mRNA_F-serratus_M_contig1361.2665.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1361.2665.1
Unique NamemRNA_F-serratus_M_contig1361.2665.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1361.2665.1 vs. uniprot
Match: D8LMB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB7_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.200e-33
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 1 
Query:    1 SLPKLKASRLNGRKRGRDEFDGFGGRETPRVLRRGSLIGGGEHTKDAILELRRQLAIAKDGLMDLRALVRADVAWVQETVGGTMPRRAKEFSYRWGLMKIEEITRRWEECSLAAAMAKWVRHHKFIANKVLVK 399
            SLPKLK S ++ R   RDE+D FGGRETP VLRR +L GGGE +  A+ +LR QL + + GL+DL A VRADVAWVQETVG  M RRA+    +WG  KI E+T RWE  SL  AM  W R+ +++AN++ V+
Sbjct:  479 SLPKLKTSSVS-RASTRDEYDRFGGRETPSVLRRSALSGGGEKSWKAVEQLRHQLEVTECGLLDLNARVRADVAWVQETVGARMSRRARVSCCKWGSEKIAELTFRWERRSLDKAMGTWTRYREYMANRLWVR 610
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BLAST of mRNA_F-serratus_M_contig1361.2665.1 vs. uniprot
Match: A0A6H5K374_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K374_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.870e-9
Identity = 49/115 (42.61%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 SLPKLKASRLNGRKRGRDEFDGFGGRETPRVLRRGSLIGGGEHTKDAILELRRQL-------AIAKDGLMDLRALVRADVAWVQETVGGTMPRRAKEFSYRWGLMKIEEITRRWE 324
            SLPKLKAS ++ R   RDE+D FGGRETP VLRR +L GGGE +  A+ +LR QL       AIA+ G  D+  L R         + G   RR       WG     ++ RR E
Sbjct:  475 SLPKLKASSVS-RVSSRDEYDRFGGRETPSVLRRSALSGGGEMSWKAVEQLRHQLEVTEVGTAIARQGHEDVDTLPR---------IHGEQARRLLNM---WGHRLTSKVRRRGE 576
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1361.2665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB7_ECTSI1.200e-3354.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K374_9PHAE8.870e-942.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1361contigF-serratus_M_contig1361:186826..188416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue3.8e-30
Seed eggNOG ortholog2880.D8LMB7
Preferred nameWAC
KEGG koko:K16743,ko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons5
Model size440
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1361.2665.1prot_F-serratus_M_contig1361.2665.1Fucus serratus malepolypeptideF-serratus_M_contig1361 186827..188416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.1798208-CDS-F-serratus_M_contig1361:186826..1868781622929343.1798208-CDS-F-serratus_M_contig1361:186826..186878Fucus serratus maleCDSF-serratus_M_contig1361 186827..186878 -
1690962807.3765893-CDS-F-serratus_M_contig1361:186826..1868781690962807.3765893-CDS-F-serratus_M_contig1361:186826..186878Fucus serratus maleCDSF-serratus_M_contig1361 186827..186878 -
1622929343.211981-CDS-F-serratus_M_contig1361:187140..1872091622929343.211981-CDS-F-serratus_M_contig1361:187140..187209Fucus serratus maleCDSF-serratus_M_contig1361 187141..187209 -
1690962807.3867123-CDS-F-serratus_M_contig1361:187140..1872091690962807.3867123-CDS-F-serratus_M_contig1361:187140..187209Fucus serratus maleCDSF-serratus_M_contig1361 187141..187209 -
1622929343.2260563-CDS-F-serratus_M_contig1361:187519..1876591622929343.2260563-CDS-F-serratus_M_contig1361:187519..187659Fucus serratus maleCDSF-serratus_M_contig1361 187520..187659 -
1690962807.394405-CDS-F-serratus_M_contig1361:187519..1876591690962807.394405-CDS-F-serratus_M_contig1361:187519..187659Fucus serratus maleCDSF-serratus_M_contig1361 187520..187659 -
1622929343.2436128-CDS-F-serratus_M_contig1361:187988..1881301622929343.2436128-CDS-F-serratus_M_contig1361:187988..188130Fucus serratus maleCDSF-serratus_M_contig1361 187989..188130 -
1690962807.4024282-CDS-F-serratus_M_contig1361:187988..1881301690962807.4024282-CDS-F-serratus_M_contig1361:187988..188130Fucus serratus maleCDSF-serratus_M_contig1361 187989..188130 -
1622929343.2584398-CDS-F-serratus_M_contig1361:188381..1884161622929343.2584398-CDS-F-serratus_M_contig1361:188381..188416Fucus serratus maleCDSF-serratus_M_contig1361 188382..188416 -
1690962807.4111729-CDS-F-serratus_M_contig1361:188381..1884161690962807.4111729-CDS-F-serratus_M_contig1361:188381..188416Fucus serratus maleCDSF-serratus_M_contig1361 188382..188416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1361.2665.1

>prot_F-serratus_M_contig1361.2665.1 ID=prot_F-serratus_M_contig1361.2665.1|Name=mRNA_F-serratus_M_contig1361.2665.1|organism=Fucus serratus male|type=polypeptide|length=146bp
SLPKLKASRLNGRKRGRDEFDGFGGRETPRVLRRGSLIGGGEHTKDAILE
LRRQLAIAKDGLMDLRALVRADVAWVQETVGGTMPRRAKEFSYRWGLMKI
EEITRRWEECSLAAAMAKWVRHHKFIANKVLVKAFLKRKGAAMTGR
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mRNA from alignment at F-serratus_M_contig1361:186826..188416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1361.2665.1 ID=mRNA_F-serratus_M_contig1361.2665.1|Name=mRNA_F-serratus_M_contig1361.2665.1|organism=Fucus serratus male|type=mRNA|length=1591bp|location=Sequence derived from alignment at F-serratus_M_contig1361:186826..188416- (Fucus serratus male)
TCGCTCCCGAAGCTCAAGGCTTCCAGACTGAATGGGTAAGGGCGGGTGGT
CCTGGTGGGGAAACGTACTGGTGTCCTACCGAAGGCGCTCAAAACTATAG
GTCGTGCAGTTCAAAGGCTTCGAGAATCATAGTATTTCGATAACACCACG
AGCCAACATCAGCACGTCTTCCACCAATGGCAACTACCCCTTCCCTTGCA
TGCCCTCCTGGTCTTGTTGGTGGCACGCTGTTTGTCCATCTTATTTCCAC
CACGATCATACTTCATGCGCCAAAACACCACAACAGGCGGAAACGCGGTC
GGGACGAATTCGACGGGTTCGGCGGTCGAGAGACGCCACGCGTTCTTCGC
CGAGGTTCTCTCATTGGGGGGGGCGAACACACCAAAGACGCAATTTTGGA
ACTACGGCGTCAGCTGGCAATCGCCAAGGTTTGTTCTCTCATGTCTACTC
TTGTCACTTACTCTACCCTCTGCCGAACGCTATTAACAGAAACTGTTTAT
TCTCCCGTATATCGCATGCTTGCTCCTTCTCGGACAGGAATGTGTCCCAC
ATTGCGTCGCGTGTCGGAATCCTACTGTAAAAGCATCGTGCGAAACGTTT
GACCATGTGTAGGCAAAGGACCACCCTGTGCAAATACAGTGGACCTCATA
GAGACGAGTTTTCGAGCTGAATTGCGGGAAAACGATACTGCTTTCCTTAG
AGGTCTTGGAATTTCATTTCTCACCGAGCGATTGCCAAAATCTATGGTCA
AGGGCAGGATGGGTTAATGGATTTGAGAGCCCTGGTGCGAGCGGACGTCG
CATGGGTGCAGGAAACAGTGGGTGGTACGATGCCACGTCGGGCCAAGGAA
TTCAGCTACAGATGGGGCTTGATGAAGATCGAAGAAATCACGCGCCGGTG
CGGTATTTTGTAGCGTCCTTAACCTTCGCTTCTGTTTGTGCCACGAGTGG
CGCTCTGAGGACGTTCTCCTAATTTGCATATTTTCATGTAGACAACCACA
TGTGTTACATTCACCACATTTTTTTAATAGGGTTTCATTCAAACAAAAGC
TCTCGTTTCCATGTGCCCCACTATATCGAATCATTTTGAGTGAAATGCAC
TGGCGGAGTCACCTTCAACGTTTGTGAAGAATCTGAGATGCACCACAACT
AGCGTTACCACATGGTCGATTCTCGTCAGAAAAGGCTCTCACGCTGACGA
CACCCAGGTGGGAAGAGTGTTCTTTAGCCGCAGCTATGGCGAAGTGGGTG
CGGCATCACAAATTCATTGCAAACAAGTAAGTTTACAATATGCCGGATAA
GGGGTGAGGCGTTCGGACCCGTACGTAACATCCATAAAAAAAACAGCTTA
GGGTTCATATTTAAACGTAACGATGCACCCTTCGAAAGAGCCACTGCGCA
CACAAACTGGTTTTAATACTCGCAGAAACCTCCGATTCTCCGCGGAGATT
TGATTTTCTATCTGTAACTGAGTTTTGCTTTCCTGTAAGGTTAGGTATCG
CCATCTGATATCCTATCTCTACATTTGCTTGGGTGAAGGGTGCTAGTAAA
GGCGTTCCTCAAACGTAAGGGAGCAGCGATGACTGGACGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1361:186826..188416-

>mRNA_F-serratus_M_contig1361.2665.1 ID=mRNA_F-serratus_M_contig1361.2665.1|Name=mRNA_F-serratus_M_contig1361.2665.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig1361:186826..188416- (Fucus serratus male)
TCGCTCCCGAAGCTCAAGGCTTCCAGACTGAATGGTCGCTCCCGAAGCTC
AAGGCTTCCAGACTGAATGGGCGGAAACGCGGTCGGGACGAATTCGACGG
GTTCGGCGGTCGAGAGACGCCACGCGTTCTTCGCCGAGGTTCTCTCATTG
GGGGGGGCGAACACACCAAAGACGCAATTTTGGAACTACGGCGTCAGCTG
GCAATCGCCAAGGCGGAAACGCGGTCGGGACGAATTCGACGGGTTCGGCG
GTCGAGAGACGCCACGCGTTCTTCGCCGAGGTTCTCTCATTGGGGGGGGC
GAACACACCAAAGACGCAATTTTGGAACTACGGCGTCAGCTGGCAATCGC
CAAGGATGGGTTAATGGATTTGAGAGCCCTGGTGCGAGCGGACGTCGCAT
GGGTGCAGGAAACAGTGGGTGGTACGATGCCACGTCGGGCCAAGGAATTC
AGCTACAGATGGGGCTTGATGAAGATCGAAGAAATCACGCGCCGGATGGG
TTAATGGATTTGAGAGCCCTGGTGCGAGCGGACGTCGCATGGGTGCAGGA
AACAGTGGGTGGTACGATGCCACGTCGGGCCAAGGAATTCAGCTACAGAT
GGGGCTTGATGAAGATCGAAGAAATCACGCGCCGGTGGGAAGAGTGTTCT
TTAGCCGCAGCTATGGCGAAGTGGGTGCGGCATCACAAATTCATTGCAAA
CAAGTGGGAAGAGTGTTCTTTAGCCGCAGCTATGGCGAAGTGGGTGCGGC
ATCACAAATTCATTGCAAACAAGGTGCTAGTAAAGGCGTTCCTCAAACGT
AAGGGAGCAGCGATGACTGGACGCGGTGCTAGTAAAGGCGTTCCTCAAAC
GTAAGGGAGCAGCGATGACTGGACGC
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