mRNA_F-serratus_M_contig135.2603.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig135.2603.1
Unique NamemRNA_F-serratus_M_contig135.2603.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 134 bits (337), Expect = 4.590e-34
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = 1
Query:   10 TVKAVIKKANPQSAAGPSGLRYSHLQAALCDGLVEDLAAFATLVYSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            TV A I++ NPQ + GPSGLR+S LQ++L   L E +A   ++++    LP  FW LHTSA LSA+G K RP+A GD+ RR+ G V CR+YG  LA++F+P GQYGVAV GG E++A
Sbjct: 1162 TVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLA 1278          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.130e-28
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   13 VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDGLVEDLAAFATLV-YSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  V Y    LP  FW LHTSA LSALG+K RP+A G VLRR+    FCR+Y   +A+ F+   Q+G  V GGVEI+A
Sbjct:  125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 242          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.800e-28
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   13 VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDGLVEDLAAFATLV-YSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  V Y    LP  FW LHTSA LSALG+K RP+A G VLRR+    FCR+Y   +A+ F+   Q+G  V GGVEI+A
Sbjct:  125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 242          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.990e-28
Identity = 63/118 (53.39%), Postives = 78/118 (66.10%), Query Frame = 1
Query:   13 VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDGLVEDLAAFATLV-YSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  V Y    LP  FW LHTSA LSALG+K RP+A G VLRR+    FCR+Y   +A+ F+   Q+G  V GGVEI+A
Sbjct:  125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 242          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.860e-27
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   13 VKAVIKKANPQSAAGPSGLRYSHLQAA-LCDGLVEDLAAFATLV-YSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  V Y    LP  FW LHTSA LSALG+K RP+A G VLRR+    FC +Y   +A+ F+   Q+G  V GGVEI+A
Sbjct:  125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVA 242          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A835Z1Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.370e-19
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 EEATVKAVIKKANPQSAAGPSGLRYSHLQAALCD--GLVEDLAAFA----TLVYSSRVLPQVFWTLHTSAKLSALGQ-------KARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMAL 363
            E  TV  +I++A+P S AGPSGLRYSHLQ AL    G  E  A       T+   +  LP  FW LH + +L+ L +       K RP+ CG+VL+R+  +V+       LA+  +P GQYGVAVS G E  A+
Sbjct:   14 EPETVAKLIQRASPYSGAGPSGLRYSHLQDALRTSWGRHEFAAVLTRWLQTVTREAARLPDAFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAM 147          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A835YZF6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.500e-18
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    1 EEATVKAVIKKANPQSAAGPSGLRYSHLQAALCD--GLVEDLAAFA----TLVYSSRVLPQVFWTLHTSAKLSALGQ-------KARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMAL 363
            E  TV  +I++A+P S AGPSGLRYSHLQ AL    G  E  A       T++  +  LP  FW LH + +L+ L +       K RP+ CG+VL+R+  +V+       LA+  +P GQYGVAVS G E  A+
Sbjct:  517 EPETVAKLIQRASPYSGAGPSGLRYSHLQDALRTSWGRHEFAAVLTRWLQTVMREAARLPDAFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAM 650          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 9.760e-18
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   94 LCDGLVEDLAAFATLV-YSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            + D   E LA F+  V Y    LP +FW   TSA LSALG+K RP+A G VLRR+    FCR+Y + +AD F+   Q+G  V GGVEI+A
Sbjct:    1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVA 90          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A835ZDR9_9STRA (Lon protease C-terminal proteolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDR9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.270e-17
Identity = 55/134 (41.04%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    1 EEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDGLVE-DLAAFAT-----LVYSSRVLPQVFWTLHTSAKLSALGQ-------KARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMAL 363
            E  TV  +I++A+P S AGPSGLRYSHLQ AL       + AA  T     ++  +  LP  FW LH + +L+ L +       K RP+ CG+VL+R+  +V+       LA+  +P GQYGVAVS G E  A+
Sbjct: 1045 EPETVAKLIQRASPHSGAGPSGLRYSHLQDALRTSWGRHEFAAVLTRWLQAVMREAARLPDAFWQLHGAGRLTLLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAM 1178          
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.220e-17
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   94 LCDGLVEDLAAFATLV-YSSRVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMA 360
            + D   E LA F+  V Y    LP  FW LHTSA LSALG+K RP+A G VLRR+    FCR+Y   +A+ F+   Q+G  V GGVEI+A
Sbjct:    1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 90          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN4.590e-3452.99Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE1.130e-2853.39Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE2.800e-2853.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE6.990e-2853.39Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE2.860e-2752.54Reverse transcriptase domain-containing protein n=... [more]
A0A835Z1Y7_9STRA2.370e-1941.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZF6_9STRA6.500e-1841.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L3H3_9PHAE9.760e-1848.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDR9_9STRA1.270e-1741.04Lon protease C-terminal proteolytic domain-contain... [more]
A0A6H5KSY9_9PHAE7.220e-1750.00Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:99320..99682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.1482992-CDS-F-serratus_M_contig135:99319..996821622929333.1482992-CDS-F-serratus_M_contig135:99319..99682Fucus serratus maleCDSF-serratus_M_contig135 99320..99682 -
1690962802.5903072-CDS-F-serratus_M_contig135:99319..996821690962802.5903072-CDS-F-serratus_M_contig135:99319..99682Fucus serratus maleCDSF-serratus_M_contig135 99320..99682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2603.1prot_F-serratus_M_contig135.2603.1Fucus serratus malepolypeptideF-serratus_M_contig135 99320..99682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig135.2603.1

>prot_F-serratus_M_contig135.2603.1 ID=prot_F-serratus_M_contig135.2603.1|Name=mRNA_F-serratus_M_contig135.2603.1|organism=Fucus serratus male|type=polypeptide|length=121bp
EEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDGLVEDLAAFATLVYSS
RVLPQVFWTLHTSAKLSALGQKARPVACGDVLRRVTGAVFCRRYGRKLAD
YFQPWGQYGVAVSGGVEIMAL
back to top

mRNA from alignment at F-serratus_M_contig135:99320..99682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig135.2603.1 ID=mRNA_F-serratus_M_contig135.2603.1|Name=mRNA_F-serratus_M_contig135.2603.1|organism=Fucus serratus male|type=mRNA|length=363bp|location=Sequence derived from alignment at F-serratus_M_contig135:99320..99682- (Fucus serratus male)
GAGGAGGCCACGGTAAAAGCTGTAATCAAGAAAGCCAACCCACAAAGCGC GGCAGGTCCGTCTGGACTACGCTACAGTCATCTGCAGGCTGCGCTGTGCG ATGGACTGGTTGAGGATCTCGCGGCGTTCGCGACGCTTGTTTATTCCAGC CGTGTTTTGCCTCAAGTGTTCTGGACACTGCACACGAGCGCTAAACTTTC CGCGTTGGGGCAAAAGGCGAGACCAGTGGCGTGCGGCGATGTATTGCGGA GAGTAACTGGCGCTGTTTTCTGCCGCCGATACGGCAGGAAGCTGGCAGAC TACTTTCAGCCCTGGGGCCAGTACGGCGTAGCAGTTTCAGGCGGAGTAGA GATAATGGCGCTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig135:99320..99682-

>mRNA_F-serratus_M_contig135.2603.1 ID=mRNA_F-serratus_M_contig135.2603.1|Name=mRNA_F-serratus_M_contig135.2603.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig135:99320..99682- (Fucus serratus male)
GAGGAGGCCACGGTAAAAGCTGTAATCAAGAAAGCCAACCCACAAAGCGC
GGCAGGTCCGTCTGGACTACGCTACAGTCATCTGCAGGCTGCGCTGTGCG
ATGGACTGGTTGAGGATCTCGCGGCGTTCGCGACGCTTGTTTATTCCAGC
CGTGTTTTGCCTCAAGTGTTCTGGACACTGCACACGAGCGCTAAACTTTC
CGCGTTGGGGCAAAAGGCGAGACCAGTGGCGTGCGGCGATGTATTGCGGA
GAGTAACTGGCGCTGTTTTCTGCCGCCGATACGGCAGGAAGCTGGCAGAC
TACTTTCAGCCCTGGGGCCAGTACGGCGTAGCAGTTTCAGGCGGAGTAGA
GATAATGGCGCTCGAGGAGGCCACGGTAAAAGCTGTAATCAAGAAAGCCA
ACCCACAAAGCGCGGCAGGTCCGTCTGGACTACGCTACAGTCATCTGCAG
GCTGCGCTGTGCGATGGACTGGTTGAGGATCTCGCGGCGTTCGCGACGCT
TGTTTATTCCAGCCGTGTTTTGCCTCAAGTGTTCTGGACACTGCACACGA
GCGCTAAACTTTCCGCGTTGGGGCAAAAGGCGAGACCAGTGGCGTGCGGC
GATGTATTGCGGAGAGTAACTGGCGCTGTTTTCTGCCGCCGATACGGCAG
GAAGCTGGCAGACTACTTTCAGCCCTGGGGCCAGTACGGCGTAGCAGTTT
CAGGCGGAGTAGAGATAATGGCGCTC
back to top