mRNA_F-serratus_M_contig14.2889.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2889.1
Unique NamemRNA_F-serratus_M_contig14.2889.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:574193..574776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size574
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2889.1prot_F-serratus_M_contig14.2889.1Fucus serratus malepolypeptideF-serratus_M_contig14 574351..574650 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.9766388-UTR-F-serratus_M_contig14:574192..5743051622929378.9766388-UTR-F-serratus_M_contig14:574192..574305Fucus serratus maleUTRF-serratus_M_contig14 574193..574305 -
1690962824.8179371-UTR-F-serratus_M_contig14:574192..5743051690962824.8179371-UTR-F-serratus_M_contig14:574192..574305Fucus serratus maleUTRF-serratus_M_contig14 574193..574305 -
1622929378.9939544-UTR-F-serratus_M_contig14:574315..5743501622929378.9939544-UTR-F-serratus_M_contig14:574315..574350Fucus serratus maleUTRF-serratus_M_contig14 574316..574350 -
1690962824.826639-UTR-F-serratus_M_contig14:574315..5743501690962824.826639-UTR-F-serratus_M_contig14:574315..574350Fucus serratus maleUTRF-serratus_M_contig14 574316..574350 -
1622929379.023068-UTR-F-serratus_M_contig14:574650..5747761622929379.023068-UTR-F-serratus_M_contig14:574650..574776Fucus serratus maleUTRF-serratus_M_contig14 574651..574776 -
1690962824.8433843-UTR-F-serratus_M_contig14:574650..5747761690962824.8433843-UTR-F-serratus_M_contig14:574650..574776Fucus serratus maleUTRF-serratus_M_contig14 574651..574776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.0065336-CDS-F-serratus_M_contig14:574350..5746501622929379.0065336-CDS-F-serratus_M_contig14:574350..574650Fucus serratus maleCDSF-serratus_M_contig14 574351..574650 -
1690962824.8347816-CDS-F-serratus_M_contig14:574350..5746501690962824.8347816-CDS-F-serratus_M_contig14:574350..574650Fucus serratus maleCDSF-serratus_M_contig14 574351..574650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2889.1

>prot_F-serratus_M_contig14.2889.1 ID=prot_F-serratus_M_contig14.2889.1|Name=mRNA_F-serratus_M_contig14.2889.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MCDDSLLNARTGEGGSGSTREFRWQEHKGVGLAASKAKHACSINTTFLLV
KSRLPHSLGIYLSHRFLSFFFFSETSGQFYVIFGNLGGRSCLDSYLLII*
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mRNA from alignment at F-serratus_M_contig14:574193..574776-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2889.1 ID=mRNA_F-serratus_M_contig14.2889.1|Name=mRNA_F-serratus_M_contig14.2889.1|organism=Fucus serratus male|type=mRNA|length=584bp|location=Sequence derived from alignment at F-serratus_M_contig14:574193..574776- (Fucus serratus male)
CAATACTACGTACAGTGTTGAACAATATTTGTTCCATCTCTTGAATCATT
AAGGGTCAAAAATATGCGCCGTTTGTACCCGTGTCAGAGGAAAAAGCTCG
AGAGATGTATCTAACCTCTTTTTGCGATGTGTGACGATTCCTTACTGAAT
GCCAGGACTGGTGAAGGTGGAAGTGGAAGTACAAGGGAGTTTAGATGGCA
GGAGCACAAAGGAGTTGGATTGGCGGCCTCAAAAGCGAAGCATGCGTGTT
CCATTAATACTACTTTTCTGTTGGTTAAGAGTCGTCTTCCGCACTCGTTG
GGTATATATCTATCTCACCGTTTTCTTTCATTCTTTTTTTTTTCGGAGAC
CTCTGGACAGTTTTACGTAATATTCGGTAATCTGGGCGGGCGTTCTTGTC
TCGACAGTTATCTCTTGATTATATGATACTCCGGAGTAGATATCTTGCAC
GTGAGAAATCGGTCGAGCCAGTTAGCTGAGCTGGGGCCTAACCATGCTGC
TGCTGTTGTAAAGTCTTTATATGTGTACGTAATGACGTTGCCTGACTGCG
AGTTTTTGTTACTATGTACTAATTGAGGTACTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:574193..574776-

>mRNA_F-serratus_M_contig14.2889.1 ID=mRNA_F-serratus_M_contig14.2889.1|Name=mRNA_F-serratus_M_contig14.2889.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig14:574193..574776- (Fucus serratus male)
ATGTGTGACGATTCCTTACTGAATGCCAGGACTGGTGAAGGTGGAAGTGG
AAGTACAAGGGAGTTTAGATGGCAGGAGCACAAAGGAGTTGGATTGGCGG
CCTCAAAAGCGAAGCATGCGTGTTCCATTAATACTACTTTTCTGTTGGTT
AAGAGTCGTCTTCCGCACTCGTTGGGTATATATCTATCTCACCGTTTTCT
TTCATTCTTTTTTTTTTCGGAGACCTCTGGACAGTTTTACGTAATATTCG
GTAATCTGGGCGGGCGTTCTTGTCTCGACAGTTATCTCTTGATTATATGA
ATGTGTGACGATTCCTTACTGAATGCCAGGACTGGTGAAGGTGGAAGTGG
AAGTACAAGGGAGTTTAGATGGCAGGAGCACAAAGGAGTTGGATTGGCGG
CCTCAAAAGCGAAGCATGCGTGTTCCATTAATACTACTTTTCTGTTGGTT
AAGAGTCGTCTTCCGCACTCGTTGGGTATATATCTATCTCACCGTTTTCT
TTCATTCTTTTTTTTTTCGGAGACCTCTGGACAGTTTTACGTAATATTCG
GTAATCTGGGCGGGCGTTCTTGTCTCGACAGTTATCTCTTGATTATATGA
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