mRNA_F-serratus_M_contig143.3073.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3073.1
Unique NamemRNA_F-serratus_M_contig143.3073.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:418863..421036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size996
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3073.1prot_F-serratus_M_contig143.3073.1Fucus serratus malepolypeptideF-serratus_M_contig143 418867..420305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.72134-UTR-F-serratus_M_contig143:418862..4188661622929414.72134-UTR-F-serratus_M_contig143:418862..418866Fucus serratus maleUTRF-serratus_M_contig143 418863..418866 +
1690962841.0334182-UTR-F-serratus_M_contig143:418862..4188661690962841.0334182-UTR-F-serratus_M_contig143:418862..418866Fucus serratus maleUTRF-serratus_M_contig143 418863..418866 +
1622929414.7686846-UTR-F-serratus_M_contig143:420305..4210361622929414.7686846-UTR-F-serratus_M_contig143:420305..421036Fucus serratus maleUTRF-serratus_M_contig143 420306..421036 +
1690962841.0621784-UTR-F-serratus_M_contig143:420305..4210361690962841.0621784-UTR-F-serratus_M_contig143:420305..421036Fucus serratus maleUTRF-serratus_M_contig143 420306..421036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.735567-CDS-F-serratus_M_contig143:418866..4190221622929414.735567-CDS-F-serratus_M_contig143:418866..419022Fucus serratus maleCDSF-serratus_M_contig143 418867..419022 +
1690962841.0429792-CDS-F-serratus_M_contig143:418866..4190221690962841.0429792-CDS-F-serratus_M_contig143:418866..419022Fucus serratus maleCDSF-serratus_M_contig143 418867..419022 +
1622929414.750324-CDS-F-serratus_M_contig143:420200..4203051622929414.750324-CDS-F-serratus_M_contig143:420200..420305Fucus serratus maleCDSF-serratus_M_contig143 420201..420305 +
1690962841.0544515-CDS-F-serratus_M_contig143:420200..4203051690962841.0544515-CDS-F-serratus_M_contig143:420200..420305Fucus serratus maleCDSF-serratus_M_contig143 420201..420305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3073.1

>prot_F-serratus_M_contig143.3073.1 ID=prot_F-serratus_M_contig143.3073.1|Name=mRNA_F-serratus_M_contig143.3073.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MPIAQTPWSGSMQAALTFAGWYFHRNVLYAAGAQGANIIAVGPGVIGLLE
PAVRAMVNLSTILRKLHFFQVGFVQESMEAFKGALF*
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mRNA from alignment at F-serratus_M_contig143:418863..421036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3073.1 ID=mRNA_F-serratus_M_contig143.3073.1|Name=mRNA_F-serratus_M_contig143.3073.1|organism=Fucus serratus male|type=mRNA|length=2174bp|location=Sequence derived from alignment at F-serratus_M_contig143:418863..421036+ (Fucus serratus male)
GTACATGCCAATCGCCCAGACGCCTTGGTCCGGCTCCATGCAAGCCGCGC
TCACCTTTGCCGGTTGGTACTTTCACCGAAACGTCTTGTACGCGGCGGGA
GCACAAGGGGCTAACATTATAGCGGTGGGGCCCGGCGTCATCGGACTCCT
CGAGCCCGCGGTGCGAAAGAGGAAGTGTCCCCGTCTTAACCAGCGTTTGT
CGAGGAGGCGTTTCGATCCCCCCCCCCCCCCCCCCCCCTTCTTCTATCTC
GCTTTCTAACAGCGACGCGCCATTCAACGCGCTCTATTTTAATACTTTAT
ATATACTTGTAGGTTGTTAGTCTCGCCCCTGCTTCGACGCTGGTCATCTC
ATCCCCTACTTGTGTTGCTTGTGTTCCCCAGGGATAATATACCTGTGTAA
GGGTCAAAACCCATATATATATATATAGCTCTAATCTATTTACGGTGCAA
GCGTGTACGACATCGTGTACATTACCCCACATATTTGCGTTACCTACAAA
TCCTCACGCTTTCCGCCACAGCCGCTAATGATTAAAACTATTTACTGTAG
TCTAGTGAGTTCCCCCCCCCCCGGCCCCCTCTCCCCTCCCAAGATTAGAC
CTCGGGAGCTGATGTGTACAATAACAGTGTAATAGTAAAATAATTAACCT
GTCACGCGGTGGCTCGCGCGGCGCCCTTCTGTACTAATTATTAGTATGAT
AATAAATTATTCGCCAACAAAGGAAGAGTGCCCTAAGTTCGCTATTGTAT
CTACCTCCGTATTTTTAATAGTATTGGAACAATACGCGAACCTAGAGGTT
ATATATATACTGTTCAAATACTGGAATATCAGTATTATAGTCTATACTCC
GTAAGCGGTAACTTCATTAGTCTAGTCTATCCACGCTGCATTGATCTCGA
CCTCGAACATGTCCAGAGGCGTACGTTGCTCTAGTATGTACCTGTAGGAA
TGGTAAAAGCGTTTCATAAAAAAAGCATTATAGCTTGTCGATCAGGTTTA
GCCAACTAGAGTACTATTTAGTTGTAACATTTTTGACGAAAATTATTTCG
CCATGAGCCCGTGTACCTCTTCTGGGGCTAGTATTATTAGTGGCCCCCTC
GCCCCCCCCCCCCCCCCCCCCTACCCCCGAAAAAAAAATGCCACGGTTGA
CTCAGATAGAGGTTATGTTATCTAATAGTTACACGCCGTCCGTTCATCGT
TCATCGTTCATATAATAGATGAACCGCGCTGTGGGTGCTCCTTGACCGCC
AAAATATATTCCTCTTTCTATCACCCTTTCCCATATCACCCTAGGCTAAA
CTACGGTAGTAATTATTGTGTTGCTGCTTGTTTGGAAGGTCCGGGCCATG
GTGAACCTCAGCACGATCCTGCGCAAACTCCACTTCTTCCAAGTGGGCTT
CGTTCAAGAATCCATGGAAGCCTTCAAGGGCGCCCTGTTCTGACCTGATC
GAACGACAACTACTAGCCGTGATCGCATCATGAAACGAAAATCCACGCTT
ACACTTACACTTACGACACTTACGACACTCACTTCGTGTGAGTACAGTAT
CATAGTCATCTTCGAGTATCGTACGTAGAGCGTACAAAGCTGTACCGCAA
GCTCGACGCTTTTAGATTATACTGTGTGAAATACGTACCGGATGGGTCTA
ACGGTTTCGACATGCAGCAGTACAACATATGCTTTCGGAAATGGCGGGTA
CAACACCTGTGAACTCTGTTAGATACGGGATGTTGCGCGCGGCAATACCG
CCGTAAGCATGAACAATGATTTGGCAACATCGTTCGGTGAGTCGGGTGCA
GGTATTATACTGTACACTGTACGAAAGACACGGATCATGTTTACGAACTA
TGGTACAGAACAGTGCGGTATTGGAGCCACCTACAACCGTTGTCGTGATG
GTTCCGTGAGCGAGGCGTTATTGTGTGTGTGTGTGTGTGTGATGTTTATA
ACGGGGTTCAATGGTCCTTCCTTCCTCTACATGAGCTTCGATTCCTTACC
GTAGATGCCATGGTTGTAGCGTAAAAGAGGACCAATTACTATAATGCACC
TTATAGCATAGTAGGGGAGCAATAAACTATTAATATTAGATATTCTTGAC
TTTTCGGATTATATCCCTTACTCAAAGTACGGGTTGGGCACTGTGCCTAC
AGTAGGTGTAGTAATATTTATATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:418863..421036+

>mRNA_F-serratus_M_contig143.3073.1 ID=mRNA_F-serratus_M_contig143.3073.1|Name=mRNA_F-serratus_M_contig143.3073.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig143:418863..421036+ (Fucus serratus male)
ATGCCAATCGCCCAGACGCCTTGGTCCGGCTCCATGCAAGCCGCGCTCAC
CTTTGCCGGTTGGTACTTTCACCGAAACGTCTTGTACGCGGCGGGAGCAC
AAGGGGCTAACATTATAGCGGTGGGGCCCGGCGTCATCGGACTCCTCGAG
CCCGCGATGCCAATCGCCCAGACGCCTTGGTCCGGCTCCATGCAAGCCGC
GCTCACCTTTGCCGGTTGGTACTTTCACCGAAACGTCTTGTACGCGGCGG
GAGCACAAGGGGCTAACATTATAGCGGTGGGGCCCGGCGTCATCGGACTC
CTCGAGCCCGCGGTCCGGGCCATGGTGAACCTCAGCACGATCCTGCGCAA
ACTCCACTTCTTCCAAGTGGGCTTCGTTCAAGAATCCATGGAAGCCTTCA
AGGGCGCCCTGTTCTGAGTCCGGGCCATGGTGAACCTCAGCACGATCCTG
CGCAAACTCCACTTCTTCCAAGTGGGCTTCGTTCAAGAATCCATGGAAGC
CTTCAAGGGCGCCCTGTTCTGA
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