mRNA_F-serratus_M_contig1326.2418.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1326.2418.1
Unique NamemRNA_F-serratus_M_contig1326.2418.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1326.2418.1 vs. uniprot
Match: D8LJ14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ14_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.560e-54
Identity = 94/156 (60.26%), Postives = 117/156 (75.00%), Query Frame = 2 
Query:   80 MTIYGIGGISGSGKTYFRSTCSGLRESTHVDIADVYERSVAEGRSNLHWRIALKRFVSIVRDLLLRDNTRDIVLEASFRPEGLQRKAIERLAREYGVDVRWGWASTSRAECRRRVSNGVGGNDSLERRKKRLEFIKIADPFFFRERTAESLQTLAS 547
            MTIYGIGG+SG+GKT+FR++C G R+   +DIADVYE S+A+G  ++HWR AL+ F   VR  L  D + DIVLEA FRP+G QR+AIE +AR +GVDV WGWA   RA+C  RVSN  GG+DS ERR+KRL FIK A+  FFRER  ESL +LA+
Sbjct:    1 MTIYGIGGVSGTGKTHFRTSCEGFRDVRVLDIADVYEESLAQGHPDMHWRTALQVFQGRVRGWLEEDRSSDIVLEAFFRPDGAQRQAIEAIARGFGVDVIWGWAWAPRADCLSRVSNERGGHDSSERRQKRLSFIKTAESSFFRERPEESLASLAT 156
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1326.2418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ14_ECTSI1.560e-5460.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1326contigF-serratus_M_contig1326:77272..79317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_002290.1
Exons3
Model size1061
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1326.2418.1prot_F-serratus_M_contig1326.2418.1Fucus serratus malepolypeptideF-serratus_M_contig1326 78153..78824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.3909051-UTR-F-serratus_M_contig1326:77271..773251622929292.3909051-UTR-F-serratus_M_contig1326:77271..77325Fucus serratus maleUTRF-serratus_M_contig1326 77272..77325 +
1690962786.8138323-UTR-F-serratus_M_contig1326:77271..773251690962786.8138323-UTR-F-serratus_M_contig1326:77271..77325Fucus serratus maleUTRF-serratus_M_contig1326 77272..77325 +
1622929292.4058847-UTR-F-serratus_M_contig1326:78127..781521622929292.4058847-UTR-F-serratus_M_contig1326:78127..78152Fucus serratus maleUTRF-serratus_M_contig1326 78128..78152 +
1690962786.8247929-UTR-F-serratus_M_contig1326:78127..781521690962786.8247929-UTR-F-serratus_M_contig1326:78127..78152Fucus serratus maleUTRF-serratus_M_contig1326 78128..78152 +
1622929292.4615905-UTR-F-serratus_M_contig1326:78824..793171622929292.4615905-UTR-F-serratus_M_contig1326:78824..79317Fucus serratus maleUTRF-serratus_M_contig1326 78825..79317 +
1690962786.851964-UTR-F-serratus_M_contig1326:78824..793171690962786.851964-UTR-F-serratus_M_contig1326:78824..79317Fucus serratus maleUTRF-serratus_M_contig1326 78825..79317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.4228024-CDS-F-serratus_M_contig1326:78152..784511622929292.4228024-CDS-F-serratus_M_contig1326:78152..78451Fucus serratus maleCDSF-serratus_M_contig1326 78153..78451 +
1690962786.8340206-CDS-F-serratus_M_contig1326:78152..784511690962786.8340206-CDS-F-serratus_M_contig1326:78152..78451Fucus serratus maleCDSF-serratus_M_contig1326 78153..78451 +
1622929292.4388046-CDS-F-serratus_M_contig1326:78634..788241622929292.4388046-CDS-F-serratus_M_contig1326:78634..78824Fucus serratus maleCDSF-serratus_M_contig1326 78635..78824 +
1690962786.8429465-CDS-F-serratus_M_contig1326:78634..788241690962786.8429465-CDS-F-serratus_M_contig1326:78634..78824Fucus serratus maleCDSF-serratus_M_contig1326 78635..78824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1326.2418.1

>prot_F-serratus_M_contig1326.2418.1 ID=prot_F-serratus_M_contig1326.2418.1|Name=mRNA_F-serratus_M_contig1326.2418.1|organism=Fucus serratus male|type=polypeptide|length=163bp
MTIYGIGGISGSGKTYFRSTCSGLRESTHVDIADVYERSVAEGRSNLHWR
IALKRFVSIVRDLLLRDNTRDIVLEASFRPEGLQRKAIERLAREYGVDVR
WGWASTSRAECRRRVSNGVGGNDSLERRKKRLEFIKIADPFFFRERTAES
LQTLASALAKTA*
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mRNA from alignment at F-serratus_M_contig1326:77272..79317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1326.2418.1 ID=mRNA_F-serratus_M_contig1326.2418.1|Name=mRNA_F-serratus_M_contig1326.2418.1|organism=Fucus serratus male|type=mRNA|length=2046bp|location=Sequence derived from alignment at F-serratus_M_contig1326:77272..79317+ (Fucus serratus male)
ACGACTCCAACGTCGATCACGTCAGGAGGGAAGCCTCATCGGTGGTCACA
ACAGGTGCAGATATTGTCCTAGCCGTATGAAGTAGATCAATTGTGAGGAT
GCGGGACGATGTCCTCTGAAGATGGCACAGAAAAAGTACGGCTTAAGATC
TGTCGGGACTGTCGTTTGCCCTCCAAACTCCATGGATTTGAGCGGTTCAC
CTGTACCGCGTGGTTGTTCCAAACGTACTCAACTCTTCCACGAGTGCGTA
GTCTCAAGTTTCACTCCCTTAGCCAGCTGCTGTAGCATGACGGGAGGTCT
TATAGCCGGCGATTTATCCCCAAGGTTGCTGTCCTAGTCAGCACTGGACA
GTGATTTCATCCCATGCGTATCACCTTTATCTCAAAGGATAAGATTTCCT
CTGATTTCACACGGAGCGAGTGATTCCGTGGTTTACATAGTTTGCATTAC
GTACCTGTACATGTGTATGGTCACACATATAGCAAGAGTATGGATCAACC
TGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTAAACAGAGAAAATAAAT
CCTGCTCGTGGTCATTGCGTACCGATGGCGTTCACTGCCTCCGCCGGCAC
AGGGCCAGCATAACTTCGCAGGTCACTATGGACCAATTAATATACGAGAA
AGGAACATGTATTCCTTTGATTACCATCTTGGACCTAGCCCGTAGATCGA
TTGGCTGCAAAAATCCCCTTGCCATGCAGTTTCATCCCTATAATAGTGCT
CTACGCATGGTCATGAAGTCGGTTCCATAAGTTGGAAGAGGAACGAGCAC
GGACACCGCCGTGGTTTTTATAATTTTTTAAACAACTGTATACTACGCTT
GAGCAGGAGAGCAGCGCACGAGACCCTTATTATGACGATCTACGGTATCG
GTGGGATCTCGGGCTCGGGAAAGACATACTTCCGCAGTACCTGCTCAGGT
CTGAGAGAAAGCACGCACGTGGATATCGCGGACGTTTACGAACGTTCGGT
TGCCGAAGGGCGCTCAAATCTCCACTGGAGGATCGCACTGAAGCGCTTCG
TGTCAATCGTCAGGGATCTGTTGTTAAGGGATAACACTCGCGACATAGTC
CTAGAGGCGTCCTTCCGCCCAGAAGGTCTGCAGCGGAAGGCGATCGAGCG
TCTTGCGCGAGAGTATGGGGTAGATGTGAGGTGAGGACATATATGGTTAG
TAATCATCATTCGAATCACAGTCTACAAGTAAATAGTGGATATGCTGCCG
TAGCTTGCTGCTGGCAATTTTTTTAATTACAATCAGCAGTTTTGACTTTT
GGGGATTCTGCGCAGGCCGGCTGCAGGACCCGCTCAAACCTCCCGCCTTT
TGTGTCTGCTCAGGTGGGGATGGGCATCTACCTCACGCGCAGAATGCCGT
CGTCGCGTGTCGAACGGGGTAGGCGGTAATGACTCTCTGGAAAGGAGGAA
GAAACGCCTCGAATTCATCAAGATCGCCGATCCGTTCTTTTTTCGCGAGA
GGACAGCGGAAAGCTTGCAAACGTTGGCATCAGCTCTGGCGAAGACTGCA
TGAGTTCACAAGGGCGATCCTCTGACTGGATAGCTTCTTGTCACCGCATT
ACTAGGTTCTACACGTGCGGGAAGCGAGACAAACTCCCTCGTGATTCCGA
CAAAACTCATTAGTGGCTCGCGTCCGTACGTTCAACCGCGACTTGCGACA
AATCGTGTTGCCTTGTGAGCTAACACCTGTTATTCCTTTTCCACCTCGTC
AACCAACATTATCCTTTTGTCCCGCGGATCCAATTAAACTTCATTGTAGC
TAGTCTCAGGACGGTGGACTTGTTGCTCGCATGCCCGCTCTCCCGGGAAA
CATTTCTGACGAGATCACAAATGATCTTAGGCACGCTGATTCGAGTGAGG
GTTATTGACACAAAACACTTGGAAGCGAAGTAAAGCGCCTCTTTTTCTTT
CATCAACCAGTCAAGCGCCCGCTGCTTCAAGATAGCTACACCATCCTCCG
GTTTTCATCCTATGGAGATACTTCGAGATAGCAAGAGTAATCGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1326:77272..79317+

>mRNA_F-serratus_M_contig1326.2418.1 ID=mRNA_F-serratus_M_contig1326.2418.1|Name=mRNA_F-serratus_M_contig1326.2418.1|organism=Fucus serratus male|type=CDS|length=978bp|location=Sequence derived from alignment at F-serratus_M_contig1326:77272..79317+ (Fucus serratus male)
ATGACGATCTACGGTATCGGTGGGATCTCGGGCTCGGGAAAGACATACTT
CCGCAGTACCTGCTCAGGTCTGAGAGAAAGCACGCACGTGGATATCGCGG
ACGTTTACGAACGTTCGGTTGCCGAAGGGCGCTCAAATCTCCACTGGAGG
ATCGCACTGAAGCGCTTCGTGTCAATCGTCAGGGATCTGTTGTTAAGGGA
TAACACTCGCGACATAGTCCTAGAGGCGTCCTTCCGCCCAGAAGGTCTGC
AGCGGAAGGCGATCGAGCGTCTTGCGCGAGAGTATGGGGTAGATGTGAGA
TGACGATCTACGGTATCGGTGGGATCTCGGGCTCGGGAAAGACATACTTC
CGCAGTACCTGCTCAGGTCTGAGAGAAAGCACGCACGTGGATATCGCGGA
CGTTTACGAACGTTCGGTTGCCGAAGGGCGCTCAAATCTCCACTGGAGGA
TCGCACTGAAGCGCTTCGTGTCAATCGTCAGGGATCTGTTGTTAAGGGAT
AACACTCGCGACATAGTCCTAGAGGCGTCCTTCCGCCCAGAAGGTCTGCA
GCGGAAGGCGATCGAGCGTCTTGCGCGAGAGTATGGGGTAGATGTGAGGT
GGGGATGGGCATCTACCTCACGCGCAGAATGCCGTCGTCGCGTGTCGAAC
GGGGTAGGCGGTAATGACTCTCTGGAAAGGAGGAAGAAACGCCTCGAATT
CATCAAGATCGCCGATCCGTTCTTTTTTCGCGAGAGGACAGCGGAAAGCT
TGCAAACGTTGGCATCAGCTCTGGCGAAGACTGCATGAGTGGGGATGGGC
ATCTACCTCACGCGCAGAATGCCGTCGTCGCGTGTCGAACGGGGTAGGCG
GTAATGACTCTCTGGAAAGGAGGAAGAAACGCCTCGAATTCATCAAGATC
GCCGATCCGTTCTTTTTTCGCGAGAGGACAGCGGAAAGCTTGCAAACGTT
GGCATCAGCTCTGGCGAAGACTGCATGA
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