mRNA_F-serratus_M_contig13.2209.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig13.2209.1
Unique NamemRNA_F-serratus_M_contig13.2209.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig13.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig13contigF-serratus_M_contig13:781489..782065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig13.2209.1prot_F-serratus_M_contig13.2209.1Fucus serratus malepolypeptideF-serratus_M_contig13 781598..782060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.8393857-UTR-F-serratus_M_contig13:781488..7815971622929240.8393857-UTR-F-serratus_M_contig13:781488..781597Fucus serratus maleUTRF-serratus_M_contig13 781489..781597 -
1690962765.315-UTR-F-serratus_M_contig13:781488..7815971690962765.315-UTR-F-serratus_M_contig13:781488..781597Fucus serratus maleUTRF-serratus_M_contig13 781489..781597 -
1622929240.932557-UTR-F-serratus_M_contig13:782060..7820651622929240.932557-UTR-F-serratus_M_contig13:782060..782065Fucus serratus maleUTRF-serratus_M_contig13 782061..782065 -
1690962765.3491986-UTR-F-serratus_M_contig13:782060..7820651690962765.3491986-UTR-F-serratus_M_contig13:782060..782065Fucus serratus maleUTRF-serratus_M_contig13 782061..782065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.9007905-CDS-F-serratus_M_contig13:781597..7816621622929240.9007905-CDS-F-serratus_M_contig13:781597..781662Fucus serratus maleCDSF-serratus_M_contig13 781598..781662 -
1690962765.3290231-CDS-F-serratus_M_contig13:781597..7816621690962765.3290231-CDS-F-serratus_M_contig13:781597..781662Fucus serratus maleCDSF-serratus_M_contig13 781598..781662 -
1622929240.9158938-CDS-F-serratus_M_contig13:781675..7820601622929240.9158938-CDS-F-serratus_M_contig13:781675..782060Fucus serratus maleCDSF-serratus_M_contig13 781676..782060 -
1690962765.3388045-CDS-F-serratus_M_contig13:781675..7820601690962765.3388045-CDS-F-serratus_M_contig13:781675..782060Fucus serratus maleCDSF-serratus_M_contig13 781676..782060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig13.2209.1

>prot_F-serratus_M_contig13.2209.1 ID=prot_F-serratus_M_contig13.2209.1|Name=mRNA_F-serratus_M_contig13.2209.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MVAPIHSCISPYRLCHRNNSGDDLHISNFSFTSLILSLMLFHLEKHSTDR
CLIESSYHASGMNVVAAFLSILGVTLVNPCQSPSKSCHRNDPGDDESTSY
KMKCMRISSPIPVHSLKHFCHPAKRAVELFTVALVNPFFSPSLETLYSN*
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mRNA from alignment at F-serratus_M_contig13:781489..782065-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig13.2209.1 ID=mRNA_F-serratus_M_contig13.2209.1|Name=mRNA_F-serratus_M_contig13.2209.1|organism=Fucus serratus male|type=mRNA|length=577bp|location=Sequence derived from alignment at F-serratus_M_contig13:781489..782065- (Fucus serratus male)
TGTCCATGGTCGCACCCATACACTCATGTATCTCGCCGTATAGATTATGC
CATCGCAACAACTCTGGCGATGACCTCCACATTTCCAACTTTTCCTTTAC
ATCTCTTATTCTCTCCCTTATGTTATTTCATCTCGAAAAACACTCTACCG
ACCGGTGTCTAATCGAATCCAGCTACCACGCCTCTGGTATGAACGTTGTT
GCTGCGTTCCTAAGCATATTGGGAGTTACGCTCGTCAACCCATGTCAGTC
TCCATCAAAGTCATGCCATCGCAATGACCCTGGCGATGACGAGAGCACCT
CCTATAAAATGAAATGCATGAGAATATCATCACCCATCCCAGTTCATTCC
CTCAAGCATTTTTGTCATCCGGCAAAACGTGCAGTCGAATGCCCTTGCCG
AAGTGTTTACGGTCGCACTCGTCAACCCATTTTTCTCTCCATCTCTCGAA
ACACTATACTCCAACTAGCAGCTTTCTCGATTCTCTATCTAAATTCTAAC
TATTTTTCCTACTCTATTTTTATCTCTTTTTCATCATTTTTCTCTCGTTT
ATCTCTCTCTCTCTCACACACACACAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig13:781489..782065-

>mRNA_F-serratus_M_contig13.2209.1 ID=mRNA_F-serratus_M_contig13.2209.1|Name=mRNA_F-serratus_M_contig13.2209.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig13:781489..782065- (Fucus serratus male)
ATGGTCGCACCCATACACTCATGTATCTCGCCGTATAGATTATGCCATCG
CAACAACTCTGGCGATGACCTCCACATTTCCAACTTTTCCTTTACATCTC
TTATTCTCTCCCTTATGTTATTTCATCTCGAAAAACACTCTACCGACCGG
TGTCTAATCGAATCCAGCTACCACGCCTCTGGTATGAACGTTGTTGCTGC
GTTCCTAAGCATATTGGGAGTTACGCTCGTCAACCCATGTCAGTCTCCAT
CAAAGTCATGCCATCGCAATGACCCTGGCGATGACGAGAGCACCTCCTAT
AAAATGAAATGCATGAGAATATCATCACCCATCCCAGTTCATTCCCTCAA
GCATTTTTGTCATCCGGCAAAACGTGCAGTCGAATATGGTCGCACCCATA
CACTCATGTATCTCGCCGTATAGATTATGCCATCGCAACAACTCTGGCGA
TGACCTCCACATTTCCAACTTTTCCTTTACATCTCTTATTCTCTCCCTTA
TGTTATTTCATCTCGAAAAACACTCTACCGACCGGTGTCTAATCGAATCC
AGCTACCACGCCTCTGGTATGAACGTTGTTGCTGCGTTCCTAAGCATATT
GGGAGTTACGCTCGTCAACCCATGTCAGTCTCCATCAAAGTCATGCCATC
GCAATGACCCTGGCGATGACGAGAGCACCTCCTATAAAATGAAATGCATG
AGAATATCATCACCCATCCCAGTTCATTCCCTCAAGCATTTTTGTCATCC
GGCAAAACGTGCAGTCGAATTGTTTACGGTCGCACTCGTCAACCCATTTT
TCTCTCCATCTCTCGAAACACTATACTCCAACTAGTGTTTACGGTCGCAC
TCGTCAACCCATTTTTCTCTCCATCTCTCGAAACACTATACTCCAACTAG
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