATCGTGCAGCCCA
AACGGTCCTGTCTACGTGCTACCACAGCCGGTGGGGTGGTTGGTGCTTTC
TGGTATTTATGTCTATTTGCCCTTACATACCAGAAAACACCAACCACCCC
ACCGGCCGTAACAGCACGTAGACAGGACCGTTTGGGCTGCACGATAGACC
CCATGATATCCCTGCGACGCGCCAACATACTCATGCATGTACTGCGATCA
ACCGTGCCTTCTGACGCGAGATCCAGGTGGTGGGGTAAATTTGGGGATGG
CCCACCGGTGGGGCAAATAGCGATATCCATCAAAAATAGTATGGATCAAC
CGGGTAAGGTTGCCGATACTTCACGCGTCGTCAGCCGGACAGGGAAACTG
AATATTTCCCTGTCCGCGTTCGTGCCTGAAAATTTGGTCTCGCGAGACGG
GTTCGACAGTTCCGTCCGGCGCCAGCCTGCTCATCTCCATACTCAGGCTG
AATATAGTGCTTGCTTTCGGGATTCCTCCCGAGTTCCGCGGCGGCGTCAA
TTTACTTATTATTATTTAGAACCGCCATACGCCATCGGGTCAGTCCCAAG
TTTATCGGGTCAAGCAAATACGTACCGATGGCGTTCACTGCCGAGAGTCC
GCCGATACATGGCCAGTAAACCTCAAGGTAGTTGTTGTTGTTGTGTCTTC
ACATTAAAAACCATTCCGATCTCTGCTCGGTACCTTCCAACATCCGTACT
GGCCCAACTGACGCGAACGCCTTCCTCCGTGGCCACAGGCTAACTACTCC
AAAAGGGTATATATTATGAGAAATGAACGAGAAATAAAGGACTCAGAGAA
GCCAACACATAGGCGATAATAGGAACCCCCCTCCCTCCGAAAAAAAAAAG
TAGACTGAAAAAAAATGCCTTGGCAAGTTGGACCAAATGATATTCGCGTC
TCTTTCCCACATCCACTACTACTACTGGTATGAAGTGGGCATGTTGAAAG
AAGTACATACCGACGTGATGGTGCATCAAAAACAGTTACTACATGGAATA
AGCGGAAAAGGATTGCCAGCGGGAAAATACAAAATGTCGTAAACCTTTCT
GGTCGTACATATTATTTGCTGTGGGGTTTTCTCTTCATTCTGTCTTCCTT
TTGTCGTTTTTTGTTTTTTGCGTGCAGCAGTAGTAGTGTTTTAAAGAAAA
ATGTTCTATTTTCAATGCTCGCGTTGGAGCTTGGTGGAGATGTTCCGCTG
ATACTTTCCTGTCCAGTAAAACCCACAAATCGGATTGTTGGCAACCGCGT
GTTGGGTATATAGTCAGTATCATCGTTGAGACCGGATCGATCGAGTAATT
TGAAGAACATACATACACATACACACACACACAACAACACAACCAATGTC
CTGTCATAAAATGACAAATAATCTGTAATAAGCAGGGTCGGATTGCTGCG
CGGTTATTATGTGCAATTTAATAAATAAATGCACACACACCCTCTCACTA
AACATATATCTCTCTTCTCTCTAATTGACCTTCATTGGATGCGTTTCGCG
TTAACGCCTCTTCCCTCGTGCTAATGCAGGGGGTGGACGCCATCATCCAC
TTCTGTTCCAGCGCCGAGGTTGATGACCTCGACGAGTGCTAGACTCGCCT
CATAGGAAGACACTCCATGGGCGGTCGGCGTTCGACCTCGCCTGTTCGTC
TGAGATATGTCCGGTTCACGATCTCGTGCCGGCGACCGGATAGATTATTG
CTGGAATTTAACATCTTGGCACTTCGAGTCGGCCAGGTGTACGCCGAGCC
TTACTCTTCTTTGTGGTGGCTGTGGTACGGTATGCCATCCCCAACGGATG
GCAAGGGAGGTTGAAATCATTTCCCAGCTACGAGTACTTTTTTATAGAGT
ATTATTCGGCACTCAGCTGATGCACCTGGTTATTATATGAAACACGAACA
AGCTTACTACTGTTATTATTGTTGATCAAGGAACTCAGAACTGTGCCCTT
AGAGCAGTCGACGTACTACATAGAAGACGCTAATCGGCTATCCGGCGTAA
GGTCCAGCCTACCGCTGTGAAAGATACCCTGGGGCGCTGTACTTCATAAT
ACCGAGGTGTAGAGATAATGGTGGGTGGGTGGAGAAACCCGCCCTGAGGA
TTTTTCTTTTTTCTTTTTGTGAGTCAAGACAAACGTATACGCCTGCATTT
TTTTCGCTTGTTTCTGGAGGATATATTATATCGTTATTTGACGAT back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1434:45264..51508- >mRNA_F-serratus_M_contig1434.3106.1 ID=mRNA_F-serratus_M_contig1434.3106.1|Name=mRNA_F-serratus_M_contig1434.3106.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig1434:45264..51508- (Fucus serratus male) ATGAAGACCTCTGTATCTATGCTCTTCGCCCTCGCCGCGGGTATCTTCAG CACTTCATATGAAGACCTCTGTATCTATGCTCTTCGCCCTCGCCGCGGGT ATCTTCAGCACTTCATATGGCCAGGAGTGCAGCTATTCGGCTCTCTCGGA CGCCGCCCAGGAGCAGCTCGACGTGTATGACAAGGACCTGTACCTCGAGC CCGATTGCGTCAACGGCGCAGTGCCCTTGCCTGTGCACTGCAACTACATG GGGCTCGGCCAGGAGTGCCGCGGATGCTACCTGACCTGCGACGGGGCTAT GCAGTACATGGAAGACTTCCCGGAGGAGATTGCAGTCTGGATGGCCAGGA GTGCAGCTATTCGGCTCTCTCGGACGCCGCCCAGGAGCAGCTCGACGTGT ATGACAAGGACCTGTACCTCGAGCCCGATTGCGTCAACGGCGCAGTGCCC TTGCCTGTGCACTGCAACTACATGGGGCTCGGCCAGGAGTGCCGCGGATG CTACCTGACCTGCGACGGGGCTATGCAGTACATGGAAGACTTCCCGGAGG AGATTGCAGTCTGGGGGGTGGACGCCATCATCCACTTCTGTTCCAGCGCC GAGGTTGATGACCTCGACGAGTGCTAGGGGGTGGACGCCATCATCCACTT CTGTTCCAGCGCCGAGGTTGATGACCTCGACGAGTGCTAG back to top
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