mRNA_F-serratus_M_contig1367.2679.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1367.2679.1
Unique NamemRNA_F-serratus_M_contig1367.2679.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.100e-16
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGIN----ADQWTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +      D+W  +A+D   W    E+G   FM KW   E
Sbjct:  308 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKDPEVWYNKVEKGAAWFMRKWNRQE 401
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.630e-15
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A++   W    E G   FM KW   E
Sbjct:   68 VRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQE 161
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.730e-15
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF ++ ++    W  +A+D   W    E G   FM KW   E
Sbjct:  702 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQE 795
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.300e-15
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A+D   W    + G   FM KW   E
Sbjct:  232 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVKDGAARFMRKWHRQE 325
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5JTX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.790e-15
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A++   W    E G   FM KW   E
Sbjct:  320 VRKRRLCFAGFVMRMEDSRLPKRILIGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQE 413
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.300e-14
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A+D   W    E G   FM KW   E
Sbjct:  607 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVPRLGEDLVAFNMRDEKEGGKWKESAKDPEVWYDKVEDGAAWFMRKWHRQE 700
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5L2N2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.580e-14
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPKC+    M GG G  GGQE +W   +  DL AF +  ++    W  +A++   W    E G   FM KW   E
Sbjct:  307 VRKRRLCFAGFVMRMEDSRLPKCMPLEAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQE 400
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5JVI3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.780e-14
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A++   W    E G   FM KW   E
Sbjct:  862 VRKRRLCFAGFVMRMEDSRLPKRMLIGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQE 955
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.840e-14
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A+D   W    E     FM KW   E
Sbjct:   84 VRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQE 177
[Close]
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Match: A0A6H5JUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.940e-14
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYDLRAFGINADQ----WTTAAQDEGKWRRTAEQGVEHFMAKWIAAE 270
            +R+RR+ FA FV RMED+RLPK ++ G M GG G  GGQE +W   +  DL AF +  ++    W  +A+    W    E G   FM KW   E
Sbjct:  144 VRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKGPEVWYNKVEDGAAWFMRKWHRQE 237
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1367.2679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LG55_9PHAE5.100e-1643.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNV8_9PHAE2.630e-1541.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE3.730e-1542.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C0_9PHAE5.300e-1541.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX2_9PHAE8.790e-1541.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L618_9PHAE1.300e-1442.55MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2N2_9PHAE1.580e-1441.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JVI3_9PHAE1.780e-1441.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGF6_9PHAE1.840e-1441.49Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA0_9PHAE1.940e-1441.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1367contigF-serratus_M_contig1367:55642..55938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.3
Seed ortholog evalue9.2e-12
Seed eggNOG ortholog6500.XP_005092354.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.4319038-CDS-F-serratus_M_contig1367:55641..559381622929345.4319038-CDS-F-serratus_M_contig1367:55641..55938Fucus serratus maleCDSF-serratus_M_contig1367 55642..55938 -
1690962808.6313186-CDS-F-serratus_M_contig1367:55641..559381690962808.6313186-CDS-F-serratus_M_contig1367:55641..55938Fucus serratus maleCDSF-serratus_M_contig1367 55642..55938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1367.2679.1prot_F-serratus_M_contig1367.2679.1Fucus serratus malepolypeptideF-serratus_M_contig1367 55642..55938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1367.2679.1

>prot_F-serratus_M_contig1367.2679.1 ID=prot_F-serratus_M_contig1367.2679.1|Name=mRNA_F-serratus_M_contig1367.2679.1|organism=Fucus serratus male|type=polypeptide|length=99bp
LRRRRILFARFVARMEDTRLPKCVMFGEMVGGAGCAGGQEKEWRECILYD
LRAFGINADQWTTAAQDEGKWRRTAEQGVEHFMAKWIAAEKVKAGLRHA
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mRNA from alignment at F-serratus_M_contig1367:55642..55938-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1367.2679.1 ID=mRNA_F-serratus_M_contig1367.2679.1|Name=mRNA_F-serratus_M_contig1367.2679.1|organism=Fucus serratus male|type=mRNA|length=297bp|location=Sequence derived from alignment at F-serratus_M_contig1367:55642..55938- (Fucus serratus male)
TTACGCAGGAGGCGGATCTTGTTTGCGAGATTTGTGGCGCGCATGGAAGA
TACGAGACTGCCGAAGTGCGTAATGTTCGGAGAAATGGTGGGGGGCGCGG
GCTGTGCGGGGGGCCAGGAAAAAGAGTGGAGGGAGTGTATCCTGTACGAT
CTCAGAGCTTTCGGTATCAACGCCGATCAGTGGACGACTGCAGCCCAGGA
CGAGGGGAAATGGCGCAGAACGGCAGAACAAGGGGTGGAACACTTCATGG
CAAAATGGATCGCTGCAGAGAAAGTCAAGGCTGGACTACGGCATGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1367:55642..55938-

>mRNA_F-serratus_M_contig1367.2679.1 ID=mRNA_F-serratus_M_contig1367.2679.1|Name=mRNA_F-serratus_M_contig1367.2679.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1367:55642..55938- (Fucus serratus male)
TTACGCAGGAGGCGGATCTTGTTTGCGAGATTTGTGGCGCGCATGGAAGA
TACGAGACTGCCGAAGTGCGTAATGTTCGGAGAAATGGTGGGGGGCGCGG
GCTGTGCGGGGGGCCAGGAAAAAGAGTGGAGGGAGTGTATCCTGTACGAT
CTCAGAGCTTTCGGTATCAACGCCGATCAGTGGACGACTGCAGCCCAGGA
CGAGGGGAAATGGCGCAGAACGGCAGAACAAGGGGTGGAACACTTCATGG
CAAAATGGATCGCTGCAGAGAAAGTCAAGGCTGGACTACGGCATGCATTA
CGCAGGAGGCGGATCTTGTTTGCGAGATTTGTGGCGCGCATGGAAGATAC
GAGACTGCCGAAGTGCGTAATGTTCGGAGAAATGGTGGGGGGCGCGGGCT
GTGCGGGGGGCCAGGAAAAAGAGTGGAGGGAGTGTATCCTGTACGATCTC
AGAGCTTTCGGTATCAACGCCGATCAGTGGACGACTGCAGCCCAGGACGA
GGGGAAATGGCGCAGAACGGCAGAACAAGGGGTGGAACACTTCATGGCAA
AATGGATCGCTGCAGAGAAAGTCAAGGCTGGACTACGGCATGCA
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