mRNA_F-serratus_M_contig138.2757.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig138.2757.1
Unique NamemRNA_F-serratus_M_contig138.2757.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig138.2757.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.360e-12
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 2 
Query:  629 LQRVAFQKELQAGLSQNQAAVESKDKWSRSASFWDRSLDMGKLKKVKDK----DATAPKLGENAFQAKQEELHSKSRR 850
            L R+A  KELQ+GLS+ QAA E KD  SR++SFWDRSLDMGK+KKVK+K    + +A   G+ AFQAKQE++H +++R
Sbjct: 1150 LHRLASAKELQSGLSRKQAAEEHKDNISRASSFWDRSLDMGKVKKVKEKKDPQEMSASSSGD-AFQAKQEQMHGQAKR 1226
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig138.2757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJN5_9PHAE9.360e-1257.69USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig138contigF-serratus_M_contig138:714170..716643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons4
Model size1217
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig138.2757.1prot_F-serratus_M_contig138.2757.1Fucus serratus malepolypeptideF-serratus_M_contig138 714252..716438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.9752283-UTR-F-serratus_M_contig138:714169..7142511622929357.9752283-UTR-F-serratus_M_contig138:714169..714251Fucus serratus maleUTRF-serratus_M_contig138 714170..714251 +
1690962814.5500982-UTR-F-serratus_M_contig138:714169..7142511690962814.5500982-UTR-F-serratus_M_contig138:714169..714251Fucus serratus maleUTRF-serratus_M_contig138 714170..714251 +
1622929358.1865375-UTR-F-serratus_M_contig138:716438..7166431622929358.1865375-UTR-F-serratus_M_contig138:716438..716643Fucus serratus maleUTRF-serratus_M_contig138 716439..716643 +
1690962814.6043854-UTR-F-serratus_M_contig138:716438..7166431690962814.6043854-UTR-F-serratus_M_contig138:716438..716643Fucus serratus maleUTRF-serratus_M_contig138 716439..716643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.0007186-CDS-F-serratus_M_contig138:714251..7146621622929358.0007186-CDS-F-serratus_M_contig138:714251..714662Fucus serratus maleCDSF-serratus_M_contig138 714252..714662 +
1690962814.565307-CDS-F-serratus_M_contig138:714251..7146621690962814.565307-CDS-F-serratus_M_contig138:714251..714662Fucus serratus maleCDSF-serratus_M_contig138 714252..714662 +
1622929358.0168312-CDS-F-serratus_M_contig138:715267..7153991622929358.0168312-CDS-F-serratus_M_contig138:715267..715399Fucus serratus maleCDSF-serratus_M_contig138 715268..715399 +
1690962814.5732014-CDS-F-serratus_M_contig138:715267..7153991690962814.5732014-CDS-F-serratus_M_contig138:715267..715399Fucus serratus maleCDSF-serratus_M_contig138 715268..715399 +
1622929358.126509-CDS-F-serratus_M_contig138:715701..7158391622929358.126509-CDS-F-serratus_M_contig138:715701..715839Fucus serratus maleCDSF-serratus_M_contig138 715702..715839 +
1690962814.5811489-CDS-F-serratus_M_contig138:715701..7158391690962814.5811489-CDS-F-serratus_M_contig138:715701..715839Fucus serratus maleCDSF-serratus_M_contig138 715702..715839 +
1622929358.171162-CDS-F-serratus_M_contig138:716189..7164381622929358.171162-CDS-F-serratus_M_contig138:716189..716438Fucus serratus maleCDSF-serratus_M_contig138 716190..716438 +
1690962814.5918622-CDS-F-serratus_M_contig138:716189..7164381690962814.5918622-CDS-F-serratus_M_contig138:716189..716438Fucus serratus maleCDSF-serratus_M_contig138 716190..716438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig138.2757.1

>prot_F-serratus_M_contig138.2757.1 ID=prot_F-serratus_M_contig138.2757.1|Name=mRNA_F-serratus_M_contig138.2757.1|organism=Fucus serratus male|type=polypeptide|length=310bp
MADSSNEGKPATPQCYNNEKGSVEKEAKGSREGVSTQGEMGKRASSPVCA
RDPVQVSKRRKLKNENKGSAANASGREGAFSLKGGGEATGDSPSGVARAS
SAADAVGGEGTTRNDNGGKGGGSSSISSLDKSSETCEVTGKRVVVPWRPT
KKKSKELFAQKIDSWMDGDQDKDDSLAMDGEDLQRVAFQKELQAGLSQNQ
AAVESKDKWSRSASFWDRSLDMGKLKKVKDKDATAPKLGENAFQAKQEEL
HSKSRRGHPEAVPHKMVPTNDENRRVSSGEGQKRNRGGSGGELKMGRGGG
KARGKKARQ*
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mRNA from alignment at F-serratus_M_contig138:714170..716643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig138.2757.1 ID=mRNA_F-serratus_M_contig138.2757.1|Name=mRNA_F-serratus_M_contig138.2757.1|organism=Fucus serratus male|type=mRNA|length=2474bp|location=Sequence derived from alignment at F-serratus_M_contig138:714170..716643+ (Fucus serratus male)
GCCGGGAGCGGGGCAGCATGGGGGGGCGGCGGCAGCCGAGACGACGGTAG
CAGACGACACTCGGGCTGTGGGCAAGGCAATCATGGCGGATAGCAGCAAC
GAAGGTAAACCTGCCACACCGCAGTGTTACAACAATGAGAAAGGGAGCGT
TGAAAAAGAGGCCAAGGGGAGTAGAGAAGGCGTTTCGACTCAAGGGGAGA
TGGGGAAGCGGGCGTCTTCGCCCGTGTGTGCGCGCGATCCTGTCCAAGTG
TCGAAGCGGAGAAAACTTAAGAACGAAAATAAGGGCTCGGCGGCGAATGC
AAGTGGCCGCGAAGGGGCGTTTTCTCTCAAGGGCGGTGGTGAGGCGACTG
GAGATTCGCCTTCGGGGGTGGCAAGAGCGAGCTCTGCCGCGGATGCAGTC
GGGGGGGAGGGGACGACACGAAATGACAACGGTGGAAAGGGTGGTGGTAG
CAGCAGCATCAGCAGCCTGGATAAGTCATCCGAAACCTGCGAGGTACAAC
GATCAGCAGATGTATGTTGTTTCTTCGACACAAAGAGTCGAACTGTTGTC
TTGCTCTTTTGTTTCTTATCCGCGTTCTGTGTGTGCATACCTTAGGCACT
AGTTTTCTCCTCGGCTGGTCAATGCACTCATGATCACAACAGTACAGCTT
CTCTGGAATGTTTGCGGACATAAAACTACGAACGTATCAGAGAAAGAAAG
CGAAAATTCGCCATCTCCAGTGCGTACGCTGACGAAGTATTTTTGCTCAC
CACCACCTGTGCGTACCACCGAAACAACCAGAGGGGTCCCGCTGAGTGTC
TGGGTGTTGACCATACCCTTTGACGATGTCGCATCACCGCTCGGAGTCGC
CACTGTCGCTGTTGTTGCCGCCACCTCGGGCTCGCTAGAGACGCCGTCAA
CCCTACAGGGATCAATGGCTACCCGGGAGAAGGGGCTCGCGGAGCCTTCT
ACCGCGCGAGCATCGTCGTGCGCCAGATATGGCATTTTCCCGTCTTCGCC
GCTGCCGTCGCTCGTTGTTTCCTTGTGGTGTGGATGCGTTTTTTTTCCGG
TGATTGCAGCTAACCTCGAACGCCTCCTGTTAACAATTTCGGCGGCAGGT
AACGGGCAAAAGGGTGGTCGTCCCTTGGCGTCCGACGAAGAAAAAGAGCA
AGGAGCTGTTTGCGCAGAAGATAGACTCCTGGATGGACGGGGACCAAGAC
AAGGATGACTCCCTAGCGATGGATGGAGAGGTAGGGTCTTGGATGAGGGA
GGGGGGAAGGCTGGGTAGCTACAAGCTCTTGGGGTAGCAAATGTTGTTCT
TGAAGCCCTAATGCGTAGTGCTACAATACGTATTTGTTCTCTAAAACCGC
GTCGAGCCTGTCCGCTCATCCTTTTATTTTTTTTGTTAGTGATGATGCTA
CTCGAACAAACCGCTTGAGGTGCTCGGTTCTGTGTTCATCACGTCTCGGC
TTCGATGGTTGAGATTCGCGACACTGCTCATACGTTTCAAACGCCGCCCG
TGTCCCGCTTGGCCCGATATAATGATTTGCAGGATCTTCAACGGGTGGCC
TTCCAGAAGGAGCTGCAGGCTGGACTGTCGCAAAATCAGGCGGCCGTAGA
GAGCAAGGACAAGTGGTCGAGGTCTGCATCATTCTGGGATCGTTCCCTGG
ACATGGGGAAGCTGAAGAAGGTACTCTGTCCTGTGTTGGGCTCTTGATAG
ATGTGGGGCCTGGTGATCAGTTCGCAAAGCCGGCTATTCTTGGAAAAGCC
TAGTATGTGTTTTGCCTTACCGTATGATGGTGTTCCTCTTGTGAAGGCGT
TCTCCCGCTGGGGCATTCTTGTACCTTGGGAACCAAAGGATAATATGGGT
AGACTTGCCCGTGACTTTCTTCGTCCCCCGGTAGATTATTTCTTCTGAGC
GATTCTCTCGCTACTGCTCCTCTCTCGTCTATTGGACGTGTTACGTTGCG
GTTTGCGATAACCTTTCTATCTCCCTGGGACCATGTTGGTTTTGCCGTTT
TCGAAATACGCTCTTGGCAGGTGAAAGACAAAGATGCCACGGCCCCGAAG
CTGGGAGAAAACGCCTTCCAGGCTAAGCAGGAAGAGTTGCACAGCAAGTC
GAGGAGGGGTCACCCGGAAGCAGTGCCCCACAAGATGGTCCCTACTAATG
ATGAAAACCGACGCGTTTCTTCCGGAGAGGGACAGAAGCGAAATAGAGGC
GGCAGTGGCGGCGAGCTCAAGATGGGTAGAGGTGGGGGAAAGGCGAGGGG
GAAAAAAGCTCGCCAATGAAATAATATGTGACGGAAACGTTGAAAAACTG
CTGGCAGATGGATTCGCGCTTCATGTGTGTACTCTTTAAAAAAATGCACG
TAATTACGCAAAATCCGGCCATGCCATGGTGACGATCTATGATGCCTGAA
TTGGTCCTCCTAATTGGAGATGAGAGATCGTCGTTATGATAATCACTTGT
TTCTGCATAGGTGTGTTTATATGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig138:714170..716643+

>mRNA_F-serratus_M_contig138.2757.1 ID=mRNA_F-serratus_M_contig138.2757.1|Name=mRNA_F-serratus_M_contig138.2757.1|organism=Fucus serratus male|type=CDS|length=1860bp|location=Sequence derived from alignment at F-serratus_M_contig138:714170..716643+ (Fucus serratus male)
ATGGCGGATAGCAGCAACGAAGGTAAACCTGCCACACCGCAGTGTTACAA
CAATGAGAAAGGGAGCGTTGAAAAAGAGGCCAAGGGGAGTAGAGAAGGCG
TTTCGACTCAAGGGGAGATGGGGAAGCGGGCGTCTTCGCCCGTGTGTGCG
CGCGATCCTGTCCAAGTGTCGAAGCGGAGAAAACTTAAGAACGAAAATAA
GGGCTCGGCGGCGAATGCAAGTGGCCGCGAAGGGGCGTTTTCTCTCAAGG
GCGGTGGTGAGGCGACTGGAGATTCGCCTTCGGGGGTGGCAAGAGCGAGC
TCTGCCGCGGATGCAGTCGGGGGGGAGGGGACGACACGAAATGACAACGG
TGGAAAGGGTGGTGGTAGCAGCAGCATCAGCAGCCTGGATAAGTCATCCG
AAACCTGCGAGATGGCGGATAGCAGCAACGAAGGTAAACCTGCCACACCG
CAGTGTTACAACAATGAGAAAGGGAGCGTTGAAAAAGAGGCCAAGGGGAG
TAGAGAAGGCGTTTCGACTCAAGGGGAGATGGGGAAGCGGGCGTCTTCGC
CCGTGTGTGCGCGCGATCCTGTCCAAGTGTCGAAGCGGAGAAAACTTAAG
AACGAAAATAAGGGCTCGGCGGCGAATGCAAGTGGCCGCGAAGGGGCGTT
TTCTCTCAAGGGCGGTGGTGAGGCGACTGGAGATTCGCCTTCGGGGGTGG
CAAGAGCGAGCTCTGCCGCGGATGCAGTCGGGGGGGAGGGGACGACACGA
AATGACAACGGTGGAAAGGGTGGTGGTAGCAGCAGCATCAGCAGCCTGGA
TAAGTCATCCGAAACCTGCGAGGTAACGGGCAAAAGGGTGGTCGTCCCTT
GGCGTCCGACGAAGAAAAAGAGCAAGGAGCTGTTTGCGCAGAAGATAGAC
TCCTGGATGGACGGGGACCAAGACAAGGATGACTCCCTAGCGATGGATGG
AGAGGTAACGGGCAAAAGGGTGGTCGTCCCTTGGCGTCCGACGAAGAAAA
AGAGCAAGGAGCTGTTTGCGCAGAAGATAGACTCCTGGATGGACGGGGAC
CAAGACAAGGATGACTCCCTAGCGATGGATGGAGAGGATCTTCAACGGGT
GGCCTTCCAGAAGGAGCTGCAGGCTGGACTGTCGCAAAATCAGGCGGCCG
TAGAGAGCAAGGACAAGTGGTCGAGGTCTGCATCATTCTGGGATCGTTCC
CTGGACATGGGGAAGCTGAAGAAGGATCTTCAACGGGTGGCCTTCCAGAA
GGAGCTGCAGGCTGGACTGTCGCAAAATCAGGCGGCCGTAGAGAGCAAGG
ACAAGTGGTCGAGGTCTGCATCATTCTGGGATCGTTCCCTGGACATGGGG
AAGCTGAAGAAGGTGAAAGACAAAGATGCCACGGCCCCGAAGCTGGGAGA
AAACGCCTTCCAGGCTAAGCAGGAAGAGTTGCACAGCAAGTCGAGGAGGG
GTCACCCGGAAGCAGTGCCCCACAAGATGGTCCCTACTAATGATGAAAAC
CGACGCGTTTCTTCCGGAGAGGGACAGAAGCGAAATAGAGGCGGCAGTGG
CGGCGAGCTCAAGATGGGTAGAGGTGGGGGAAAGGCGAGGGGGAAAAAAG
CTCGCCAATGAGTGAAAGACAAAGATGCCACGGCCCCGAAGCTGGGAGAA
AACGCCTTCCAGGCTAAGCAGGAAGAGTTGCACAGCAAGTCGAGGAGGGG
TCACCCGGAAGCAGTGCCCCACAAGATGGTCCCTACTAATGATGAAAACC
GACGCGTTTCTTCCGGAGAGGGACAGAAGCGAAATAGAGGCGGCAGTGGC
GGCGAGCTCAAGATGGGTAGAGGTGGGGGAAAGGCGAGGGGGAAAAAAGC
TCGCCAATGA
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