mRNA_F-serratus_M_contig14.2873.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2873.1
Unique NamemRNA_F-serratus_M_contig14.2873.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2873.1 vs. uniprot
Match: D8LCH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH2_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.360e-41
Identity = 77/139 (55.40%), Postives = 104/139 (74.82%), Query Frame = 2 
Query:   50 MEDRSLQLPSVEPLLKLPTSAIVQFVSNKNEAQLLLDIGELAHEFDHLMSYLSQWLEHQEYL------KDDYQRAAGMRALQMSSLAPLTYQARLVNLHGVKVLQSRITTCLQKLQRHMEMIQIFANQNTSFASELRLC 448
            ME+R+L+LP  EPLL +P SAIV+FVSN++EA++LL IG+L HEFDHL   L QWLEH+++L      +++ Q         + SL PL +QAR+VN HGV+VLQ +IT CLQ+LQR+M+ +Q+FANQN SF+ ELRLC
Sbjct:    1 MENRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPVEDSGESLVLSLVPLAHQARVVNRHGVRVLQEKITECLQQLQRYMDAVQVFANQNASFSQELRLC 139
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BLAST of mRNA_F-serratus_M_contig14.2873.1 vs. uniprot
Match: A0A6H5JFN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.920e-38
Identity = 80/160 (50.00%), Postives = 107/160 (66.88%), Query Frame = 2 
Query:   29 FVLPK*IMEDRSLQLPSVEPLLKLPTSAIVQFVSNKNEAQLLLDIGELAHEFDHLMSYLSQWLEHQEYL------KDDYQRAAGMRALQMSSLAPLTYQARLVNLHGVKVLQSRITTCLQKLQRHM--------------EMIQIFANQNTSFASELRLC 448
            F  P   MEDR+L+LP  EPLL +P SAIV+FVSN++EA++LL IG+L HEFDHL   L QWLEH+++L      +++ Q A       + SL PL +QAR+VN HGV+VLQ +IT CLQ+LQR+M              + +Q+FA+QN SF+ ELRLC
Sbjct:   14 FASPIWNMEDRALRLPRAEPLLHVPVSAIVEFVSNRSEAEVLLRIGDLGHEFDHLTRTLVQWLEHEQHLTADGCLQEEQQPAEDTGESLVLSLVPLAHQARVVNRHGVRVLQQKITECLQQLQRYMVGVVQGDGFGKWTMDAVQVFADQNASFSQELRLC 173
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH2_ECTSI1.360e-4155.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFN0_9PHAE4.920e-3850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:102179..104073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size450
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2873.1prot_F-serratus_M_contig14.2873.1Fucus serratus malepolypeptideF-serratus_M_contig14 102228..104073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.8076751-UTR-F-serratus_M_contig14:102178..1022271622929380.8076751-UTR-F-serratus_M_contig14:102178..102227Fucus serratus maleUTRF-serratus_M_contig14 102179..102227 +
1690962825.3577738-UTR-F-serratus_M_contig14:102178..1022271690962825.3577738-UTR-F-serratus_M_contig14:102178..102227Fucus serratus maleUTRF-serratus_M_contig14 102179..102227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.8193185-CDS-F-serratus_M_contig14:102227..1023201622929380.8193185-CDS-F-serratus_M_contig14:102227..102320Fucus serratus maleCDSF-serratus_M_contig14 102228..102320 +
1690962825.3672793-CDS-F-serratus_M_contig14:102227..1023201690962825.3672793-CDS-F-serratus_M_contig14:102227..102320Fucus serratus maleCDSF-serratus_M_contig14 102228..102320 +
1622929380.8328006-CDS-F-serratus_M_contig14:102732..1028191622929380.8328006-CDS-F-serratus_M_contig14:102732..102819Fucus serratus maleCDSF-serratus_M_contig14 102733..102819 +
1690962825.375527-CDS-F-serratus_M_contig14:102732..1028191690962825.375527-CDS-F-serratus_M_contig14:102732..102819Fucus serratus maleCDSF-serratus_M_contig14 102733..102819 +
1622929380.8448262-CDS-F-serratus_M_contig14:103140..1032131622929380.8448262-CDS-F-serratus_M_contig14:103140..103213Fucus serratus maleCDSF-serratus_M_contig14 103141..103213 +
1690962825.3838701-CDS-F-serratus_M_contig14:103140..1032131690962825.3838701-CDS-F-serratus_M_contig14:103140..103213Fucus serratus maleCDSF-serratus_M_contig14 103141..103213 +
1622929380.859003-CDS-F-serratus_M_contig14:103570..1036561622929380.859003-CDS-F-serratus_M_contig14:103570..103656Fucus serratus maleCDSF-serratus_M_contig14 103571..103656 +
1690962825.3920195-CDS-F-serratus_M_contig14:103570..1036561690962825.3920195-CDS-F-serratus_M_contig14:103570..103656Fucus serratus maleCDSF-serratus_M_contig14 103571..103656 +
1622929380.8706226-CDS-F-serratus_M_contig14:104013..1040731622929380.8706226-CDS-F-serratus_M_contig14:104013..104073Fucus serratus maleCDSF-serratus_M_contig14 104014..104073 +
1690962825.4000647-CDS-F-serratus_M_contig14:104013..1040731690962825.4000647-CDS-F-serratus_M_contig14:104013..104073Fucus serratus maleCDSF-serratus_M_contig14 104014..104073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2873.1

>prot_F-serratus_M_contig14.2873.1 ID=prot_F-serratus_M_contig14.2873.1|Name=mRNA_F-serratus_M_contig14.2873.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MEDRSLQLPSVEPLLKLPTSAIVQFVSNKNEAQLLLDIGELAHEFDHLMS
YLSQWLEHQEYLKDDYQRAAGMRALQMSSLAPLTYQARLVNLHGVKVLQS
RITTCLQKLQRHMEMIQIFANQNTSFASELRLC
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mRNA from alignment at F-serratus_M_contig14:102179..104073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2873.1 ID=mRNA_F-serratus_M_contig14.2873.1|Name=mRNA_F-serratus_M_contig14.2873.1|organism=Fucus serratus male|type=mRNA|length=1895bp|location=Sequence derived from alignment at F-serratus_M_contig14:102179..104073+ (Fucus serratus male)
CGGGACTCGCAAATTCGTAACCATCTAGTTTGTTCTTCCGAAATAGATTA
TGGAGGATCGCAGTCTCCAGCTTCCTAGCGTGGAACCCTTGCTCAAGCTG
CCAACCTCGGCGATCGTCCAGTTTGTTTCTAACAAGAATGAGGTCAGCGT
TAGGACATACTTGATCCTCTGTCTGTAGACTTAGACTAGTTCATGAAAAT
AATAATGTAGTTGAACTAATCTCTCGGTTTTCGACGACTACCATATTGAT
TGATTGCATCTCGTAGAGCTTCCTCCACAGCCTCCAATGCCTGTCCATTT
CAACCTCGATATGTGTCTACGCCTGTAGACTATTAGGCAAACCGCAGAGG
GGGTCTGCGGGATCTGTGGTGCTTTTTTTGTGTTGCTGGTGTGGAATCAG
CGCCGACAGACCCAAGTCTCCAATGACACACATTCCGTAGTGCCCCGCAA
AGCTGTCGACACTCCGCAGCGATCGCGCTCCCTCCTCCTGACACAAACCC
GCGCCGTATTCACCCGTCTCGTTATTTTCCTGCGCGATGCTTCCCACAAC
GTAGGCCCAGCTGCTCCTAGACATCGGAGAGCTGGCCCACGAGTTCGACC
ACCTCATGAGCTATCTTTCGCAGTGGCTCGAGCACCAGGAGGTGAAGACA
ACTGGCGTTAATTCTGTTATTCACTTGCCCTCGCAGATGAACATGGTAGG
GGCTTTGCTTTGCACCGCGCGACCTCAACTGGACAAACGAGCCAGTAGCA
TCACGCGTTGAAGATGCTTCATCTGGAAGTCACAGTTTTACAATACTATC
AGTGTGCCTTACTTGTGCATCCCGTAGCTATACAGCACCCCCCCCCCAAA
AAAAAAAAGTCCCATACAAATATATTTCCTGCCTCACGCGTCTGGCGGCG
TTTTGGTATTATTTTGCGACCCGCGTGCACGTGGCGTTTCCGTCTGTCTG
CGCCGCGTTCAGTACCTCAAAGACGACTATCAGCGAGCCGCGGGGATGAG
GGCGTTGCAGATGTCGTCACTTGCGCCGTTGACGTGTGAGCGCATCAAAT
GGACATTAAATAGCACCTTCACTTGAATAATGGCACTCGCGTGCGCAGTC
GTTAACTTGCAGTGTTGTACACAGCCGCCACCACTATGAAACTCGGATGC
TGTTACGGAGACACGCTTGCGGTTTGTAACCTCCTCGAGCAGTATCATCA
CAATTCTCTCAACTTCATACTCTGTTTCCCCGCCTTCGCCCTTTTTGTCG
GTGGATGCCGGCTCGGCGTCACTACTTCATCAACTGCTATCCCTCATCCG
CCCCCCCAGGAAAACAAAATCTAAAGCCGTATCCCCCGCGTAGTGGGCGG
TGGATGTGTTTCCTTAAACTCCCAACTGACACACTCTCGCAGATCAAGCG
CGCTTGGTCAACCTCCACGGAGTGAAAGTGCTACAGTCGAGGATAACGAC
GTGCCTTCAGAAACTGCAGAGGCACATGGTAAGCGCGCGCGGCCAAACTT
ACCGCGGCGGGAAATTACGACTTTCAATCTTGCAATGTTTCGCCACCCGT
GGTGCCCTGAAGCTTCGACAGCGAAATGGAATCCGTGAAAGCGTTGCTGT
ATTTTTCGGTTCGAATTTTGGTGTAGGTTGCGCTTTTCTGGCGGGCTTCG
TGCCGGAATTTCTGCGTTCAATCCACAAAGAGCCACTCCTGCGCGCGCTA
CCCCCCCGTTCGCCCCCTTTCGGCAACGCTTCTCTGTCGTGAATTGTATG
GTGCGCAAATGGTTTTTGCAAGCAAGGTTTCTGATTTCAAATTCTCCTTC
GCGCCGTCCCCCCCCGCGCACGCCGCACACTCTAGGAAATGATCCAGATC
TTCGCCAATCAAAATACCTCTTTCGCGTCGGAGCTGCGCCTCTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:102179..104073+

>mRNA_F-serratus_M_contig14.2873.1 ID=mRNA_F-serratus_M_contig14.2873.1|Name=mRNA_F-serratus_M_contig14.2873.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig14:102179..104073+ (Fucus serratus male)
ATGGAGGATCGCAGTCTCCAGCTTCCTAGCGTGGAACCCTTGCTCAAGCT
GCCAACCTCGGCGATCGTCCAGTTTGTTTCTAACAAGAATGAGATGGAGG
ATCGCAGTCTCCAGCTTCCTAGCGTGGAACCCTTGCTCAAGCTGCCAACC
TCGGCGATCGTCCAGTTTGTTTCTAACAAGAATGAGGCCCAGCTGCTCCT
AGACATCGGAGAGCTGGCCCACGAGTTCGACCACCTCATGAGCTATCTTT
CGCAGTGGCTCGAGCACCAGGAGGCCCAGCTGCTCCTAGACATCGGAGAG
CTGGCCCACGAGTTCGACCACCTCATGAGCTATCTTTCGCAGTGGCTCGA
GCACCAGGAGTACCTCAAAGACGACTATCAGCGAGCCGCGGGGATGAGGG
CGTTGCAGATGTCGTCACTTGCGCCGTTGACGTTACCTCAAAGACGACTA
TCAGCGAGCCGCGGGGATGAGGGCGTTGCAGATGTCGTCACTTGCGCCGT
TGACGTATCAAGCGCGCTTGGTCAACCTCCACGGAGTGAAAGTGCTACAG
TCGAGGATAACGACGTGCCTTCAGAAACTGCAGAGGCACATGATCAAGCG
CGCTTGGTCAACCTCCACGGAGTGAAAGTGCTACAGTCGAGGATAACGAC
GTGCCTTCAGAAACTGCAGAGGCACATGGAAATGATCCAGATCTTCGCCA
ATCAAAATACCTCTTTCGCGTCGGAGCTGCGCCTCTGCGAAATGATCCAG
ATCTTCGCCAATCAAAATACCTCTTTCGCGTCGGAGCTGCGCCTCTGC
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