mRNA_F-serratus_M_contig1415.3000.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1415.3000.1
Unique NamemRNA_F-serratus_M_contig1415.3000.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1415.3000.1 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.330e-7
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:  625 RILPSFSRPSRAVVTFALYSTTVREDAADSPSSCSLVGPSKERRIYEVEALEHNTLQQVM-------------------EVMPSCLADRASDMERR 855
            RI  SFS PSRAVVTFALY +  +      P      G   E+R++EVEALEHNTLQQ+M                   + MP CL DR  +  R+
Sbjct:  305 RIFQSFSGPSRAVVTFALYRSAAKGKGLRLP------GHLPEKRLFEVEALEHNTLQQIMGGWIIKESKNLMTNEWDERQAMPPCLTDRIMEERRQ 394
[Close]
BLAST of mRNA_F-serratus_M_contig1415.3000.1 vs. uniprot
Match: A0A6H5KW97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW97_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.550e-6
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  637 SFSRPSRAVVTFALYSTTVREDAADSPSSCSLVGPSKERRIYEVEALEHNTLQQVM 804
            SFS PSRAVVTFALY +  +      P      G   E+R++EVEALEHNTLQQVM
Sbjct:    4 SFSGPSRAVVTFALYRSAAKGKGLRLP------GHLPEKRLFEVEALEHNTLQQVM 53
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1415.3000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU78_ECTSI2.330e-741.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW97_9PHAE1.550e-657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1415contigF-serratus_M_contig1415:68663..74284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size857
Cds size855
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1415.3000.1prot_F-serratus_M_contig1415.3000.1Fucus serratus malepolypeptideF-serratus_M_contig1415 68663..74282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.0199404-CDS-F-serratus_M_contig1415:68662..688091622929403.0199404-CDS-F-serratus_M_contig1415:68662..68809Fucus serratus maleCDSF-serratus_M_contig1415 68663..68809 +
1690962835.4625545-CDS-F-serratus_M_contig1415:68662..688091690962835.4625545-CDS-F-serratus_M_contig1415:68662..68809Fucus serratus maleCDSF-serratus_M_contig1415 68663..68809 +
1622929403.138327-CDS-F-serratus_M_contig1415:71814..720741622929403.138327-CDS-F-serratus_M_contig1415:71814..72074Fucus serratus maleCDSF-serratus_M_contig1415 71815..72074 +
1690962835.4734762-CDS-F-serratus_M_contig1415:71814..720741690962835.4734762-CDS-F-serratus_M_contig1415:71814..72074Fucus serratus maleCDSF-serratus_M_contig1415 71815..72074 +
1622929403.1512449-CDS-F-serratus_M_contig1415:72622..727071622929403.1512449-CDS-F-serratus_M_contig1415:72622..72707Fucus serratus maleCDSF-serratus_M_contig1415 72623..72707 +
1690962835.4884737-CDS-F-serratus_M_contig1415:72622..727071690962835.4884737-CDS-F-serratus_M_contig1415:72622..72707Fucus serratus maleCDSF-serratus_M_contig1415 72623..72707 +
1622929403.1635656-CDS-F-serratus_M_contig1415:72912..732251622929403.1635656-CDS-F-serratus_M_contig1415:72912..73225Fucus serratus maleCDSF-serratus_M_contig1415 72913..73225 +
1690962835.4990587-CDS-F-serratus_M_contig1415:72912..732251690962835.4990587-CDS-F-serratus_M_contig1415:72912..73225Fucus serratus maleCDSF-serratus_M_contig1415 72913..73225 +
1622929403.1870449-CDS-F-serratus_M_contig1415:74232..742821622929403.1870449-CDS-F-serratus_M_contig1415:74232..74282Fucus serratus maleCDSF-serratus_M_contig1415 74233..74282 +
1690962835.517872-CDS-F-serratus_M_contig1415:74232..742821690962835.517872-CDS-F-serratus_M_contig1415:74232..74282Fucus serratus maleCDSF-serratus_M_contig1415 74233..74282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1415.3000.1

>prot_F-serratus_M_contig1415.3000.1 ID=prot_F-serratus_M_contig1415.3000.1|Name=mRNA_F-serratus_M_contig1415.3000.1|organism=Fucus serratus male|type=polypeptide|length=285bp
DYRPQCQLTLGDEYHRYANAWRHKLGPDPMVILRFRWTSSRKAGRTGAPL
SDRIPLRKQRPTGIARGLVGGVEDMVEDFNINEHDLPLEPPDRSDPSTND
LDVYRYHVQRLFCAVPRMASLRGRMAEGSVPLKTVQVKRLLEANPKKRPF
GDAHLPKEINYASEPKLADETVHSTASNNPAAATAPKSSVGGTIAASGGS
GDVERHVGRILPSFSRPSRAVVTFALYSTTVREDAADSPSSCSLVGPSKE
RRIYEVEALEHNTLQQVMEVMPSCLADRASDMERR
back to top

mRNA from alignment at F-serratus_M_contig1415:68663..74284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1415.3000.1 ID=mRNA_F-serratus_M_contig1415.3000.1|Name=mRNA_F-serratus_M_contig1415.3000.1|organism=Fucus serratus male|type=mRNA|length=5622bp|location=Sequence derived from alignment at F-serratus_M_contig1415:68663..74284+ (Fucus serratus male)
GACTACCGACCCCAATGCCAGCTGACTCTCGGCGATGAATACCATCGGTA
CGCAAACGCGTGGCGTCATAAACTTGGGCCTGATCCGATGGTGATTTTAC
GGTTCAGATGGACATCGTCGCGGAAAGCGGGACGGACTGGAGCTCCGGTG
AGTAAGCACCAGATTCAACCTGGTCGTGGAGAATGAGCGGGTTGACGCGG
ACATGTATCGCGAGACCAAATCATCAGGCGCGAGCGGGGCTAGGGAAAAA
TTATTTCCCTGTTTAGCTGGCGACGAGAAAAAAGAATCGGCAACGTTACC
CGAATGCTACCCTACCTGCAAAAAGTGACTACCACATACTATACATAAGA
CAGCAGTAGTATTTCACCTGTTGGAAGAGAGAGAGACACATTACTCTATG
ATATAATATACTTGGTACGAGTACAGCCCGAGACGCCATCGCGAGTAAAA
TGACCACGTTTGTACCGTCCTATCTTGAACATTTATCTCGTGGACCCCGT
TTCAATTCGGCCACCTTTTGAACGCGTACAAGTGTACTGCTGCATCCCCT
TGCCCGAAAGCACCGATATGTCTCACTGGAGTTGTAATGTCTGGTGACTA
TTACTATGATATGGTAGAGATAGAAGAGATAAGGTAGAGTAGAGAGACCT
GCCATACCCGTTCAAGGTACAACCACCCGTTCTACCCGGTAAGAACAAGC
AGTTTCGCATCAGACCTGTATCCAAGCTCTATTAATCGATCCCGCACAGT
AGGTATTATAATGATCAGGGTAAAACCAAAGGTATTGAGAATGTCGAGCA
CAACTTACACAGGTATACAGTATTACCTGTAGAAGTTATGACGAGACAGT
ACGGCGTGCGGCAAACCGAAGTACTGCAACTATTAATAAGTGTATCAATA
TCTTCCACGAGAAAGTATTCTACTCCCTTCTAGTTTACTATTAGTATTCT
ATCTTGGGGACCTGATCACAAAAGTAGTAATACATACATACATACATAGT
GGTCTAGCCCAGTAGGTAGCCTGCACACCTGCTAGTGCGGAAGTCGTGAG
CTCGATTCTTTGCAAAGCAGGATTTTTATTCTGCCTTCCGTAGCGGAAAG
CGCGAGAACGTGAGTAAGTAAAACCCCACCATTGATTGGTTGACGAGATG
TAAGACTGCTGAGCTTGCATCGCGATAAAAATTCGTAAGACGAGCACCGG
GGAGAGATGAGAAGATCCTTAGTGACTACAGGCAGGATGGCAACGTTGCA
GTACCAGTAGGTGGGATTGGCAACCTAGCACGTTGAGGCCCATCGGCCAT
ACTAATAGTGACATACGCAAAAAAAACATACTACACAGCTACACGCGTAC
AGCGACACACATACACACAAGTTTCGGGGCAGCAACCCAAGCCGAAACGT
TTTCAAGTGTGTGCCGTGTGTTGTGTTTTCTTGCCGTTTATTCTGGACAT
CAAGTTCGTTGGTCGTACCAGCCGGGGTCACACAGGAGGAAGGTCCACAG
GATCTCTCATCCGCCTTCTTTCTGTGGTGCGTGCCTTTATTTTTCTCGCG
AGAAGGATTCAGCCATCCCTTTCCCTCGTTGACCGCGAAGTCGAATTTTG
TGTCTGTGTATCACGCGTGCCCATTACAATGATTGGTCCAACAGTGGCTG
TAGGAAAAGAGAGGCGCACAATGATTGGTCCATGGCGACACCCGAAAAGG
CAGCACATTTGGTATCGGAGGCGTTGAATCGAGCATTGTGTCCAGCGCTT
GAGTCAAAATAACCAATGAGAGAAACACGAAATCCTTGGCACTTAGCAGC
ACTTTAACTGATAGCGACAGGTCTTAGCCCTCGCGCCGAACCTAGGAGCT
TTTTGGCGTCCTTGTTGCCCTACGGCCAAATGCTGATGATTTTCTATACT
GTAGTATAGCGTTATTGATTGATTGCTTTTTGTTTTATTGACATGGTGGC
ATTTTACACATACAGAGTACATCATACAAACACACGAAAAGTGTCATTAC
TTCAGTTCACAAGCTGTAAGGCCAACCTTTATGGGAAACGAAAAAACAGA
AACGCAAAATACAGAAATTTGTCATTTCTGTGGCCAAAAATCCGTGGGGA
AAAACTGTAGTTGGTCGTTTATGGGATAAAGGAAAAATACAAAAAAAAAC
GGGGAGCATATCGGGTTAACCCCGGCATTTTCGGCCACCCATCACGCACA
AAGACAGGTGCAAGTATGTACACAGGGCGAGTATGGATCAACTGGGTAAG
GTTGCCAGTCCTGCTCGTGGTCAACTGAACAGGGAAAAATAATATTTCCC
TCTCCGCGTTTGTGCCCGAGAATTTAGTCCGGCGAGACAGGGTCGTTTAG
TATTTAATTACGAGTACATCGCAAATAGAGTGGGCAGAGCGACATCGTTT
CGATGGCGAGCCGTCGGACGCTCGTGACACGCAGTCCGTCCCTGCCTCAT
CTCCGGCGCCACCCATTCAACCGCCCCCGCCGCCGGCGATCAGCTTGTCC
AGACCCATCACCTCTACAGCTTTTATAAATTTCCTCCAGATCTGCTTGCC
CGGGCCCATCACCTCAACAGATTCTATAAATTTCCTCCAAATCTGCTGCT
CCGGCGATCATCGCACAACTGCTGCTGCTCAGCACCCATCGTACAACAGC
ACTCGCGAGCTCCTCTTTGCCGATATTTGATAGGAGGGATGCTATAGTCC
CGACCTCCCAATCGTTCTTGGAAGGCGTGAATCATTTCTGCGGCAAACTA
AACTTGTCGAGCCATATACTGAAATGAGGCTCATTTCTGTATGTGGGAAG
AGAAAAATAACCTCCCACAGAAATTCGCCATTTCTGTAGGGCTACATTTC
TGCGGCACGGGGCCCATAGCGCCACGTTTACAAAAATTTCGCCACAGAAA
TTTTACATTTCTGTATTTTCATGTCGTTTCTGTTTCCCGTAAAGGTTGGC
CTAACGGCCGATTTTCTACGGTTTCAATTAGTCTCGGTCACAGCGTGTCT
CCAGTGCGGCGGTCTCCATCTCTGTCGTTCTTTTAAAATCTACTAAAAAT
AAAGACAAAGGGTCGGGTGTCATCTCAGCTGCCCCTTCCCCCCCCCCTCC
CCTCCCGCCATTTTAACTGCCGTCTATACAAACGCCTCCTTTCGTTTCAA
AGCTTAGCGACCGGATCCCGCTGAGAAAACAAAGACCGACAGGCATCGCC
CGCGGGCTGGTGGGAGGAGTCGAGGACATGGTGGAGGACTTCAATATCAA
CGAGCACGATCTTCCGCTCGAGCCCCCCGACCGGTCGGACCCCTCCACGA
ACGACCTCGACGTTTATCGTTACCATGTCCAGCGACTGTTTTGCGCGGTG
CCGAGGATGGCGTCGCTCAGAGGCAGGATGGCGGAAGGTTCGGTGCCGCT
AAAGACCGTGCAGTGAGTGCCAAGGCGCCTTTGGTCGCTTCTTGACGCGG
GAGCGGTTGTGTGCTCGAAACCAGAGGGATTTCGAAGATTTGAGTGGGGG
ATGAGATTATTTATCGGCCGCGATTTTCTGCACACCGCCCGCCTGCGAAA
GATTACCACGTTCCGTAGATATCCGTAAACGTCCCCGCATTCGGGATGGA
ACTTGCCGGGAAACATGAGTACCGTGCGCGCGAGACAACTCCCTCACTTC
GGCAAGACAGCATGCCTGGTTGTTGGAAAGGCGAAGGGCGAATATACTTC
CTCCATTCCATCGTCCCTCCACCTTCGAGCTGTTTCCCACGTTCCAACTG
TTTCCACATCGAATACACCCGAGCGCTCGCCCGCTGCTGCCCCACAGCTG
CTCACATCAGCAGCAATCACGTCAGGGTCTGCGGGGGAAACGACCGTACG
TATCTTAAGTCATCTTCGTGCGCTATAGCGCCCATTTCTTCCGCCCGTTT
TATCTCCCTTGGCGTGCTGATCCGCTGCGTGGTGTGCACGCTCATCTCGC
CGGTGACCAGGGTGAAGCGGCTCCTCGAAGCAAACCCAAAAAAGCGTCCG
TTCGGGGATGCTCACTTGCCCAAGGAGATTAATTATGCTTCCGAGGTAAG
GATCAATGTGCCGTACATCGAAACTGATGAAGGAAAAGCTTGTTTTTTTG
CCGATATTGCAGGCGCATCGGTTGCTAGCGTGACAAATGTCTGCGCTCAA
GGGGTTTCATACACCAATAGGCCATATCCAACGTATACATCTCGGCATAT
AACGGAGTGAATGATCCGTGTGTTGACCTGTGCATATCCCGCATAAACAG
CCCAAGTTAGCCGACGAAACCGTCCACTCCACCGCGTCCAACAACCCTGC
GGCAGCGACGGCGCCTAAATCATCGGTCGGTGGGACCATCGCGGCTTCAG
GAGGATCGGGGGATGTGGAGAGGCACGTGGGACGGATTTTGCCATCGTTT
TCGCGGCCCAGTCGAGCGGTGGTGACCTTCGCGCTGTACAGTACGACAGT
CAGGGAGGACGCCGCCGACTCCCCGTCCTCTTGCTCCCTCGTGGGCCCCT
CGAAGGAGAGGCGGATATACGAGGTGGAGGCGCTCGAGCACAACACGCTG
CAGCAGGTCATGGGTGAGTTAGACCCGCCTCCGTATGCCCCTGCCTTACG
CCTTCTCGAGGTCAAGGTTCATTTCCGCCTCGTGAAGAGAGTAGCGTGTG
TGTCGCCTTTGCCGCGAGCGAGCGTACGCACCAGTCTGTGCGTGTGCGGT
TCGACTCCGGCAGTTCAAGAAGGGTTGGGTGGCAGGAAAGGCGCAGCGAC
AACAACGGCCCTGTGTTTTGCGTCGCTTGCGTTGCTAAATAATCTCTCTT
AGCTGTCGGAAAACGTTCAAGGTGTTCTAGGATATCTAACACTTCTTTAG
AACGCTTGGTCTAGTGTTTCTTAAAATGCCTTCCGCGGCGAAGGAACTCT
CACCGACTCTCGGCTTACGTTGGTTTCAGCCAAGAGAGGGGGGGATTCCG
ACGGTAGCCGCTATAGCGGCGTGCAATTTAACTACCGCCTCCAGAATATT
CGCCGGCAGCGTCCCCTTTTTGGTATTATTTTATAATTTACAAACAAAAC
AATACAACTGTTTTATAGTCACAGCGTAGTAGAATAGTCGGTAATCGCTT
CTGATATATAAGAAGTCTCGTTGTTCAACCCCCAGTGTCGAGTACATTTT
TTATCCTTGGTCTAGCGATAGCGTTAGAATTTTTTATTTTTCGCAGACGG
GACATGAATGGACCCAGCCATGAATTGGGACCTCGCAGTCAGCTGGGGTA
GGGGGGTCTGGGTTAGGGTTAGCGATAGCATGTGTTTCAAAAAGAGTTTC
TGAAGGTGTGGTTCTGGAGGCGGTAGTTAAACTGCACGCCGCTATTTGCA
GTTTTAAACTGCAAATAGCGGCTACCGATTCCGACACACTGCGTATACCA
CCGACTACTAGACCTACCCGGCAGAGTAGCAGGCCGTCGCTTCCATGCGG
TGGGAACACGAATAGGTTATAGTGCGGTAAGGATAGCGATGCAAGACGCT
AATGCCCAATGGGGCTCCCGCGGGCCGCGTTTACCCTGCTCCACCTTGTC
GACTTCGACTCTTCTCGCAGAGGTCATGCCATCGTGCCTGGCTGACAGAG
CATCGGACATGGAACGAAGGAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1415:68663..74284+

>mRNA_F-serratus_M_contig1415.3000.1 ID=mRNA_F-serratus_M_contig1415.3000.1|Name=mRNA_F-serratus_M_contig1415.3000.1|organism=Fucus serratus male|type=CDS|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig1415:68663..74284+ (Fucus serratus male)
GACTACCGACCCCAATGCCAGCTGACTCTCGGCGATGAATACCATCGGTA
CGCAAACGCGTGGCGTCATAAACTTGGGCCTGATCCGATGGTGATTTTAC
GGTTCAGATGGACATCGTCGCGGAAAGCGGGACGGACTGGAGCTCCGGAC
TACCGACCCCAATGCCAGCTGACTCTCGGCGATGAATACCATCGGTACGC
AAACGCGTGGCGTCATAAACTTGGGCCTGATCCGATGGTGATTTTACGGT
TCAGATGGACATCGTCGCGGAAAGCGGGACGGACTGGAGCTCCGCTTAGC
GACCGGATCCCGCTGAGAAAACAAAGACCGACAGGCATCGCCCGCGGGCT
GGTGGGAGGAGTCGAGGACATGGTGGAGGACTTCAATATCAACGAGCACG
ATCTTCCGCTCGAGCCCCCCGACCGGTCGGACCCCTCCACGAACGACCTC
GACGTTTATCGTTACCATGTCCAGCGACTGTTTTGCGCGGTGCCGAGGAT
GGCGTCGCTCAGAGGCAGGATGGCGGAAGGTTCGGTGCCGCTAAAGACCG
TGCACTTAGCGACCGGATCCCGCTGAGAAAACAAAGACCGACAGGCATCG
CCCGCGGGCTGGTGGGAGGAGTCGAGGACATGGTGGAGGACTTCAATATC
AACGAGCACGATCTTCCGCTCGAGCCCCCCGACCGGTCGGACCCCTCCAC
GAACGACCTCGACGTTTATCGTTACCATGTCCAGCGACTGTTTTGCGCGG
TGCCGAGGATGGCGTCGCTCAGAGGCAGGATGGCGGAAGGTTCGGTGCCG
CTAAAGACCGTGCAGGTGAAGCGGCTCCTCGAAGCAAACCCAAAAAAGCG
TCCGTTCGGGGATGCTCACTTGCCCAAGGAGATTAATTATGCTTCCGAGG
GTGAAGCGGCTCCTCGAAGCAAACCCAAAAAAGCGTCCGTTCGGGGATGC
TCACTTGCCCAAGGAGATTAATTATGCTTCCGAGCCCAAGTTAGCCGACG
AAACCGTCCACTCCACCGCGTCCAACAACCCTGCGGCAGCGACGGCGCCT
AAATCATCGGTCGGTGGGACCATCGCGGCTTCAGGAGGATCGGGGGATGT
GGAGAGGCACGTGGGACGGATTTTGCCATCGTTTTCGCGGCCCAGTCGAG
CGGTGGTGACCTTCGCGCTGTACAGTACGACAGTCAGGGAGGACGCCGCC
GACTCCCCGTCCTCTTGCTCCCTCGTGGGCCCCTCGAAGGAGAGGCGGAT
ATACGAGGTGGAGGCGCTCGAGCACAACACGCTGCAGCAGGTCATGGCCC
AAGTTAGCCGACGAAACCGTCCACTCCACCGCGTCCAACAACCCTGCGGC
AGCGACGGCGCCTAAATCATCGGTCGGTGGGACCATCGCGGCTTCAGGAG
GATCGGGGGATGTGGAGAGGCACGTGGGACGGATTTTGCCATCGTTTTCG
CGGCCCAGTCGAGCGGTGGTGACCTTCGCGCTGTACAGTACGACAGTCAG
GGAGGACGCCGCCGACTCCCCGTCCTCTTGCTCCCTCGTGGGCCCCTCGA
AGGAGAGGCGGATATACGAGGTGGAGGCGCTCGAGCACAACACGCTGCAG
CAGGTCATGGAGGTCATGCCATCGTGCCTGGCTGACAGAGCATCGGACAT
GGAACGAAGGAGGTCATGCCATCGTGCCTGGCTGACAGAGCATCGGACAT
GGAACGAAGG
back to top