mRNA_F-serratus_M_contig134.2533.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2533.1
Unique NamemRNA_F-serratus_M_contig134.2533.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:549830..550544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size547
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.1939473-CDS-F-serratus_M_contig134:549829..5503041622929317.1939473-CDS-F-serratus_M_contig134:549829..550304Fucus serratus maleCDSF-serratus_M_contig134 549830..550304 -
1690962796.3701656-CDS-F-serratus_M_contig134:549829..5503041690962796.3701656-CDS-F-serratus_M_contig134:549829..550304Fucus serratus maleCDSF-serratus_M_contig134 549830..550304 -
1622929317.2088215-CDS-F-serratus_M_contig134:550473..5505441622929317.2088215-CDS-F-serratus_M_contig134:550473..550544Fucus serratus maleCDSF-serratus_M_contig134 550474..550544 -
1690962796.3797946-CDS-F-serratus_M_contig134:550473..5505441690962796.3797946-CDS-F-serratus_M_contig134:550473..550544Fucus serratus maleCDSF-serratus_M_contig134 550474..550544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2533.1prot_F-serratus_M_contig134.2533.1Fucus serratus malepolypeptideF-serratus_M_contig134 549830..550544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2533.1

>prot_F-serratus_M_contig134.2533.1 ID=prot_F-serratus_M_contig134.2533.1|Name=mRNA_F-serratus_M_contig134.2533.1|organism=Fucus serratus male|type=polypeptide|length=182bp
RACITLDTVDIALITIFSHPIRKRSLQLQATESLNVTLSRVDAAVDVSWL
EHARAISRRREDSRVQAQISFLHHLQRKSESNMANTALEHKEEATEPSTE
HDEKVGTTGKVGCLPLPHRAQRSATPPSGSLFDSRFIPARAMLALGTFSA
TCVDDVGKADLLGSGCDPYSLNKLEICGRGCG
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mRNA from alignment at F-serratus_M_contig134:549830..550544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2533.1 ID=mRNA_F-serratus_M_contig134.2533.1|Name=mRNA_F-serratus_M_contig134.2533.1|organism=Fucus serratus male|type=mRNA|length=715bp|location=Sequence derived from alignment at F-serratus_M_contig134:549830..550544- (Fucus serratus male)
CGAGCTTGTATCACTCTCGACACCGTCGACATCGCTCTTATAACCATCTT
CTCGCACCCGATCCGTAAGCGGTAAGCCACGGGAGCTTCATGGCGTCAAA
AAATGCGCTCGGCTGTAGCATTCCCCAGCATAATATTTTTGGAACAATCA
CCGCACACAATACCGCTGGTCTTGCTTCACAGAGCTTTCCGCTTGAGGGT
CGGTTCCATCTGCTAGGTTGTCACTTACACGTCGTGACAGGTCACTGCAA
CTGCAAGCGACAGAGTCACTAAACGTCACTCTGTCGAGGGTTGATGCAGC
TGTCGACGTTTCTTGGCTGGAGCACGCACGGGCGATTTCTAGACGACGAG
AAGATTCCCGCGTTCAGGCCCAAATCTCTTTCCTGCATCACCTGCAGCGT
AAGTCTGAATCCAACATGGCCAACACAGCCCTCGAACATAAGGAAGAAGC
TACTGAACCATCTACAGAGCATGATGAAAAGGTCGGCACCACAGGGAAAG
TAGGATGTTTACCCCTGCCGCACCGTGCGCAACGTTCTGCCACACCACCG
AGCGGTTCTCTCTTTGACTCAAGATTCATACCGGCGCGTGCAATGCTGGC
GTTGGGTACCTTCAGTGCCACCTGCGTAGATGATGTAGGCAAGGCCGATC
TGCTTGGTAGCGGTTGTGATCCCTATTCCCTGAACAAGCTCGAGATCTGT
GGTCGCGGTTGCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig134:549830..550544-

>mRNA_F-serratus_M_contig134.2533.1 ID=mRNA_F-serratus_M_contig134.2533.1|Name=mRNA_F-serratus_M_contig134.2533.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig134:549830..550544- (Fucus serratus male)
CGAGCTTGTATCACTCTCGACACCGTCGACATCGCTCTTATAACCATCTT
CTCGCACCCGATCCGTAAGCGCGAGCTTGTATCACTCTCGACACCGTCGA
CATCGCTCTTATAACCATCTTCTCGCACCCGATCCGTAAGCGGTCACTGC
AACTGCAAGCGACAGAGTCACTAAACGTCACTCTGTCGAGGGTTGATGCA
GCTGTCGACGTTTCTTGGCTGGAGCACGCACGGGCGATTTCTAGACGACG
AGAAGATTCCCGCGTTCAGGCCCAAATCTCTTTCCTGCATCACCTGCAGC
GTAAGTCTGAATCCAACATGGCCAACACAGCCCTCGAACATAAGGAAGAA
GCTACTGAACCATCTACAGAGCATGATGAAAAGGTCGGCACCACAGGGAA
AGTAGGATGTTTACCCCTGCCGCACCGTGCGCAACGTTCTGCCACACCAC
CGAGCGGTTCTCTCTTTGACTCAAGATTCATACCGGCGCGTGCAATGCTG
GCGTTGGGTACCTTCAGTGCCACCTGCGTAGATGATGTAGGCAAGGCCGA
TCTGCTTGGTAGCGGTTGTGATCCCTATTCCCTGAACAAGCTCGAGATCT
GTGGTCGCGGTTGCGGGGTCACTGCAACTGCAAGCGACAGAGTCACTAAA
CGTCACTCTGTCGAGGGTTGATGCAGCTGTCGACGTTTCTTGGCTGGAGC
ACGCACGGGCGATTTCTAGACGACGAGAAGATTCCCGCGTTCAGGCCCAA
ATCTCTTTCCTGCATCACCTGCAGCGTAAGTCTGAATCCAACATGGCCAA
CACAGCCCTCGAACATAAGGAAGAAGCTACTGAACCATCTACAGAGCATG
ATGAAAAGGTCGGCACCACAGGGAAAGTAGGATGTTTACCCCTGCCGCAC
CGTGCGCAACGTTCTGCCACACCACCGAGCGGTTCTCTCTTTGACTCAAG
ATTCATACCGGCGCGTGCAATGCTGGCGTTGGGTACCTTCAGTGCCACCT
GCGTAGATGATGTAGGCAAGGCCGATCTGCTTGGTAGCGGTTGTGATCCC
TATTCCCTGAACAAGCTCGAGATCTGTGGTCGCGGTTGCGGG
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