mRNA_F-serratus_M_contig1300.2273.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1300.2273.1
Unique NamemRNA_F-serratus_M_contig1300.2273.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: D7FYJ3_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ3_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.080e-41
Identity = 74/153 (48.37%), Postives = 97/153 (63.40%), Query Frame = 1
Query:   13 VVLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            ++ FWQPPSVFSQW  S   +D  +YSC EQ+MM  KA+LF D+S++  I+ T  PREHK LGR  S   ++ +       I  R N AKF+QN  +   LL TG++ L EASPYD +WGI LRA +  A +P  WRG NLLG  L++VR  +
Sbjct:   60 LLFFWQPPSVFSQWTPSVFVVDNVQYSCAEQYMMAEKAKLFGDNSSWQKIMATPSPREHKDLGRGVSGYDQN-VWDQHKMRIVARGNYAKFTQNEMMGQRLLDTGEKLLAEASPYDRVWGIGLRADNPAARTPSSWRGQNLLGDILQEVRTRM 211          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A6J8EGL8_MYTCO (NADAR domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8EGL8_MYTCO)

HSP 1 Score: 132 bits (333), Expect = 1.120e-35
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   16 VLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSST--PLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            VLFWQ  SVFSQW HS  T++   ++C EQFMM  K RL DD      ++T+ DP E K LGRQ++        L  ++ + I  + N+AKFSQN  L+  LL+TG++ L EASP+D  WGI L A +  A +   WRG+NLLG  L  VR  L
Sbjct:   81 VLFWQKGSVFSQWHHSVFTVEELTFNCAEQFMMYHKTRLCDDEKLTERVMTSTDPEEQKDLGRQAAKLPSFNRPLWNSKCEEIVKQGNIAKFSQNPKLKAVLLNTGNKTLAEASPFDEKWGIGLAADNPDALNKEKWRGTNLLGTILMDVRGEL 234          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A5S9INE9_9BACT (NADAR domain-containing protein n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9INE9_9BACT)

HSP 1 Score: 130 bits (328), Expect = 1.380e-35
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 1
Query:    1 MDDKVVLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            + D  VLFW+PP  F QW  S   +D   Y+C EQ+MM  KARLF D      I+ +D PRE K LG++         +  R   I  R N+AKFSQN DL+  LL T +R L EASP D IWGI   A+   A     W G NLLG+ L++VR  L
Sbjct:   25 VSDSFVLFWKPPCAFGQWTLSPFEVDGVHYNCAEQYMMAEKARLFQDEKNEKLIMESDCPREQKKLGKRVRGFKEKTWLEERFA-IVFRGNMAKFSQNLDLKQALLETENRTLVEASPLDKIWGIGFAANQEEAYDETKWNGLNLLGKVLQEVRQEL 180          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: UPI00148A748D (uncharacterized protein LOC105329780 isoform X1 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A748D)

HSP 1 Score: 135 bits (340), Expect = 1.110e-34
Identity = 73/155 (47.10%), Postives = 91/155 (58.71%), Query Frame = 1
Query:    7 DKVVLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            DK   FWQ  SVFSQW  S+  +D  EYSC EQ+MM  KA L DD  T   I+  D P E K  GR      ++ L       I  + N+AKFSQN+DL++TL  T  + L EASPYD +WGI LR +D RA +   W G NLLG+ L +VR+ L
Sbjct:  326 DKFEYFWQKESVFSQWYPSKFVVDGVEYSCAEQYMMQQKAILMDDMETADIIMALDAPNEMKQYGRYVKNFSQT-LWDQHCTRIVEKGNIAKFSQNDDLKMTLFSTYPKTLVEASPYDKVWGIGLRQNDRRAWNKSTWLGKNLLGEILTRVRDKL 479          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A371YUE5_9GAMM (NADAR family protein n=1 Tax=Acinetobacter sichuanensis TaxID=2136183 RepID=A0A371YUE5_9GAMM)

HSP 1 Score: 127 bits (319), Expect = 2.990e-34
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   10 KVVLFWQ---------PPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVR 462
            K + FW+           S FSQW  S+  +D  +Y   EQ+MM  KA+LF D    + IL T DP+E K LGR       S  +  R  NI ++ NLAKFSQN DL+  LL+TG+R L EASP D IWGI L A D +A  P+ W+G NLLG  L +VR
Sbjct:   21 KYLCFWEHIPKQKTVIDKSCFSQWFPSKFEVDGVQYKNTEQYMMAQKAKLFGDDEILNKILRTADPKEIKVLGRLVKGYQESVWLEHRF-NIVVQGNLAKFSQNEDLKQFLLNTGERVLVEASPVDKIWGIGLSAEDEKAEKPLQWKGLNLLGFALMEVR 179          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A7U7S1X5_LISMN (NADAR family protein n=2 Tax=Listeria TaxID=1637 RepID=A0A7U7S1X5_LISMN)

HSP 1 Score: 124 bits (310), Expect = 4.990e-33
Identity = 70/163 (42.94%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   10 KVVLFWQPPS---------VFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            K + FW   S          FSQW      +D  EY+C EQFMM  KA+LF+D+     IL    P++ K  GR  S   +  + +    NI  R NLAKFSQN DL+  LLHT +R L EASP D +WGI L + D  A +P+ W+G NLLG  L  VR+ L
Sbjct:    8 KYIFFWGNQSSSDGSINKSYFSQWWKCNFKVDGVEYNCAEQFMMAEKAKLFNDTEMRGEILAAKHPKQAKSFGRLISG-FQEDVWMENRFNIVKRGNLAKFSQNKDLKNFLLHTNNRILVEASPLDKVWGIGLASDDKHAENPLHWKGLNLLGFALMAVRDEL 169          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A8G0V2A4_9BURK (NADAR family protein n=1 Tax=Cupriavidus pinatubonensis TaxID=248026 RepID=A0A8G0V2A4_9BURK)

HSP 1 Score: 127 bits (319), Expect = 9.000e-33
Identity = 70/150 (46.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query:   22 FWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            F+Q  S FS W  +   +D  +++C+EQ++M +KA LF D  T  +IL+T DPR+ K LGRQ S  + S  +  R  +IA    LAKFSQN  LR  LL T    L EASPYD IWG+ L A+D R +    WRG NLLG+ L +VR  L
Sbjct:  116 FFQGTSPFSNWHKAAFVVDGKKFNCVEQYLMYAKATLFSDDDTVGSILSTPDPRQQKALGRQVSGFVESVWIENRV-SIARTGVLAKFSQNPHLREALLGTAGTELVEASPYDKIWGVGLPATDPRINDRSQWRGENLLGKILTEVREHL 264          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A6H5L3B4_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3B4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.380e-33
Identity = 72/157 (45.86%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    7 DKVVLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWR--GSNLLGQTLEQVRNTL 471
            D V+LFW+PPSVFSQW  S   +    YSC EQFMM+ KA+LF D +++  I+   DP+ HK LGR +  P        R + I L  + AKF+QN+D++  LL TG R L EASP+D  WGI + A    AS    W   G NLLG+ L +VR  L
Sbjct:   76 DDVLLFWKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDLTSYDKIMAATDPKTHKFLGR-NVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRFWGIGMSACFPDASVSSKWAASGKNLLGKALMEVRRLL 231          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A0M8YFS2_9PSEU (NADAR domain-containing protein n=2 Tax=Saccharothrix sp. NRRL B-16348 TaxID=1415542 RepID=A0A0M8YFS2_9PSEU)

HSP 1 Score: 122 bits (306), Expect = 1.600e-32
Identity = 71/161 (44.10%), Postives = 87/161 (54.04%), Query Frame = 1
Query:   16 VLFWQPPS---------VFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWRGSNLLGQTLEQVRNTL 471
            + FW+P +           SQW     T+D   Y   E FMM  KARLF D  T   +L    PRE K LGRQ        + VAR  ++ +R N+AKF  ++D R  LL TGDR L EASP D +WGI L A D RA+ P  WRG NLLG+ L +VR  L
Sbjct:    1 MFFWKPDARPGAPVGEECLSQWWEGPFTVDGLTYRTAEHFMMWGKARLFGDEHTARRVLAARTPREAKALGRQVRG-FDEDVWVARRLDVVVRGNVAKFDAHHDAREFLLATGDRVLVEASPLDRVWGIGLAADDERAADPAAWRGLNLLGEALVEVRARL 160          
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.820e-32
Identity = 72/157 (45.86%), Postives = 94/157 (59.87%), Query Frame = 1
Query:    7 DKVVLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSSTFSAILTTDDPREHKGLGRQSSTPLRS*LVVARTKNIALRSNLAKFSQNNDLRLTLLHTGDRRLTEASPYDNIWGISLRASDYRASSPIMWR--GSNLLGQTLEQVRNTL 471
            D V+LFW+PPSVFSQW  S   +    YSC EQFMM+ KA+LF D +++  I+   DP+ HK LGR +  P        R + I L  + AKF+QN+D++  LL TG R L EASP+D +WGI + A    AS    W   G NLLG+ L +VR  L
Sbjct:   76 DDVLLFWKPPSVFSQWTPSAFDVLGVRYSCGEQFMMSEKAKLFGDMTSYDKIMAATDPKTHKFLGR-NVRPFDYAEWERRREEIVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPDASDSSKWAASGKNLLGKALMEVRRLL 231          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1300.2273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ3_ECTSI2.080e-4148.37NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6J8EGL8_MYTCO1.120e-3546.10NADAR domain-containing protein n=2 Tax=Mytilus Ta... [more]
A0A5S9INE9_9BACT1.380e-3544.59NADAR domain-containing protein n=1 Tax=Candidatus... [more]
UPI00148A748D1.110e-3447.10uncharacterized protein LOC105329780 isoform X1 n=... [more]
A0A371YUE5_9GAMM2.990e-3445.63NADAR family protein n=1 Tax=Acinetobacter sichuan... [more]
A0A7U7S1X5_LISMN4.990e-3342.94NADAR family protein n=2 Tax=Listeria TaxID=1637 R... [more]
A0A8G0V2A4_9BURK9.000e-3346.67NADAR family protein n=1 Tax=Cupriavidus pinatubon... [more]
A0A6H5L3B4_9PHAE9.380e-3345.86NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A0M8YFS2_9PSEU1.600e-3244.10NADAR domain-containing protein n=2 Tax=Saccharoth... [more]
A0A6H5JDD1_9PHAE1.820e-3245.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1300contigF-serratus_M_contig1300:211968..212438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue5.9e-14
Seed eggNOG ortholog2880.D7FYJ3
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size471
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.7657728-CDS-F-serratus_M_contig1300:211967..2121981622929259.7657728-CDS-F-serratus_M_contig1300:211967..212198Fucus serratus maleCDSF-serratus_M_contig1300 211968..212198 +
1690962772.6276884-CDS-F-serratus_M_contig1300:211967..2121981690962772.6276884-CDS-F-serratus_M_contig1300:211967..212198Fucus serratus maleCDSF-serratus_M_contig1300 211968..212198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929259.776064-UTR-F-serratus_M_contig1300:212198..2124381622929259.776064-UTR-F-serratus_M_contig1300:212198..212438Fucus serratus maleUTRF-serratus_M_contig1300 212199..212438 +
1690962772.6385338-UTR-F-serratus_M_contig1300:212198..2124381690962772.6385338-UTR-F-serratus_M_contig1300:212198..212438Fucus serratus maleUTRF-serratus_M_contig1300 212199..212438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1300.2273.1prot_F-serratus_M_contig1300.2273.1Fucus serratus malepolypeptideF-serratus_M_contig1300 211968..212198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1300.2273.1

>prot_F-serratus_M_contig1300.2273.1 ID=prot_F-serratus_M_contig1300.2273.1|Name=mRNA_F-serratus_M_contig1300.2273.1|organism=Fucus serratus male|type=polypeptide|length=77bp
MDDKVVLFWQPPSVFSQWIHSQCTLDLAEYSCIEQFMMTSKARLFDDSST
FSAILTTDDPREHKGLGRQSSTPLRS*
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mRNA from alignment at F-serratus_M_contig1300:211968..212438+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1300.2273.1 ID=mRNA_F-serratus_M_contig1300.2273.1|Name=mRNA_F-serratus_M_contig1300.2273.1|organism=Fucus serratus male|type=mRNA|length=471bp|location=Sequence derived from alignment at F-serratus_M_contig1300:211968..212438+ (Fucus serratus male)
ATGGACGACAAGGTCGTCCTATTCTGGCAACCCCCCTCAGTTTTTTCCCA ATGGATACATTCCCAATGTACGTTGGACCTCGCTGAATACAGCTGTATTG AACAATTTATGATGACCTCGAAAGCCCGCCTGTTCGACGATAGCTCGACG TTCTCCGCGATACTCACCACTGACGATCCCCGTGAGCACAAAGGCCTCGG ACGTCAGTCAAGTACGCCACTTCGATCATGACTCGTGGTCGCGCGAACGA AAAATATCGCTTTACGAAGCAACCTAGCGAAATTCTCACAGAACAACGAT TTACGCTTGACCCTGCTACACACCGGCGACCGGCGACTCACCGAAGCAAG CCCTTATGATAACATATGGGGTATCAGCTTGAGAGCAAGCGACTACCGCG CTTCCTCTCCAATCATGTGGCGCGGCTCTAACTTACTTGGTCAGACACTG GAACAAGTGCGCAACACCCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1300:211968..212438+

>mRNA_F-serratus_M_contig1300.2273.1 ID=mRNA_F-serratus_M_contig1300.2273.1|Name=mRNA_F-serratus_M_contig1300.2273.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig1300:211968..212438+ (Fucus serratus male)
ATGGACGACAAGGTCGTCCTATTCTGGCAACCCCCCTCAGTTTTTTCCCA
ATGGATACATTCCCAATGTACGTTGGACCTCGCTGAATACAGCTGTATTG
AACAATTTATGATGACCTCGAAAGCCCGCCTGTTCGACGATAGCTCGACG
TTCTCCGCGATACTCACCACTGACGATCCCCGTGAGCACAAAGGCCTCGG
ACGTCAGTCAAGTACGCCACTTCGATCATGAATGGACGACAAGGTCGTCC
TATTCTGGCAACCCCCCTCAGTTTTTTCCCAATGGATACATTCCCAATGT
ACGTTGGACCTCGCTGAATACAGCTGTATTGAACAATTTATGATGACCTC
GAAAGCCCGCCTGTTCGACGATAGCTCGACGTTCTCCGCGATACTCACCA
CTGACGATCCCCGTGAGCACAAAGGCCTCGGACGTCAGTCAAGTACGCCA
CTTCGATCATGA
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