mRNA_F-serratus_M_contig14.2888.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2888.1
Unique NamemRNA_F-serratus_M_contig14.2888.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:545605..548313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.6328108-CDS-F-serratus_M_contig14:545604..5456961622929378.6328108-CDS-F-serratus_M_contig14:545604..545696Fucus serratus maleCDSF-serratus_M_contig14 545605..545696 +
1690962824.6581163-CDS-F-serratus_M_contig14:545604..5456961690962824.6581163-CDS-F-serratus_M_contig14:545604..545696Fucus serratus maleCDSF-serratus_M_contig14 545605..545696 +
1622929378.647608-CDS-F-serratus_M_contig14:548014..5483121622929378.647608-CDS-F-serratus_M_contig14:548014..548312Fucus serratus maleCDSF-serratus_M_contig14 548015..548312 +
1690962824.6686232-CDS-F-serratus_M_contig14:548014..5483121690962824.6686232-CDS-F-serratus_M_contig14:548014..548312Fucus serratus maleCDSF-serratus_M_contig14 548015..548312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2888.1prot_F-serratus_M_contig14.2888.1Fucus serratus malepolypeptideF-serratus_M_contig14 545605..548312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2888.1

>prot_F-serratus_M_contig14.2888.1 ID=prot_F-serratus_M_contig14.2888.1|Name=mRNA_F-serratus_M_contig14.2888.1|organism=Fucus serratus male|type=polypeptide|length=130bp
VDDNYVAIQKALEIDGRAFLEMSETFDEERRESIRDQLHYQKSSTSFAPQ
RGLAPFLSRDPISWDDGLTLLRRPQQMSSFEPWSIRGRQESALRQASIIR
DRSARHQASLARRRVNRGSRARFSVRRRGR
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mRNA from alignment at F-serratus_M_contig14:545605..548313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2888.1 ID=mRNA_F-serratus_M_contig14.2888.1|Name=mRNA_F-serratus_M_contig14.2888.1|organism=Fucus serratus male|type=mRNA|length=2709bp|location=Sequence derived from alignment at F-serratus_M_contig14:545605..548313+ (Fucus serratus male)
GTGGACGACAATTATGTGGCGATACAGAAGGCCCTAGAGATAGACGGCCG
GGCCTTCCTAGAGATGAGCGAAACGTTCGACGAGGAGAGGAGGTACGATG
TGTTCCATACCACTACAGTGTACCATACAGTAATAGACAGAAATCGTTTT
CACTGAACCTGATGGTAGATGTTTGTTCGTTGAGTAGTAAGTACTGTTCG
ATATAAATATATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTA
AGCACCAGATTCAGCCTTAGTATGGAGAGGAGCAGGCTGACGCGGGACGG
AATTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGAACGCGGAC
AGGGGAATATTCATTTTCTCTGTTCAGCTGACTACGAGCAGGATTGGCAA
CCTTACCCGGTTGATCCAAACTCTTGCTATATACTCGTACGAAGTATGTG
TGACCGTACTGTTATACGATTAATACGTCTGCGTACAGGCGTACATGTAA
GGTGTTATTGATTTTGTTGTTGTTGTTTTCTTCACATTAACCGATCGGGC
CTCAACCATACCCAGTAATTTACGTGGTTGCCAATCCGATACGTGGTCTG
CTGGACAGAAAAAGATCAGAGGAACATGTACACAGCTATAACGAGAACAA
ACAGACAAAACACAAACGACAAAAAGAAAAGGAACGATGACCAAATAAAC
ATACCAGAGAAAGAAAGCAGAAGGGCACTCGATGGAAAAAGTTTGGTATA
CTGCCAGCCGCGAGCCATCTGATACCCTCCCCGAATCGCAACCATGCACC
CAACCGCGTAGCATCTACCGCACTCCGTACTCTTGAGAGGTTTCGGTTTT
CTCTAACGGCACAGTCGACGTCGCTTAGGTAGTCCTTCGGTTGGTCCAAT
CAACGCGGCCCGAAAACGTCTCAATGTGCAGGGAGGATGATATCGGTGCT
GTGAATGAGAATTCAGTTGGTTTGTGACGGCCAATATGTGTAACTGATTA
TGTGTAGGAATTGTAGTAACTGTGTGTTCTAAGTCGACGGCAGTATGTGT
ATGATATATTGATTAGGACGACAGTAATGTGTTGTTGATTATGACGATGC
TATGATATGTACGAAGTACTCAGTATAATTTATGGATGGCTTGAATGTGT
TGGTTGTATTTCGACGACAGTATGTGTACGTATGTATGGTCACACGTCAA
CCGGTTGAGGTTGCCAACCGTGCTCGTGGTCAGCTGAACAGAGAAAATGA
ATATTTCCCTGTCCGTGTTGATGCCTGAGAATTTGTTCTCGCGACACGGG
TTCGGCAGTCCCGTCCCTCGTCAGCCTGCTCATCTCCATACTCAGGCTGA
ATCTGGCGCCTTACGGGATTCCTCCCGAGTTCCGCGTCGGCGTCCATTCA
TTCATGTATCATCGCCATACGCCATCGGGTCAGTCCCGAGTTTATCAGTC
ACGCTGTTGTGTACCGATGGCGTTCACTGCCGAGAGTCCGTCGGCACAGG
ACCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCAC
CATGGACCAATTAATGTTCGCCTCTCTTTCCCAAACACACTAATGGTATG
AAGTGGTTATAGCATGTTAAAATTACCGGCAATAACAATGTGCTATTGAC
TATGACGTTGCTATGTATTATTATTGATAGAAACAGTAATGTGTAGTGTA
CATGGTCGATAGGCTTTTGTATAGTGATATAGTGAAGGGAAAGACATTCA
AACCTCGTCCATACCACAGTTTATAGACTACATCTTGCTCTTTCTGCAGG
TACTTTTATAGTTCCCAACAGGGTTCGATTTCAACCCGCGATCACCGCAG
CGCATTCGCTACACACGGCATACATTATTGCATACGTTATTGCATCAATA
CATTTAACTCATTAATAAGAGTGTACACAAAGCTTAAGTACTCGTCACTA
CATTTCGAGCCATGTTGTGAAATTGTGCGGTAGGTAAAAATTTTAATTCG
CTACATTCCATATAGGACTAAATCTCCATTTTGTATAGTATAAAATAGTA
GCATGCGGTCGGTCATGCGGTCGGTCTCCACACGCGCGGAACGAATCAGT
CCCTTGAGTTGTGGGCTGCATGGACCGGTTCATCGCCGGACCCTTACCTT
TCGCCATGGCACCGTCTTAGCCGCCGCGTGCGCCCGACGTGGAGATATTC
GGAAGGGCGGACACGTTTTTTCACCGGCTTGCGGTTCGCCACAAAACCTA
CTTTCTTCCATATAAAACTCGGACGCTAACCACGCCCCCCCCCCCCTCCC
CCAACATTTCTCTTCACCCATTTATCGTTGGTAAATCTCCCCATCTCCTA
TCCCCACTCCCCTCTCTCCCTCCCCCACCCACCATCCCCTATCCCCCCAT
CCCCTCCCAGGGAAAGCATCCGTGACCAACTGCACTACCAAAAATCATCG
ACCTCTTTTGCTCCACAGCGCGGTCTAGCCCCCTTCCTCAGTCGCGATCC
CATCTCCTGGGACGACGGTTTGACGCTGCTCCGGCGGCCGCAGCAGATGT
CGTCATTCGAGCCCTGGAGCATCCGCGGTCGCCAAGAGTCCGCGCTGAGG
CAAGCCTCCATCATACGCGACAGGTCGGCGCGGCATCAGGCGTCGCTCGC
GAGGAGGCGCGTGAATCGTGGGAGTCGCGCGAGGTTTAGCGTTAGGCGCA
GAGGCAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:545605..548313+

>mRNA_F-serratus_M_contig14.2888.1 ID=mRNA_F-serratus_M_contig14.2888.1|Name=mRNA_F-serratus_M_contig14.2888.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig14:545605..548313+ (Fucus serratus male)
GTGGACGACAATTATGTGGCGATACAGAAGGCCCTAGAGATAGACGGCCG
GGCCTTCCTAGAGATGAGCGAAACGTTCGACGAGGAGAGGAGGTGGACGA
CAATTATGTGGCGATACAGAAGGCCCTAGAGATAGACGGCCGGGCCTTCC
TAGAGATGAGCGAAACGTTCGACGAGGAGAGGAGGGAAAGCATCCGTGAC
CAACTGCACTACCAAAAATCATCGACCTCTTTTGCTCCACAGCGCGGTCT
AGCCCCCTTCCTCAGTCGCGATCCCATCTCCTGGGACGACGGTTTGACGC
TGCTCCGGCGGCCGCAGCAGATGTCGTCATTCGAGCCCTGGAGCATCCGC
GGTCGCCAAGAGTCCGCGCTGAGGCAAGCCTCCATCATACGCGACAGGTC
GGCGCGGCATCAGGCGTCGCTCGCGAGGAGGCGCGTGAATCGTGGGAGTC
GCGCGAGGTTTAGCGTTAGGCGCAGAGGCAGAGGAAAGCATCCGTGACCA
ACTGCACTACCAAAAATCATCGACCTCTTTTGCTCCACAGCGCGGTCTAG
CCCCCTTCCTCAGTCGCGATCCCATCTCCTGGGACGACGGTTTGACGCTG
CTCCGGCGGCCGCAGCAGATGTCGTCATTCGAGCCCTGGAGCATCCGCGG
TCGCCAAGAGTCCGCGCTGAGGCAAGCCTCCATCATACGCGACAGGTCGG
CGCGGCATCAGGCGTCGCTCGCGAGGAGGCGCGTGAATCGTGGGAGTCGC
GCGAGGTTTAGCGTTAGGCGCAGAGGCAGA
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