mRNA_F-serratus_M_contig1429.3056.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI) HSP 1 Score: 450 bits (1157), Expect = 2.460e-146 Identity = 296/669 (44.25%), Postives = 369/669 (55.16%), Query Frame = 2
Query: 11 MTAHNARDSKDSKERARKEARLRRQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHMEASPSLKKGKRVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSG-------SMDKSNGDGGNGCANSESGAGETGENINLDEALVRDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGP----------GTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNANRARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALLTLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWISLEPEAGARRRNNHCEHYPDQSRGVPPRSPSLSPSSPGNHPA----EKIPERFVERSPPFSNAGEG---------VSAWRGN---DALTPPVTEG-CSRDTTAQDGAHDAPTANSRRQVFRRKPST--VPAGAAGSLGEVQGEHDSGHSEIETEDQ---------GGLGAIRGLSPTEKAVAARECKRLLDRGRQAFLEWEAGLRSEMLYFVAREVTPENALLLGFR 1882
M+ + A SK +E+ R ++R RRQERK Q A KTGVWDRCLYRVPGK R+CAQ+RS HS+ +C THM + +KGKRVPCPVDPNHTVFEQ L SHVKICN+ +++A M PYYS+G+NSG LD+A V D++SRV AAHR VG++ TEVLD P VQALH RGL+GP G L+VEMGAGKG LGQ+I+ A P +D+TM+ERS+VRRKAEN+L+G + RARIDIRDLNM GLPSL +DRPVV VAKHLCG ATDLALRA+LTLP + + + G +GDP PA A T RV GGVAIATCCHH CNWRDY GR FL +QGF++ DF+ MRR+SAWISLEP+AGAR+ N YPD SPS +PG + + P + P G G W G +A TE C + + A + +S + P+ + A SL ++ + ++ I + L+P+EKAVAAR CKRLLDRGR+AF+E GLRSE+++FV +VTPENALLLGFR
Sbjct: 1 MSGNEAPRSKSIEEQTRADSRRRRQERKKAQLGALKTGVWDRCLYRVPGKGRYCAQHRSKHSASFCGTHM--GETAEKGKRVPCPVDPNHTVFEQQLSSHVKICNLALQQARMVAQPYYSEGINSGPPLLPGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDAFVVDLLSRVEAAHRDLVGEIPTEVLDPPEVQALH-----------------------------RGLVGPAGGDNGHGENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGV----STRARIDIRDLNMGGLPSLTAEG--DDRPVVAVAKHLCGVATDLALRAMLTLPPRPESRDADDGGHVGNGDPTAAPAAA-----------TTRV--------GGVAIATCCHHVCNWRDYVGRDFLTQQGFSARDFEAMRRISAWISLEPDAGARKNNR----YPDDRHPGVTSSPSFCRKTPGETASVAARSRRPAAETRKLEPVLEPGGGDCPRPGEREAYGWSGGGPGEAREGTWTEQLCGEREDSLERARETNRGHSSSPPWHTTPAPTFMTASTPSSLHSPTSDNANANTSIGDGSDVLXXXXXXXXXXXXLAPLTPSEKAVAARGCKRLLDRGRRAFIEERLGLRSEIVHFVGSDVTPENALLLGFR 609
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 9.540e-127 Identity = 298/743 (40.11%), Postives = 372/743 (50.07%), Query Frame = 2
Query: 11 MTAHNARDSKDSKERARKEARLRRQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHMEASPSLKKGKRVPCPVDPNHTVFEQLLGSHVK--------------------------ICNVVVREAEMEELPYYSKGVNSGSMDKSNGDGGNGCANSESGAGET------GENINLDEALVRDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNANRARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALR---------------------------------------------------ALLTLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWISLEPEAGARRRNNHCEHYPDQSR-GVPPRSPSLSPSSPGNHPAEKI--------PERFVERSPPFSNAGEGVSAWRGNDALTPPVTEGCSRDTTAQDGAHDAPTANSRRQVFRRKPSTVPAGAAGSLGEVQGEHDSG---HS----------------EIETEDQGGLGAIRG--------LSPTEKAVAARECKRLLDRGRQAFLEWEAGLRSEMLYFVAREVTPENALLLGFR 1882
M+ ++A SK E+ R ++R RRQERK+ Q A +TGVW+RCLYRVPGK R+CAQ HS+ +C THM + +KGKRVPCPVDPNHTVFEQ L SHVK +CN+ +++A M PYYS+G+NSG G+ G +LD+A V D++SRV AAHR VG++ TEVLD P VQALHR + G TG G G GP L+VEMGAGKG LGQ+I+ A P +D+TM+ERS+VRRKAEN+L+G + RARIDIRDL+M GLPSL A +DRPVV VAKHLCG ATDLALR A+LTLP +++ + G +GDP PA A T RV GGVAIATCCHH CNWRDY GR FL +QGF++ DF+ MRR+SAWISLEP+AGAR+ N YPD GV + S S P P E P + P G G W G D+ + G +A R ++ + S + GE G H S H+ ++ T D G L+P+EKA AAR CKRLLDRGR+AF+E GL SE+++FV +VTPENALLLGFR
Sbjct: 1 MSGNDAPRSKSIDEQTRADSRRRRQERKNAQLEALQTGVWERCLYRVPGKARYCAQ----HSASFCGTHM--GETAEKGKRVPCPVDPNHTVFEQQLSSHVKRSRRVSPQAPPAAPYRTMWHVGSTTKVCNLALQQARMVTQPYYSEGINSGPPLLPGEXXXXXXXXXXXXRGDVAVVAAVGAAADLDDAFVVDLLSRVEAAHRHLVGEIPTEVLDPPEVQALHRG--LVGPTG-------------AGGESGHGEDGPSV--LHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGV----STRARIDIRDLDMGGLPSLTA--AGDDRPVVAVAKHLCGVATDLALRRDGGATDGETNREKHQAGHLPFHLLVPRHFPPWLAVLALSLRRSLPNLYRRAMLTLPPRRESRDADDGGHVCNGDPTDAPAAA-----------TTRV--------GGVAIATCCHHVCNWRDYVGRDFLMQQGFSARDFEAMRRISAWISLEPDAGARKNNR----YPDDRHPGV-----TFSLSFPRKIPGETASVAAGSLRPAAETRKLQPVLEPGGGDGPWPGEREA----------DSCSGGGPGEA-----REGIWTEQFSGEGENSLERAGETNGGHSSSSPWHATAAPSLNMSASTPSSLQLPTSDNANASTSIGDGSEVLVPLTPSEKAAAARGCKRLLDRGRRAFIEERLGLCSEIVHFVGSDVTPENALLLGFR 671
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: W7TT10_9STRA (tRNA:m(4)X modification enzyme TRM13 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT10_9STRA) HSP 1 Score: 209 bits (533), Expect = 1.620e-55 Identity = 186/618 (30.10%), Postives = 276/618 (44.66%), Query Frame = 2
Query: 131 DRCLYRVPGKQRFCAQYRSPHSS------------EYCATHMEASPSLKKG--KRVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGSMDKSNGDGGNGCANSESGAGETGENINLDEALVRDVISRVNAAHRAHVGDLRTE----VLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTG-GGNANRARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALLTLPQKQKVLEERVEGSAEDGDPYLPPADADEDM---ETLFGG---GTPRVI----GRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQ-GFTSSDFDVMRRVSAWISLEPEAGARRRNNHCEHYPDQSRGVPPRSPSLSPSSPGNHPAEKIPERFVERSPPFSNAGEGVSAWRGNDALTPPVTEGCSRDTTAQDGA----HDAPTANSRRQVFRRKPSTVPAGAAGSLGEVQGEHDSGHSEIETEDQ-GGLGAIRGLSPTEKAVAARECKRLLDRGRQAFLEWEAGLRSEMLYFVAREVTPENALLLGF 1879
DRC + + K RFC R P S E CA + K+G +RVPCP+D NHTV+E+ L +H+++CNV + +E+ P+Y + +NSGS+ + G + +++DE V +++R+ R E + P + + + T K RH++QQAS++ H+ +RGLLG RS VE+GAG+G LG A+ A PEA + ++ER+ VR KA+ TG GG R R+DIRDL + GLP G P+V + KH+CG ATDL+LRA+ + EGS E+G P + + T+ G G+PR G++R G + IATCC+H C + DY G E G +F+V +R + W+S A RG R+ R AG A + C + T +G D R + RR + G+ GE G + E +D LG +GLS +K R CKRL+D GR A+L +GL +E L + +V+PEN+ +L +
Sbjct: 36 DRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRR---------------PGLNPQPLDVDE--VPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLG--ARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPL---GPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRD-------FEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVG-LVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSA----------------RG----------------------HRYKPRLREEGKAGRESYA------------DSCEEEETGAEGEGGVEDDRGVRGQREETVRR-----------TSGDAGGEQVGGRRQAEMDDAYTSLG--KGLSRDQKIQIGRACKRLIDYGRLAYLR-ASGLEAECLLYCEPDVSPENSCILAW 559
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: H3GHR1_PHYRM (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR1_PHYRM) HSP 1 Score: 198 bits (503), Expect = 1.110e-52 Identity = 148/433 (34.18%), Postives = 215/433 (49.65%), Query Frame = 2
Query: 80 RQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHM---EASPSLKKGK-------RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGSMDKSNGDGGNGCANSESGAGE---------TGENINLDEALVR----DVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNAN------RARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWIS 1288
R+ RK + A WDRC+++V K RFC R P S +C H+ +A+ S K K RVPCPVD +HTV+E L HV +CN V M++L YYS +NSGS +G A+SE AG+ E + + LV D+ R+ AA+ + VG+L E L L +++ + G RH+ QQASI+GHM + LL + + +VE+GAG+G L A++ P++ +I+R+ R KA+ + G G+ RA+IDIR LN AG+ + + D+PVV ++KHLCG ATDL+LRA+ TLP E+ G T I + G +AIA CCHH C W DY F E QGF +F+++ +++W +
Sbjct: 17 RKRRKQAKTDAKNGAQWDRCMFKVVRKNRFCNISRVP-GSLFCGNHLPDSDAAVSSKSQKFKAATRRRVPCPVDASHTVYEFDLAKHVLVCNRVKDADAMKKLAYYSHNINSGSHSSVKEEGS--TASSEEPAGDKENEHSEPSAQEQQGIIDKLVAIDFADLRKRIEAAYDSCVGELLLEKLQHKCCDQLF-EEKKKAGASKSVLRHIEQQASIIGHMEQAKLL-QDSNAAFVELGAGRGMLSLALAQMFPDSLYVLIDRAHTRGKADRFIGGDNKGDEGAKDTTLRAKIDIRHLNFAGM------QEILDKPVVCMSKHLCGVATDLSLRAVAQTLP------------------------------ESSGGKETSSEITVSSSFQG-LAIALCCHHVCAWEDYVNPSFFEAQGFKPQEFELLTSMTSWTT 407
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: A0A2P4X027_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X027_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.220e-52 Identity = 151/446 (33.86%), Postives = 223/446 (50.00%), Query Frame = 2
Query: 32 DSKDSKERARKEARLRRQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHM---EASPSLKKGK-------RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGSMDKSNGDG--GNGCANSE------SGAGETGENINLDEALVRDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNAN--------RARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWIS 1288
DSK E+ ++A+ +R RK + A G WDRC+++V K R+C R P S +C H+ + + S K K RVPCPVD +HTV+E L HV +CN V M++LPYYS +NSG+ GD G A + S + G L +D+ R++AA+ A VG+L+ E L L +++ + G RH+ QQASI+GHM K LL + + +VE+GAG+G L A++ P++ +I+R+ R KA+ + G G G+ + RA+IDIR LN AG+ E L R VV ++KHLCG ATDL+LRA+ TLP+ +P D + + F G +AIA CCHH C W DY F GF + +F+++ +++W +
Sbjct: 2 DSKRGAEQLSRDAQRKR--RKQAKAEAKDGGQWDRCMFKVVRKNRYCNISRVP-GSLFCGNHLPDSDVAVSKKSQKFKAATRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADTMKKLPYYSHNINSGTHCSDRGDNTTSEGIAEKDEKHSTPSAQEQQGIIDKLQAIDFKDLRERIDAAYAACVGELKLEKLHHKCCDQLF-EEKKKAGASKSVLRHIEQQASIIGHMEKVRLL-EDSNAAFVELGAGRGMLSLALAQMYPDSLYVLIDRAHTRGKADRFIGGDGKGDESAKESSMMLRAKIDIRHLNFAGMQ-----EVLNKR-VVCMSKHLCGVATDLSLRAIAQTLPELSNTQ-------------VVPLEDTPAAVSSSFQG---------------LAIALCCHHVCAWEDYVNPAFFLAHGFKAEEFELLTSMTSWTT 408
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: A0A3R7K0L9_9STRA (tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0L9_9STRA) HSP 1 Score: 199 bits (505), Expect = 1.380e-52 Identity = 151/441 (34.24%), Postives = 217/441 (49.21%), Query Frame = 2
Query: 80 RQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHM---EASPSLKKGK-------RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGS------------MDKSNGDGGNGCANS-ESGAGETGENINLDEALVR----DVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNAN----------RARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWIS 1288
R+ RK + A + G WDRC+++V K R+C R P S++C H+ +A+ S K K RVPCPVD +HTV+E L HV +CN V M+ LPYYS +NSGS + S+ + G NS E E + + LV D+ R++AA+ + VG+L E L L Q++ G RH+ QQASI+GHM + LL + + +VE+GAG+G L A++ P++ +I+R+ R KA+ + G G + RA+IDIR LN AG+ + +PVV ++KHLCG ATDL+LRA++ TLP L P D D E P I Y G+AIA CCHH C W DY F QGF +F+++ +++W +
Sbjct: 17 RKRRKQAKADAKEGGQWDRCMFKVVRKNRYCNISRVP-GSQFCGNHLPDNDAAISKKSQKFKAASRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADIMKRLPYYSHNINSGSHCTEKNSVEAPPSEVSDQENVGGKENSNEHSTPSAQEQQGIIDKLVSIDFADLRKRIDAAYESCVGELALEKLHHKCCDQL-LQEKKAAGASKSVLRHIEQQASIIGHMEQAELLEK-SNAAFVELGAGRGMLSLALAQMLPDSLYVLIDRAHTRGKADRFIGGDGKDDDKNQEKEEPTTLRAKIDIRHLNFAGM------REISHKPVVCMSKHLCGVATDLSLRAIVQTLPNP------------------LEPKSGDADSE-------PPSIST---YFQGLAIALCCHHVCAWEDYVNPAFFLTQGFKPQEFELLTSMTSWTT 420
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: A0A8K1FML3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FML3_PYTOL) HSP 1 Score: 197 bits (502), Expect = 3.960e-52 Identity = 141/437 (32.27%), Postives = 226/437 (51.72%), Query Frame = 2
Query: 80 RQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHMEA-----SPSLKKGK-----RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEE-LPYYSKGVNSGSMDKSNGDGGNGCANSESGAGET-----GENINLDEALV--------RDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAEN----KLDGTGGGNANRARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWISLEPEA 1303
R++RK ++ A K+G WDRC++R+ K RFC R + + +C H+ A S S ++ K RVPCP+D +HTV++ L H+K+CN R+AE + LPYYS+ +NSG+ + + S + +T G +++L+ D++ RVN+A+ VG + TE L AL ++ G RH+ QQASI+GHM + LL +++ ++E+GAG+G L A++ P++ +I+R+ R KA++ + T RA+IDIR LN+AG+ + L D P+V ++KHLCG ATDL+LRA+ T+P P PA + F G +A+A CCHHAC W DY+ F QGF++ +F +++ +++W + +A
Sbjct: 17 RKKRKQEKLAAMKSGEWDRCMFRIVRKNRFCNMERI-NGALFCGNHLPADAQVSSKSSQQFKAELRSRVPCPIDGSHTVYQYDLEKHLKVCNKT-RDAEAAKALPYYSENINSGTHAVTTREELKAAEVSIEASDDTEKEHDGPTAQQEQSLIDKLAALDFADLVKRVNSAYDTCVGSIPTEKLRHSCCDAL-LTEKTAAGASRAALRHIEQQASIIGHMERAKLLD--SKAAFLELGAGRGMLSLALAQTFPDSLYVLIDRAGSRGKADHFIRDNMSDTSAHKVMRAKIDIRHLNLAGM------KELVDMPIVGMSKHLCGVATDLSLRAIANTVPV-----------------PESHPAGV---ISPAFKG---------------IAVALCCHHACQWEDYSNPEFFLAQGFSAQEFPLLKGMTSWATCAMQA 407
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: G5AFJ3_PHYSP (tRNA:m(4)X modification enzyme TRM13 n=4 Tax=Phytophthora TaxID=4783 RepID=G5AFJ3_PHYSP) HSP 1 Score: 195 bits (495), Expect = 4.870e-51 Identity = 145/444 (32.66%), Postives = 217/444 (48.87%), Query Frame = 2
Query: 80 RQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHM---EASPSLKKGK-------RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGSMDKSNGDGGNGCANSESGAGETGENIN-------------------LDEALV---RDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNAN--------RARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWIS 1288
R+ RK + A G WDRC+++V K R+C R P S +C H+ +A+ S K K RVPCPVD +HTV+E L HV +CN V M++LPYYS +NSG S+ N A+S++ E + +D+ L D+ R++AA+ + VG+L E L L +++ + G RH+ QQ SI+GHM + LL + + +VE+GAG+G L A++ P++ +I+R+ R KA+ + G G G RA+IDIR LN AG+ E + ++P+V ++KHLCG ATDL+LRA+ TLP + E EG A + + F G +AIA CCHH C W DY F + QGF +F ++ +++W +
Sbjct: 16 RKRRKQAKAEAKDGGQWDRCMFKVVRKNRYCNIARVP-GSMFCGNHLPDSDAAVSKKSQKFKAATRRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADIMKKLPYYSHNINSGGTHCSD----NSAASSDTAEQEVAADKEKXXXXXEHSEPSAQEQQGIIDKLLAIDFADLRKRIDAAYESCVGELALEKLHHKCCDQLF-EEKKKAGASQSVLRHIEQQTSIIGHMEQVKLL-QDSNAAFVELGAGRGMLSLALAQMFPDSLYVLIDRAHTRGKADRFIGGEGKGEEAEKDSSTTLRAKIDIRHLNFAGM------EEILNKPIVCMSKHLCGVATDLSLRAIAQTLPDSKS---ESSEG-------------ASNSVSSSFQG---------------LAIALCCHHVCAWEDYVNPAFFQAQGFKPEEFQLLTSMTSWTT 415
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: A0A225W5E4_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5E4_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.070e-50 Identity = 143/432 (33.10%), Postives = 216/432 (50.00%), Query Frame = 2
Query: 74 LRRQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHM---EASPSLKKGK-------RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGS--MDKSNGDGGN-----GCANSESGAGETGENINLDEAL-VRDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTG--------GGNANRARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQKQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWIS 1288
++R+ RK + A G WDRC+++V K R+C R S +C H+ +AS S K K RVPCPVD +HTV+E L HV +CN V M++LPYYS +NSG+ DK+ +S A E I+ +A+ D+ R++ A+ A VG+L E L L +++ + G RH+ QQASI+GHM K LL + + +VE+GAG+G L A++ P++ +I+R+ R KA+ + G G RA+IDIR LN AG+ + + ++PVV ++KHLCG ATDL+LRA+ TLP+ + + ++ S + G+AIA CCHH C W DY F QGFT+ +F ++ +++W +
Sbjct: 14 VQRKRRKQAKAEAKDGGEWDRCMFKVVRKNRYCNISRVS-GSLFCGNHLPDSDASKSKKSQKFKAATRRRVPCPVDSSHTVYEYDLAKHVLVCNRVKDADTMKKLPYYSHNINSGTHCSDKTESSSTEEXXXXXXEHSAPSAQEQQGIIDKLQAIDFADLRKRIDTAYAACVGELTLEKLHHKCCDQLF-EEKKKAGASKSVLRHIEQQASIIGHMEKATLL-EDSNAAFVELGAGRGMLSLALAQMYPDSLYVLIDRAHTRGKADRFIGGDGKDDEAAKENSTTLRAKIDIRHLNFAGM------QEILNKPVVCMSKHLCGVATDLSLRAIAQTLPEPNINVVQSIDTSTSVSSSFQ-----------------------------GLAIALCCHHVCAWEDYVNPAFFLAQGFTAEEFVLLTSMTSWTT 407
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Match: D0N273_PHYIT (tRNA:m(4)X modification enzyme TRM13 n=13 Tax=Phytophthora TaxID=4783 RepID=D0N273_PHYIT) HSP 1 Score: 192 bits (488), Expect = 3.860e-50 Identity = 146/452 (32.30%), Postives = 219/452 (48.45%), Query Frame = 2
Query: 32 DSKDSKERARKEARLRRQERKDKQEIAFKTGVWDRCLYRVPGKQRFCAQYRSPHSSEYCATHM---EASPSLKKGK-------RVPCPVDPNHTVFEQLLGSHVKICNVVVREAEMEELPYYSKGVNSGSM------DKSNGDGGNGCANSESGAGETGENINLDEALV--------RDVISRVNAAHRAHVGDLRTEVLDSPHVQALHRQDQVEGGTGFRKRRHVLQQASIVGHMVKRGLLGPGTRSLYVEMGAGKGALGQAISVACPEADITMIERSAVRRKAENKLDGTGGGNAN----RARIDIRDLNMAGLPSLKKGEALEDRPVVVVAKHLCGAATDLALRALL-TLPQ----KQKVLEERVEGSAEDGDPYLPPADADEDMETLFGGGTPRVIGRQRDYTGGVAIATCCHHACNWRDYTGRRFLERQGFTSSDFDVMRRVSAWIS 1288
++K S E+ ++A+ +R RK + A G W+RC++RV K R+C R P S +C H+ +A S K K RVPCPVD +HTV+E L HV +CN V M++LPYYS +NSGS DK+ G G E G + + + ++ D+ R+ A+ + VG L E L L +++ + G RH+ QQASI+GHM K LL +++VE+GAG+G L A++ P++ +I+R+ R KA+ + G RA+IDIR LN AG+ + + +PVV ++KHLCG ATDL+LRA+ TLP+ K +L+ V S + G+AIA CCHH C W DY F GF +F+++ +++W +
Sbjct: 2 ETKRSAEQLSRDAQRKR--RKQAKAGAKDGGQWNRCMFRVVRKNRYCNISRVP-GSLFCGNHLPDYDAVVSKKSQKFKAAARRRVPCPVDASHTVYEYDLAKHVLVCNRVKDADAMKKLPYYSHNINSGSHCSSKEDDKAADVGEPGVEKDEDGNEHSAPSAQEQQGIIDKLQAVDFADLRKRIETAYASCVGALALEKLHHTCCDQLF-EEKKKAGASKSVLRHIEQQASIIGHMEKVNLL-ENPNAVFVELGAGRGMLSLALAQMYPDSLYVLIDRAHTRGKADRFIGGDEAAKERSSTLRAKIDIRHLNFAGM------QEIVSKPVVCMSKHLCGVATDLSLRAIAQTLPEPKSDKAILLDSTVSSSFQ-----------------------------------GLAIALCCHHVCAWEDYVNPEFFRAHGFKPEEFELLTSMTSWTT 407 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1429.3056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1429.3056.1 >prot_F-serratus_M_contig1429.3056.1 ID=prot_F-serratus_M_contig1429.3056.1|Name=mRNA_F-serratus_M_contig1429.3056.1|organism=Fucus serratus male|type=polypeptide|length=625bp MTAHNARDSKDSKERARKEARLRRQERKDKQEIAFKTGVWDRCLYRVPGKback to top mRNA from alignment at F-serratus_M_contig1429:95576..104716- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1429.3056.1 ID=mRNA_F-serratus_M_contig1429.3056.1|Name=mRNA_F-serratus_M_contig1429.3056.1|organism=Fucus serratus male|type=mRNA|length=9141bp|location=Sequence derived from alignment at F-serratus_M_contig1429:95576..104716- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1429:95576..104716- >mRNA_F-serratus_M_contig1429.3056.1 ID=mRNA_F-serratus_M_contig1429.3056.1|Name=mRNA_F-serratus_M_contig1429.3056.1|organism=Fucus serratus male|type=CDS|length=3750bp|location=Sequence derived from alignment at F-serratus_M_contig1429:95576..104716- (Fucus serratus male)back to top |