mRNA_F-serratus_M_contig128.2080.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2080.1
Unique NamemRNA_F-serratus_M_contig128.2080.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:552886..553523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2080.1prot_F-serratus_M_contig128.2080.1Fucus serratus malepolypeptideF-serratus_M_contig128 552938..553523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.9075491-UTR-F-serratus_M_contig128:552885..5529371622929213.9075491-UTR-F-serratus_M_contig128:552885..552937Fucus serratus maleUTRF-serratus_M_contig128 552886..552937 +
1690962753.303421-UTR-F-serratus_M_contig128:552885..5529371690962753.303421-UTR-F-serratus_M_contig128:552885..552937Fucus serratus maleUTRF-serratus_M_contig128 552886..552937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.9357991-CDS-F-serratus_M_contig128:552937..5530801622929213.9357991-CDS-F-serratus_M_contig128:552937..553080Fucus serratus maleCDSF-serratus_M_contig128 552938..553080 +
1690962753.312439-CDS-F-serratus_M_contig128:552937..5530801690962753.312439-CDS-F-serratus_M_contig128:552937..553080Fucus serratus maleCDSF-serratus_M_contig128 552938..553080 +
1622929213.9478297-CDS-F-serratus_M_contig128:553414..5535231622929213.9478297-CDS-F-serratus_M_contig128:553414..553523Fucus serratus maleCDSF-serratus_M_contig128 553415..553523 +
1690962753.320371-CDS-F-serratus_M_contig128:553414..5535231690962753.320371-CDS-F-serratus_M_contig128:553414..553523Fucus serratus maleCDSF-serratus_M_contig128 553415..553523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2080.1

>prot_F-serratus_M_contig128.2080.1 ID=prot_F-serratus_M_contig128.2080.1|Name=mRNA_F-serratus_M_contig128.2080.1|organism=Fucus serratus male|type=polypeptide|length=84bp
MGVVIEFDNTDCGRDSLSPRNSSRFAARLRGSGAESPERHERAQEPSGRA
DSKASDPETTKPKRPSSVTTDSLQSRPKTPRTMH
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mRNA from alignment at F-serratus_M_contig128:552886..553523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2080.1 ID=mRNA_F-serratus_M_contig128.2080.1|Name=mRNA_F-serratus_M_contig128.2080.1|organism=Fucus serratus male|type=mRNA|length=638bp|location=Sequence derived from alignment at F-serratus_M_contig128:552886..553523+ (Fucus serratus male)
CGCACCTTAACCTCTCGATCAACGTTGAAGAGTAGAAGCAGATACTGCAC
GCATGGGGGTGGTGATCGAGTTTGACAACACGGATTGTGGCCGTGATTCT
TTGTCTCCACGAAACTCTTCGAGATTCGCGGCAAGACTCAGGGGCAGCGG
AGCCGAGTCCCCCGAAAGACACGAACGAGCTCAAGAGCCTTCGGGGTTAG
TTTTTTATACGCGATCAACTTGAGAAGCAATACTTTCATTCTTGAGGGCC
GTCAGTCAGCTTTAGCCTGGATATTACACTGCGGTTTTCCGTGAAAGCTG
TATCTCCATCTCCGTGTTCAAATATACTGACCTTTGTGTACCGCACATGC
GTGTCGCCATCACAAGTGCCCGACTTTCCTACATGGTACCGTTACTGTAT
ATTTCCTCGACTACATCCCCGGTCACCCCAGCAATGCGCCCAACCAAAAT
TGATACAAAGAACAATGCCTGGTATATCTGGTCATGCCTGATATCATATA
ATTTCCACCTCGCTCAAACGTTTCCGCAGTCGGGCAGATTCTAAGGCGTC
GGATCCGGAAACAACAAAGCCCAAAAGACCCAGCTCTGTTACAACAGACT
CCCTCCAATCACGTCCAAAAACTCCTAGGACAATGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:552886..553523+

>mRNA_F-serratus_M_contig128.2080.1 ID=mRNA_F-serratus_M_contig128.2080.1|Name=mRNA_F-serratus_M_contig128.2080.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig128:552886..553523+ (Fucus serratus male)
ATGGGGGTGGTGATCGAGTTTGACAACACGGATTGTGGCCGTGATTCTTT
GTCTCCACGAAACTCTTCGAGATTCGCGGCAAGACTCAGGGGCAGCGGAG
CCGAGTCCCCCGAAAGACACGAACGAGCTCAAGAGCCTTCGGGATGGGGG
TGGTGATCGAGTTTGACAACACGGATTGTGGCCGTGATTCTTTGTCTCCA
CGAAACTCTTCGAGATTCGCGGCAAGACTCAGGGGCAGCGGAGCCGAGTC
CCCCGAAAGACACGAACGAGCTCAAGAGCCTTCGGGTCGGGCAGATTCTA
AGGCGTCGGATCCGGAAACAACAAAGCCCAAAAGACCCAGCTCTGTTACA
ACAGACTCCCTCCAATCACGTCCAAAAACTCCTAGGACAATGCACTCGGG
CAGATTCTAAGGCGTCGGATCCGGAAACAACAAAGCCCAAAAGACCCAGC
TCTGTTACAACAGACTCCCTCCAATCACGTCCAAAAACTCCTAGGACAAT
GCAC
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