mRNA_F-serratus_M_contig1331.2482.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI) HSP 1 Score: 1111 bits (2874), Expect = 0.000e+0 Identity = 678/1312 (51.68%), Postives = 817/1312 (62.27%), Query Frame = 1
Query: 238 EPFAL-EGSFLTWVPAIP-REGHAAACARHGLETTSANIFLPDQVPPELLLMD-GRGATVLPSNSTPAPTPSASAAAQAPTQPLWSETLLTLVANGLGLALERPGGVAGCCVAGMWCGPRGCYTLAVGNSFSNHGGYVGMPSDEYSVYTCVDSRDPFSRPSGKRDDHEYSTIGGERFDSGGINRSGRRCDFCSVRSRQFFYSVPLPPT--------------PFPLQQPTIVSVGSEVAHAGGTLTVAGTGFGEELEAVRVMVGGRECRDPELCHMVCRPCGEDDRCNVDEICMVDGLAKEKVCLPICDTLTTSCPCDHVCQSKPIDPPEDSTS--INLCRPPDAGERSVYIYVYPGYLCHGSQLREKDRIQCTVPVLEWDDVETQAFGKAGGG-----------------RRKQGAMDGMSGPEGKGAGRGGEHGMRKRGPVSTASVSLSIGGLTAVWEDGISYGPKSCKAPWDCNDGDFCTLDACVEGECVH----EGFGCQAQPTDVMWRGDAYRYFQQVVDRADPAEQAAFMAEVQAGHKQSVVSRSDDLPVDHHTWDTEFPIFGTKYKDIYISPNGALFVSELHRTPLGSVSAVSLGTEAYMPLLDADWNPSDSRASSSVLVLIEDDHFTVLYQDIYLFKRSASATPSTFSTTIFPDGSLRYCYMIIGDRANWLSGVSGNTFVSPTIRQRYVRQVELIPTDENGLPSTAEFPSSDSSAPPHSRLHSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSFESRPNSGEGGSDLTSFALASDEADVDDVTHDEGDDGIMYADDNDDADGGDFDVGIEATLCRAPTVACLGSSCGKAGTEVAVLWEGFGCQAAAAAATAAAPPLNFTFACRFSGVEVPAVRILRDDEGLGWSGLDSGWAPEELRREYWGPEWAGRAESEGDEAGQGLGLLCEVPRLAWVEQGRDEAVMVPVEVVWSLSMQASASARRQVARSAGIVSVRGFSVVRSARHTDVNSHVLAFRYYRDDAEAPSCGCSSAPGEEDHKCDSCLVCGGSGTTVDCGGFCHGEAYKDVCDECVGGMTGTVGGA-CEKYS-HTNNPATEALVSLSQSIMMLVALTIMTAFLVTCLFLARAIVVRGIMALEDHRHGGERRGIFHRSRGLSPAEISSLETVKY-TGVPVAAAAXXXXKAKEEDGEENSCKSAEGAWEGLKREGGGLGDRVSGR---------------EGAGAGG----VAAAEASSRFSLVDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQNAREGLLR 3987
EPF L EGS L WV A REGHAAAC R+GL+ T +IFLPDQ P L + A ++STP S+ AA P +PLWSE L+T+VANGLGL LERPGG+AGCCV GMWCGPRGCYTLA G++FSN+GGYVG+P D+YS+YTC + P + P+ + ST + +N S D S L PT P P +PTIVSVG EV AG L V G+GFGE + VRVMVGGR+CRDPELCH+VCRPCGE+DRC DE+CM DGL+KEKVCLPICD SCPCDH C K + + S +NLCRPPDA P +LCHGS LRE++RIQCTVPVL WD ET++ +AG G RR ++G EG+G +S AS SLS+G AVWE + Y P+ C + DC+DGD C+ DACVEG CVH EG+GCQAQP WRGD YRYFQ +VDRADP EQA F+AEV+A +K S V+ +DD PV+ H W EFP++GTKY+D+YISPNGALFV L G +SAVS TEAY P+L ADWNPSDSRA+SSVLV+IE+D F+VLYQD++LFKRSASATPSTFSTT+FPDGSLRY YM IGD+A+W +GVSGN+FVSPTIR R+VRQ + I DENGLPS A PS SA P XXXXXXXXXXXXXX ++ GEGG + D A+ +D GD +V TLCRAPT+ACL +CGKAG+EV VLWEG GC+AAA+ LN TF+CR G+EVPAV + EG G + SG E WGP+W G EG G GL+CEVPRL W E G+DEAVMVPVEV+WSL QAS SA+ QV A V V G SV+ A +NSHVLAFRYYRDDAEAP CGCS++P + + CDSCLVCGG G+T DCGGFCHGEA C EC GGMTG GG C++Y + + PA AL+SLSQSIMMLVAL+IMTAFL CLFLARA+++RG++A+E RHG RR F R RGLSP+E+ LETV+Y T + + +K++ ++NSC +A+G + E +G++VS E AG G A+ + S D CAICLG FE+G+VLRKLPC H FHQ CVDEWL L+VSCPLCK++AREGL R
Sbjct: 35 EPFTLTEGSALYWVKAADTREGHAAACLRNGLDPTPPDIFLPDQTLPALQAAEQAEEAPEGAASSTPRNASSSDAATPPPARPLWSENLVTVVANGLGLELERPGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPPDDYSIYTCKEPSVPLAAPA------DSSTP------APAVNGSDPG-DAASAPGSTTAALPTLSPTAPAAEVEEKAGDGSPAPPVRPTIVSVGPEVVKAGEALMVVGSGFGEAVSDVRVMVGGRDCRDPELCHLVCRPCGEEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCLPKRFELQGEPHSMVVNLCRPPDAD---------PNFLCHGSVLREQERIQCTVPVLVWDQAETESSDRAGAGLGQKPPVRRGRHLDGDGRRGGERVEGRGVVEGEGEXXXXXXXXXXXXELSAASFSLSVGDRGAVWEGSVEYAPRDCHSAEDCDDGDACSFDACVEGSCVHTGVQEGYGCQAQPVHATWRGDTYRYFQ-IVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHNW-REFPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVMIEEDQFSVLYQDVFLFKRSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSAAA-PSEAFSATPTXXXXXXXXXXXXXXXXXXXXXD-------------------------------DASEVQGEGGGSAVTIIANGDGAEEED---------------------GDTEV----TLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAAS--------LNVTFSCRIGGLEVPAVSL----EG-GATASSSGSLAGGFEEEAWGPDWVG---GEG-----GGGLVCEVPRLEWAEAGQDEAVMVPVEVLWSLPEQASDSAKEQVRLGAAGVGVHGLSVLGDAGL--INSHVLAFRYYRDDAEAPDCGCSTSPRQTELTCDSCLVCGGDGSTKDCGGFCHGEASVSPCGECSGGMTGVTGGLWCDEYGEYLDGPAEAALLSLSQSIMMLVALSIMTAFLTMCLFLARALMLRGVLAMEGDRHGTLRRRAFSRHRGLSPSELDCLETVEYSTAIDIV--------SKDKGNDDNSC-AADGGGDSSGVEL--IGEKVSPTSSRSSSGXXXXXXXVESAGVTGGDDEAFIAQGAEAASSAD-CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAREGLRR 1230
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE) HSP 1 Score: 665 bits (1717), Expect = 6.330e-211 Identity = 405/790 (51.27%), Postives = 497/790 (62.91%), Query Frame = 1
Query: 1681 QVVDRADPAEQAAFMAEVQAGHKQSVVSRSDDLPVDHHTWDTEFPIFGTKYKDIYISPNGALFVSELHRTPLGSVSAVSLGTEAYMPLLDADWNPSDSRASSSVLVLIEDDHFTVLYQDIYLFKRSASATPSTFSTTIFPDGSLRYCYMIIGDRANWLSGVSGNTFVSPTIRQRYVRQVELIPTDENGLPSTAEFPSSDSSAPPHSRLHSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSFESRPNSGEGGSDLTSFALASDEADVDDVTHDEGDDGIMYADDNDDADGGDFDVGIEATLCRAPTVACLGSSCGKAGTEVAVLWEGFGCQAAAAAATAAAPPLNFTFACRFSGVEVPAVRILRDDEGLGWSGLDSG---WAPEELRREYWGPEWAGRAESEGDEAGQGLGLLCEVPRLAWVEQGRDEAVMVPVEVVWSLSMQASASARRQVARSAGIVSVRGFSVVRSARHTDVNSHVLAFRYYRDDAEAPSCGCSSAPGEEDHKCDSCLVCGGSGTTVDCGGFCHGEAYKDVCDECVGGMTGTVGGA-CEKY-SHTNNPATEALVSLSQSIMMLVALTIMTAFLVTCLFLARAIVVRGIMALEDHRHGGERRGIFHRSRGLSPAEISSLETVKY-TGVPVAAAAXXXXKAKEEDGEENSCKSAEGAWEGLK-----------REGGGLGDRVSGREGAG--AGGVAA--AEASSRFSLVDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQNAREGLLR 3987
Q+VDRADP EQA F+AEV+A +K S V+ +DD PV+ H W EFP++GTKY+D+YISPNGALFV L G +SAVS TEAY P+L ADWNPSDSRA+SSVLV+IE+D F+VLYQD++LFKRSASATPSTFSTT+FPDGSLRY YM IGD+A+W +GVSGN+FVSPTIR R+VRQ + I DENGLPS A P + S+ P + S S SG+ S++ + EG+ + A+ D A+ D D E TLCRAPT+ACL +CGKAG+EV VLWEG GC+AAA+ LN TF+CR G+EVPAV GLG S WA E WGP WAG G+ G GL+CEVPRL W E G++EAVMVPVEV+WSL QAS A+ QV A V+V G SV+ A +NSHVLAFRYYRDDA+AP CGCS++P + + CDSCLVCGG G+T DCGGFCHGEA C EC GGMTG GG C++Y + + PA AL+SLSQSIMMLVAL+IMTAFL CLFLARA+++RG++A+E RHG RR +F R RGLSP+E+ LETV+Y T V + +K++ ++ SC G G++ R G ++ G E AG GG A A+ + S D C+ICLG FEDG+VLRKLPC HLFHQ CVDEWL L+VSCPLCK++AREGL R
Sbjct: 18 QIVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHNW-REFPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVVIEEDQFSVLYQDVFLFKRSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSAAAPPEAFSATP----------------------------------------TLPPSPGAPVSTASNSSDSTSGDDSSEVQQWG--------------EGEAVTIIAN-GDGAEEEDADT--EVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAAS--------LNVTFSCRIGGLEVPAV-------GLGGETTTSSSGSWAGG-FEEEAWGPYWAG-----GEVGG---GLVCEVPRLEWAEAGQEEAVMVPVEVLWSLPEQASDRAKEQVRLGAAGVAVHGLSVLGDAGL--INSHVLAFRYYRDDADAPDCGCSTSPRQTELTCDSCLVCGGDGSTKDCGGFCHGEASVSPCGECSGGMTGVTGGLWCDEYREYLDGPAEAALLSLSQSIMMLVALSIMTAFLTMCLFLARALMLRGVLAMEGDRHGTLRRRVFSRHRGLSPSELDCLETVEYSTAVSIV--------SKDKGNDDISCMDGGGDSSGVELIGEKVDPSNSRSSSGSEEKRGGVESAGMMGGGDGAFIAQGAEAASSAD-CSICLGGFEDGDVLRKLPCLHLFHQKCVDEWLHLSVSCPLCKRSAREGLRR 714
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A6H5L2U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U7_9PHAE) HSP 1 Score: 325 bits (834), Expect = 1.950e-95 Identity = 181/348 (52.01%), Postives = 218/348 (62.64%), Query Frame = 1
Query: 238 EPFAL-EGSFLTWVPAIP-REGHAAACARHGLETTSANIFLPDQVPPEL-LLMDGRGATVLPSNSTPAPTPSASAAAQAPTQPLWSETLLTLVANGLGLALERPGGVAGCCVAGMWCGPRGCYTLAVGNSFSNHGGYVGMPSDEYSVYTC----------VDSRDPFSRPSGKRDDHEYSTIGGERFDSGGINRSGRRCDFCSVRSRQFFYSVPLPPTPFPLQQPTIVSVGSEVAHAGGTLTVAGTGFGEELEAVRVMVGGRECRDPELCHMVCRPCGEDDRCNVDEICMVDGLAKEKVCLPICDTLTTSCPCDHVCQSKPIDPPEDSTS--INLCRPPDAGERSVYI 1236
EP L EGS L WV A REGHAAAC R+GL+ T +IFLPDQ P L + GA ++STP S+ A P QPLWSE LLT++ANGLGL LER GG+AGCCV GMWCGPRGCYTLA G++FSN+GGYVG+P+D+YS+YTC VDS P +G H S G ++ + + + P PP +PT+VSVG EV AG L V G+GFGE + VRVMVGGR+CRDPELCH+VCRPCGE+DRC DE+CM DGL+KEKVCLPICD SCPCDH C K + + S +NLCRPPDAG+ +
Sbjct: 47 EPLTLTEGSGLYWVKAADTREGHAAACLRNGLDPTPPDIFLPDQALPALQAAVPVEGAPDGAASSTPRNASSSDATTPPPAQPLWSENLLTVIANGLGLELERSGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPADDYSIYTCKEPSVPLAAPVDSSTPAPAVNGSDPSHAASAHGSTTAALPTLSPTAPAAEV----GEEAGDGSPAPPV-----RPTVVSVGPEVVKAGEALMVVGSGFGEAVSDVRVMVGGRDCRDPELCHLVCRPCGEEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCLPKRFELQGEPHSMVVNLCRPPDAGKSQFTV 385
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A5B8MYU6_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYU6_9CHLO) HSP 1 Score: 78.6 bits (192), Expect = 1.160e-11 Identity = 33/86 (38.37%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 3787 GVAAAEASSRFSLVDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQNAREGLLRQRRRGRRRATPAGSTSAVF 4044
GV ++ +++ D C++C+ FE+G+ +R+LPC H+FH +CVDEWL+L SCP+C+++ R+ L ++ G A P+GS ++
Sbjct: 98 GVPDRDSGAKYQTTD-CSVCMEAFEEGDRIRELPCGHMFHLECVDEWLKLHPSCPICREDVRDAL-KEETAGEEEAAPSGSPTSTL 181
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A699K2M5_TANCI (E3 ubiquitin-protein ligase At1g63170-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699K2M5_TANCI) HSP 1 Score: 70.1 bits (170), Expect = 5.270e-11 Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 3835 CAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQNAREGLL 3984
C ICL + + + LR+LPC H FH+DCVD+WL++ SCPLCK E +L
Sbjct: 2 CCICLAKYANNDELRELPCTHFFHKDCVDKWLKINASCPLCKSEVGESVL 51
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A8J5KWT7_ZINOF (RING-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KWT7_ZINOF) HSP 1 Score: 70.1 bits (170), Expect = 5.720e-11 Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 3808 SSRFSLVDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQN 3966
S S + +C ICL +EDG LR+LPC+H FH C+D+WL + +CPLCK N
Sbjct: 4 SYAMSTISECCICLSPYEDGVELRELPCNHHFHCGCIDKWLHINATCPLCKFN 56
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A0D2MUW8_9CHLO (E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUW8_9CHLO) HSP 1 Score: 75.5 bits (184), Expect = 6.420e-11 Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 3829 DQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCK 3960
D+C ICLG +EDGEVL++LPC H +H +C+D WLE + CPLCK
Sbjct: 203 DECTICLGSYEDGEVLKQLPCGHSYHSECIDAWLEKSAVCPLCK 246
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A6I9YLF3_9SAUR (RING finger protein 215-like n=2 Tax=Thamnophis TaxID=34999 RepID=A0A6I9YLF3_9SAUR) HSP 1 Score: 69.7 bits (169), Expect = 1.060e-10 Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 3826 VDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQN 3966
+D CAICL F+ + LR LPC H FH+DCVD WL L +CPLCK N
Sbjct: 26 IDSCAICLDQFQRNQCLRVLPCLHEFHRDCVDPWLLLQQTCPLCKHN 72
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A2D4HI44_MICLE (RING-type domain-containing protein (Fragment) n=2 Tax=Colubroidea TaxID=34989 RepID=A0A2D4HI44_MICLE) HSP 1 Score: 71.6 bits (174), Expect = 1.570e-10 Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 3826 VDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQN 3966
+D CAICL F+ + LR LPC H FHQDCVD WL L +CPLCK N
Sbjct: 97 IDSCAICLDQFQKNQCLRVLPCLHEFHQDCVDPWLLLQQTCPLCKHN 143
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Match: A0A2D4KL61_9SAUR (RING-type domain-containing protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4KL61_9SAUR) HSP 1 Score: 70.1 bits (170), Expect = 1.580e-10 Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 3826 VDQCAICLGMFEDGEVLRKLPCDHLFHQDCVDEWLELAVSCPLCKQN 3966
+D CAICL F+ + LR LPC H FH+DCVD WL L +CPLCK N
Sbjct: 51 IDSCAICLDQFQKNQCLRVLPCLHEFHRDCVDPWLLLQQTCPLCKHN 97 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1331.2482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1331.2482.1 >prot_F-serratus_M_contig1331.2482.1 ID=prot_F-serratus_M_contig1331.2482.1|Name=mRNA_F-serratus_M_contig1331.2482.1|organism=Fucus serratus male|type=polypeptide|length=1502bp MVYARAAAVSSLLALGGHTSISFRARASGVEPFALEGSFLTWVPAIPREGback to top mRNA from alignment at F-serratus_M_contig1331:190721..220580- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1331.2482.1 ID=mRNA_F-serratus_M_contig1331.2482.1|Name=mRNA_F-serratus_M_contig1331.2482.1|organism=Fucus serratus male|type=mRNA|length=29860bp|location=Sequence derived from alignment at F-serratus_M_contig1331:190721..220580- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1331:190721..220580- >mRNA_F-serratus_M_contig1331.2482.1 ID=mRNA_F-serratus_M_contig1331.2482.1|Name=mRNA_F-serratus_M_contig1331.2482.1|organism=Fucus serratus male|type=CDS|length=9012bp|location=Sequence derived from alignment at F-serratus_M_contig1331:190721..220580- (Fucus serratus male)back to top |