mRNA_F-serratus_M_contig131.2329.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig131.2329.1
Unique NamemRNA_F-serratus_M_contig131.2329.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig131contigF-serratus_M_contig131:671662..672714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.6411192-CDS-F-serratus_M_contig131:671661..6718001622929267.6411192-CDS-F-serratus_M_contig131:671661..671800Fucus serratus maleCDSF-serratus_M_contig131 671662..671800 +
1690962776.4658632-CDS-F-serratus_M_contig131:671661..6718001690962776.4658632-CDS-F-serratus_M_contig131:671661..671800Fucus serratus maleCDSF-serratus_M_contig131 671662..671800 +
1622929267.652455-CDS-F-serratus_M_contig131:672598..6727141622929267.652455-CDS-F-serratus_M_contig131:672598..672714Fucus serratus maleCDSF-serratus_M_contig131 672599..672714 +
1690962776.4785573-CDS-F-serratus_M_contig131:672598..6727141690962776.4785573-CDS-F-serratus_M_contig131:672598..672714Fucus serratus maleCDSF-serratus_M_contig131 672599..672714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig131.2329.1prot_F-serratus_M_contig131.2329.1Fucus serratus malepolypeptideF-serratus_M_contig131 671662..672714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig131.2329.1

>prot_F-serratus_M_contig131.2329.1 ID=prot_F-serratus_M_contig131.2329.1|Name=mRNA_F-serratus_M_contig131.2329.1|organism=Fucus serratus male|type=polypeptide|length=85bp
HQAQAAGGAGVAKRKRRSQEGVDAILDLGPRGGDSGDEEEDSPDPFGDDV
YNVQAQPRDEDTRVLDEKKEPVAAAATTAEAERND
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mRNA from alignment at F-serratus_M_contig131:671662..672714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig131.2329.1 ID=mRNA_F-serratus_M_contig131.2329.1|Name=mRNA_F-serratus_M_contig131.2329.1|organism=Fucus serratus male|type=mRNA|length=1053bp|location=Sequence derived from alignment at F-serratus_M_contig131:671662..672714+ (Fucus serratus male)
CATCAAGCTCAGGCGGCAGGCGGTGCAGGAGTCGCCAAGCGCAAGCGCCG
ATCGCAGGAGGGGGTCGATGCGATCCTGGACCTTGGGCCTCGCGGAGGCG
ATTCGGGTGACGAGGAAGAAGACAGCCCGGATCCATTCGGTGAGCACAGC
CGTTTCATCGTCGCTGCAGCGAAGCCGTTTGCTGCGCCGAAAGGCGCCAC
CCCGCCCCGCAAACAAGATTCCTGTTGGTTTCCCCCCGTGTATTTTTGTT
TTAAAAATTGAACCCGACACGAGTACCAGTGATTATTTTGTCTTGTGCCT
GTGTTTCCTGTCGCCCACCCCCACCATCGGTTCTCTGTGTTGGTGCAGTC
AGCACAAACGACGAGAGCGACTATACCACAAGCCGTTTGTTGTTTTTGAG
TCTTTTTATCGGGTCGCGTACGGCGTGCGTGCATGCCCCTCCCTGAATCG
GTTGCAGACGTGCGTGCGCGTGTCGGAATCTGAGCCGCGTCGCTTCAGGC
GGCCCTTCGTCTCCTTCTGAAAAAGATCGGAGGCTCATCGTCTCTCGACT
GCTGTATATCTCCTGTAAATTCCAGTTTGTTGTAGTTCTATAGTAAAAAC
CCTTCTCCTATTTTCTACATGCACCCTCTGATACTTAGGAGGGTCTCTAC
TCCCCTACGTTAAAGTAAGTATTTGACTATACTTGAAGGCGAAGGGAGGG
AAAAGGAGCTCGTTTCTTCTTTCAATACGTAAACATGAGCTTCTTTAAAA
CTGCCTAGTTGTATATATATTTTTGGAGGCTTTTTTCCGGGGGGAGGAGG
GGAAAAGGGGCAGTATGCCACGGATAGTTTGTACGTCTGATTAATTTTCG
GGGGGAAAGGGGGGGGGGAGAAGATAAAACGGGTTTCCAATTCACGCCCT
TCCCTTCTGTTGCCCATTCGCCCTCCGTCCAACTCAGGCGACGACGTATA
CAACGTCCAGGCGCAGCCCCGAGACGAAGACACGAGAGTTCTGGACGAGA
AGAAGGAGCCGGTTGCGGCGGCGGCGACCACGGCGGAAGCGGAACGAAAC
GAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig131:671662..672714+

>mRNA_F-serratus_M_contig131.2329.1 ID=mRNA_F-serratus_M_contig131.2329.1|Name=mRNA_F-serratus_M_contig131.2329.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig131:671662..672714+ (Fucus serratus male)
CATCAAGCTCAGGCGGCAGGCGGTGCAGGAGTCGCCAAGCGCAAGCGCCG
ATCGCAGGAGGGGGTCGATGCGATCCTGGACCTTGGGCCTCGCGGAGGCG
ATTCGGGTGACGAGGAAGAAGACAGCCCGGATCCATTCGCATCAAGCTCA
GGCGGCAGGCGGTGCAGGAGTCGCCAAGCGCAAGCGCCGATCGCAGGAGG
GGGTCGATGCGATCCTGGACCTTGGGCCTCGCGGAGGCGATTCGGGTGAC
GAGGAAGAAGACAGCCCGGATCCATTCGGCGACGACGTATACAACGTCCA
GGCGCAGCCCCGAGACGAAGACACGAGAGTTCTGGACGAGAAGAAGGAGC
CGGTTGCGGCGGCGGCGACCACGGCGGAAGCGGAACGAAACGATGCGACG
ACGTATACAACGTCCAGGCGCAGCCCCGAGACGAAGACACGAGAGTTCTG
GACGAGAAGAAGGAGCCGGTTGCGGCGGCGGCGACCACGGCGGAAGCGGA
ACGAAACGAT
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