mRNA_F-serratus_M_contig1305.2296.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1305.2296.1
Unique NamemRNA_F-serratus_M_contig1305.2296.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: A0A0U1WNN6_SARFS (Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A0U1WNN6_SARFS)

HSP 1 Score: 280 bits (715), Expect = 2.260e-91
Identity = 135/142 (95.07%), Postives = 139/142 (97.89%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA FFF+LV+AHIFRGLYYGSYMEPRQHLWWSG +IYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSL+YLLPFLI
Sbjct:   49 FLAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGASFFFMLVYAHIFRGLYYGSYMEPRQHLWWSGTLIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLHYLLPFLI 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: E6ZES8_ECTSI (Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES8_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 3.900e-87
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHYA ETHYAFSSVEHIMRDVKSGWLIRYMHANGA FFFI+V+AHIFRGLYYGSYMEPRQ LWWSGA+IYVLMMATAFIGYVLPWGQMSFWGATVITS FSI P IGKEVVMW+WGGFTVGNPTLNRF+SL+YLLPF+I
Sbjct:   49 FLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASFFFIVVYAHIFRGLYYGSYMEPRQQLWWSGALIYVLMMATAFIGYVLPWGQMSFWGATVITSLFSIFPFIGKEVVMWLWGGFTVGNPTLNRFFSLHYLLPFII 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: D0IPB5_SACJA (Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepID=D0IPB5_SACJA)

HSP 1 Score: 267 bits (683), Expect = 6.600e-87
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHYA ETHYAFSSVEHIMRDVKSGWLIRYMHANGA FFFI+V+AHIFRGLYYGSYMEPRQ LWWSG VIYVLMMATAFIGYVLPWGQMSFWGATVITS FSI P IGKEVVMW+WGGFTVGNPTLNRF+SL+YLLPF+I
Sbjct:   49 FLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASFFFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYVLMMATAFIGYVLPWGQMSFWGATVITSLFSIFPFIGKEVVMWLWGGFTVGNPTLNRFFSLHYLLPFII 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: A0A8F0FCD4_9PHAE (Cytochrome b n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0FCD4_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 3.480e-84
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHYA ETHYAFSSVEHIMRDV++GWLIRYMHANGA FFFI+V+AHIFRGLYYGSYM PR  LWWSG VIYVLMMATAFIGYVLPWGQMSFWGATVITS FSI P IGKEVVMW+WGGFTVGNPTLNRF+SL+YLLPF+I
Sbjct:   49 FLAMHYAGETHYAFSSVEHIMRDVENGWLIRYMHANGASFFFIVVYAHIFRGLYYGSYMAPRHQLWWSGGVIYVLMMATAFIGYVLPWGQMSFWGATVITSLFSIFPFIGKEVVMWLWGGFTVGNPTLNRFFSLHYLLPFII 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: Q2TUA7_DICDH (Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID=Q2TUA7_DICDH)

HSP 1 Score: 257 bits (657), Expect = 4.720e-83
Identity = 118/142 (83.10%), Postives = 135/142 (95.07%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHY SETHYAF+S+EHIMRDV +GWLIRY+HANGA FFFI+V+AHIFRGLYYGS+MEPRQ LWWSGA+IYVLMMATAFIGYVLPWGQMSFWG TVIT+ F++IPVIGK++VMWIWGG+TVGNPTLNRF+SL+Y+LPFLI
Sbjct:   49 FLAMHYVSETHYAFASIEHIMRDVDNGWLIRYLHANGASFFFIVVYAHIFRGLYYGSFMEPRQSLWWSGAIIYVLMMATAFIGYVLPWGQMSFWGVTVITNLFTVIPVIGKDIVMWIWGGYTVGNPTLNRFFSLHYVLPFLI 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: A0A8E8PEC1_9PHAE (Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEC1_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.470e-82
Identity = 119/142 (83.80%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHY S+THYAFSS+EHIMRDVK GWLIRY+H+NGA  FFI+V+AHIFRGLY+GS+MEPRQ LWWSG VIY+LMMATAFIGYVLPWGQMSFWGATVITS FSI+P +G+EVVMWIWGGFTVGNPTLNRFYSL+Y LPFLI
Sbjct:   49 FLAMHYVSDTHYAFSSIEHIMRDVKGGWLIRYIHSNGASLFFIVVYAHIFRGLYFGSFMEPRQQLWWSGGVIYILMMATAFIGYVLPWGQMSFWGATVITSLFSILPSVGREVVMWIWGGFTVGNPTLNRFYSLHYFLPFLI 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: A0A0A7LKY8_SACLA (Cytochrome b n=14 Tax=Phaeophyceae TaxID=2870 RepID=A0A0A7LKY8_SACLA)

HSP 1 Score: 254 bits (649), Expect = 9.100e-82
Identity = 124/142 (87.32%), Postives = 130/142 (91.55%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHYA ETHYAFSSVEHIMRDVKSGWLIRYMHANGA FFFI+V+AHIFRGLYYGSYMEPRQ LWWSG VIYVLMMATAFIGYVL  GQMSFWGATVITS FSI P IGKEVVMW+WGGFT  NPTLNRF+SL+YLLPF+I
Sbjct:   49 FLAMHYAGETHYAFSSVEHIMRDVKSGWLIRYMHANGASFFFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYVLMMATAFIGYVLALGQMSFWGATVITSLFSIFPFIGKEVVMWLWGGFTAVNPTLNRFFSLHYLLPFII 190
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: A0A7S6UA51_9STRA (Cytochrome b n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA51_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.900e-72
Identity = 106/142 (74.65%), Postives = 125/142 (88.03%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHY  E H AFSS+EHIMRDV +GWL+RY+HANGA FFFI+V+ HIFRGLYYGSY+EPRQ LW SG +I++LMMATAF+GYVLPWGQMSFWGATVIT+ FS IPV G  +V W+WGGF+VGNPTLNRF+SL+YL+PF+I
Sbjct:   51 FLAMHYTPEIHLAFSSLEHIMRDVNNGWLVRYIHANGASFFFIVVYCHIFRGLYYGSYIEPRQELWCSGVIIFLLMMATAFMGYVLPWGQMSFWGATVITNLFSAIPVAGDAIVQWLWGGFSVGNPTLNRFFSLHYLMPFVI 192
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: E5DIL3_9STRA (Cytochrome b (Fragment) n=2 Tax=Synura TaxID=2991 RepID=E5DIL3_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.550e-70
Identity = 105/142 (73.94%), Postives = 122/142 (85.92%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHY   T YAF+SVEHIMR V +GWLIRYMHANGA FFFI+V+ HIFRGLYYGSY+ PR  LW SG +I++LMMATAF+GYVLPWGQMSFWGATVIT+ FS IP++GK +V W+WGGF+V N TLNRF+SL+YLLPFLI
Sbjct:    5 FLAMHYTPHTEYAFNSVEHIMRHVNNGWLIRYMHANGASFFFIVVYCHIFRGLYYGSYIYPRGLLWGSGVIIFLLMMATAFMGYVLPWGQMSFWGATVITNLFSAIPLVGKAIVEWLWGGFSVDNATLNRFFSLHYLLPFLI 146
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BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Match: A0A3Q8H9T3_9STRA (Cytochrome b (Fragment) n=22 Tax=Pythiaceae TaxID=4782 RepID=A0A3Q8H9T3_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.740e-70
Identity = 103/142 (72.54%), Postives = 122/142 (85.92%), Query Frame = 1 
Query:    1 FFAMHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGA-FFFILVHAHIFRGLYYGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFSIIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI 423
            F AMHY      AF+SVEHIMRDV +GWLIRY HANGA FFFI+V+ HIFRGLYYGSY+ PR++LW SG VI++LMMATAF+GYVLPWGQMSFWGATVIT+ FS +PVIGK++V W+WGGF V NPTLNRF+SL++ LPF+I
Sbjct:   14 FLAMHYTPHIDLAFNSVEHIMRDVNNGWLIRYTHANGASFFFIVVYVHIFRGLYYGSYITPRENLWCSGVVIFILMMATAFMGYVLPWGQMSFWGATVITNLFSAVPVIGKDIVDWLWGGFAVDNPTLNRFFSLHFTLPFVI 155
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1305.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1WNN6_SARFS2.260e-9195.07Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A... [more]
E6ZES8_ECTSI3.900e-8790.14Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepI... [more]
D0IPB5_SACJA6.600e-8790.14Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A8F0FCD4_9PHAE3.480e-8487.32Cytochrome b n=1 Tax=Laminaria ephemera TaxID=3093... [more]
Q2TUA7_DICDH4.720e-8383.10Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID... [more]
A0A8E8PEC1_9PHAE5.470e-8283.80Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=224924... [more]
A0A0A7LKY8_SACLA9.100e-8287.32Cytochrome b n=14 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A7S6UA51_9STRA1.900e-7274.65Cytochrome b n=1 Tax=Schizocladia ischiensis TaxID... [more]
E5DIL3_9STRA1.550e-7073.94Cytochrome b (Fragment) n=2 Tax=Synura TaxID=2991 ... [more]
A0A3Q8H9T3_9STRA6.740e-7072.54Cytochrome b (Fragment) n=22 Tax=Pythiaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1305contigF-serratus_M_contig1305:6587..7009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score209.5
Seed ortholog evalue9.7e-52
Seed eggNOG ortholog1120983.KB894575_gene496
Preferred namepetB
KEGG koko:K00410,ko:K00412,ko:K02635,ko:K02637
KEGG Pathwayko00190,ko00195,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map00195,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152,M00162
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
EggNOG OGs1JNKN@119043,1MV97@1224,2TSZ3@28211,COG1290@1,COG1290@2
COG Functional cat.C
Best tax levelRhodobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko03029
Exons1
Model size423
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.5423956-UTR-F-serratus_M_contig1305:6586..65951622929263.5423956-UTR-F-serratus_M_contig1305:6586..6595Fucus serratus maleUTRF-serratus_M_contig1305 6587..6595 +
1690962774.530036-UTR-F-serratus_M_contig1305:6586..65951690962774.530036-UTR-F-serratus_M_contig1305:6586..6595Fucus serratus maleUTRF-serratus_M_contig1305 6587..6595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.5558493-CDS-F-serratus_M_contig1305:6595..70091622929263.5558493-CDS-F-serratus_M_contig1305:6595..7009Fucus serratus maleCDSF-serratus_M_contig1305 6596..7009 +
1690962774.5408049-CDS-F-serratus_M_contig1305:6595..70091690962774.5408049-CDS-F-serratus_M_contig1305:6595..7009Fucus serratus maleCDSF-serratus_M_contig1305 6596..7009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1305.2296.1prot_F-serratus_M_contig1305.2296.1Fucus serratus malepolypeptideF-serratus_M_contig1305 6596..7009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1305.2296.1

>prot_F-serratus_M_contig1305.2296.1 ID=prot_F-serratus_M_contig1305.2296.1|Name=mRNA_F-serratus_M_contig1305.2296.1|organism=Fucus serratus male|type=polypeptide|length=138bp
MHYASETHYAFSSVEHIMRDVKSGWLIRYMHANGAFFFILVHAHIFRGLY
YGSYMEPRQHLWWSGAVIYVLMMATAFIGYVLPWGQMSFWGATVITSFFS
IIPVIGKEVVMWIWGGFTVGNPTLNRFYSLYYLLPFLI
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mRNA from alignment at F-serratus_M_contig1305:6587..7009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1305.2296.1 ID=mRNA_F-serratus_M_contig1305.2296.1|Name=mRNA_F-serratus_M_contig1305.2296.1|organism=Fucus serratus male|type=mRNA|length=423bp|location=Sequence derived from alignment at F-serratus_M_contig1305:6587..7009+ (Fucus serratus male)
TTTTTCGCGATGCATTATGCAAGTGAAACCCATTACGCTTTCTCTAGTGT
TGAGCATATAATGAGAGATGTAAAAAGTGGTTGGCTTATTCGTTATATGC
ACGCGAATGGTGCTTTTTTTTTTATCCTAGTGCATGCGCATATTTTTAGA
GGTTTGTATTATGGTTCTTATATGGAGCCCCGCCAACATTTATGGTGGTC
TGGTGCCGTTATTTACGTTTTAATGATGGCAACAGCTTTTATAGGTTACG
TTTTACCATGGGGTCAAATGAGTTTTTGGGGTGCAACTGTTATAACGAGT
TTTTTTTCCATTATTCCAGTAATAGGAAAAGAGGTTGTTATGTGGATATG
GGGAGGATTTACTGTAGGAAATCCTACTTTAAACAGGTTTTATAGCTTAT
ATTATTTATTACCTTTTTTAATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1305:6587..7009+

>mRNA_F-serratus_M_contig1305.2296.1 ID=mRNA_F-serratus_M_contig1305.2296.1|Name=mRNA_F-serratus_M_contig1305.2296.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig1305:6587..7009+ (Fucus serratus male)
ATGCATTATGCAAGTGAAACCCATTACGCTTTCTCTAGTGTTGAGCATAT
AATGAGAGATGTAAAAAGTGGTTGGCTTATTCGTTATATGCACGCGAATG
GTGCTTTTTTTTTTATCCTAGTGCATGCGCATATTTTTAGAGGTTTGTAT
TATGGTTCTTATATGGAGCCCCGCCAACATTTATGGTGGTCTGGTGCCGT
TATTTACGTTTTAATGATGGCAACAGCTTTTATAGGTTACGTTTTACCAT
GGGGTCAAATGAGTTTTTGGGGTGCAACTGTTATAACGAGTTTTTTTTCC
ATTATTCCAGTAATAGGAAAAGAGGTTGTTATGTGGATATGGGGAGGATT
TACTGTAGGAAATCCTACTTTAAACAGGTTTTATAGCTTATATTATTTAT
TACCTTTTTTAATAATGCATTATGCAAGTGAAACCCATTACGCTTTCTCT
AGTGTTGAGCATATAATGAGAGATGTAAAAAGTGGTTGGCTTATTCGTTA
TATGCACGCGAATGGTGCTTTTTTTTTTATCCTAGTGCATGCGCATATTT
TTAGAGGTTTGTATTATGGTTCTTATATGGAGCCCCGCCAACATTTATGG
TGGTCTGGTGCCGTTATTTACGTTTTAATGATGGCAACAGCTTTTATAGG
TTACGTTTTACCATGGGGTCAAATGAGTTTTTGGGGTGCAACTGTTATAA
CGAGTTTTTTTTCCATTATTCCAGTAATAGGAAAAGAGGTTGTTATGTGG
ATATGGGGAGGATTTACTGTAGGAAATCCTACTTTAAACAGGTTTTATAG
CTTATATTATTTATTACCTTTTTTAATA
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