mRNA_F-serratus_M_contig1270.2018.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1270.2018.1
Unique NamemRNA_F-serratus_M_contig1270.2018.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: D7FS72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS72_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.810e-49
Identity = 81/108 (75.00%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:    1 MADELKSQPRRSDVNLKPYPHVSKDDRSDPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKPPGVGAQSSGDDDEE 324
            MADE K   R SD  L+PYPHV K DRSDPVAW NSREQFMRE LIAKER+KLLRQ+VIACYRKEGVNHYVNCKHLTTK LE+ QD+  G LKPPG GA    D DEE
Sbjct:    1 MADEAKLGARLSDATLQPYPHVPKSDRSDPVAWANSREQFMREHLIAKERVKLLRQEVIACYRKEGVNHYVNCKHLTTKYLEIIQDKTFGRLKPPGAGA----DGDEE 104
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A6U1N2S4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1N2S4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-20
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   40 VNLKPYPHVSKDDRSD------PVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            V LKPYPHV  D R+D      PV +  +REQ  RER+IA+E +K++R+QV  CY++EGVNHY NCKHLT +  +L      G+L+P
Sbjct:   14 VQLKPYPHVPSDLRADGRRHDDPVGYALAREQRGRERIIAEETVKIVREQVAQCYQREGVNHYQNCKHLTKQYYDLITAPGFGILQP 100
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A7S2IBJ5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBJ5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.260e-19
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   25 PRRSDVNLKPYPHVSKDDR----SDPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            P+ SDV L+PYPH  +       +DPV ++ + EQ  RER IA E +++LR+ VIACYRKEGVNHY NCK +T    ++    +VG ++P
Sbjct:    8 PKVSDVKLRPYPHEERGKEFGRANDPVKFLQAAEQRARERQIAYETVRILRKDVIACYRKEGVNHYDNCKEVTKAYYDVIIKNDVGQVQP 97
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: B7FYP7_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYP7_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 6.510e-18
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   10 ELKSQPRRSDVNLKPYPH--VSKDDRS-DPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            ++  +P++ + NL PYPH  +++  R+ DPVA++ + EQ  RER +A E +KLLRQ+VI CYRKEGVNHY NC+       ++   +++G L P
Sbjct:    3 DMYDEPKKYEGNLSPYPHNEITEPGRAKDPVAYLLATEQRARERQVAYETVKLLRQRVIHCYRKEGVNHYENCRQEAQDLFDIITKKDLGQLHP 96
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A7S2UB87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB87_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.740e-16
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   46 LKPYPHVSKDDR----SDPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            L PYPH  +        DPV ++ + EQ  RER +A E ++LLRQ VI C+RKEGVNHY NCK  T K  ++   ++VG L+P
Sbjct:   15 LPPYPHEERGSEFGRAKDPVKFLQAVEQRARERQVAYETVRLLRQDVITCFRKEGVNHYENCKEETEKYYKIIIKKDVGQLQP 97
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A7S4NIE6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NIE6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.240e-15
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   22 QPRRSDVNLKPYPHVS---KDDRS-DPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            +P+ S V L PYPH     KD  + DPV ++ + EQ  RER IA E ++LLRQ VI CYRKEGVNHY NCK +          ++VG + P
Sbjct:    7 EPKVSAVKLTPYPHEELGRKDGPAKDPVKFLQAAEQRARERQIAYETVRLLRQDVITCYRKEGVNHYENCKEVCETYYNTIIKKDVGQVHP 97
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A7S2KTT3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTT3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.330e-15
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   25 PRRSDVNLKPYPHV--SKDDRS---DPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            PR  +  + P+P    ++D+R    DPV ++   +Q  RE+ +A E +KL RQ VI CYRKEGVNHY NCK +  K + + Q  + G LKP
Sbjct:    8 PRVYEGKITPFPASDGARDERGRAMDPVGYLEEMQQRAREKAVAIEAVKLARQDVIQCYRKEGVNHYENCKEVVKKYVNMIQAPDYGALKP 98
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A7S2RVV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVV4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-14
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   37 DVNLKPYPHVSKDD--------RSDPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKPPGV 291
            D +L PYPH              S+PV ++ + EQ  RER +A E ++LLR+ VI CYRKEGVNHY NC+ +  K  ++   ++VG ++P  V
Sbjct:   12 DFSLPPYPHEEHTPGVGDGIGRASNPVKYLQAVEQRARERQVAVETVRLLRRDVIECYRKEGVNHYENCREVVDKYAKVVLKRSVGQVQPDWV 104
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A448YYA8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYA8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.670e-14
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:   43 NLKPYPHV---SKDD---RSDPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            +LKPY H    + DD     DPV ++ S EQ  RER +A E ++LLR+ VI CYR  GVNHY +CK +  K  +L   +++G L P
Sbjct:   26 SLKPYSHEELGTSDDIGRAKDPVKYLLSTEQRARERQVAYETVRLLREDVIECYRSSGVNHYTDCKEINQKYFDLVTKKDMGQLHP 111
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BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Match: A0A6T5S9L8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T5S9L8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.810e-14
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   37 DVNLKPYPHVSKDD-----RSDPVAWVNSREQFMRERLIAKERLKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKP 282
            + +L PYPH    +       +PV ++ S EQ  RER +A E ++LLR+ VI CYRKEGVNHY NCK    K  ++   ++VG + P
Sbjct:   12 EFSLPPYPHEDHSEDGLGRAKNPVKYLQSIEQRARERQVAYETVRLLRRDVIECYRKEGVNHYENCKAPVEKYAKVVLKRDVGQVNP 98
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1270.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS72_ECTSI2.810e-4975.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U1N2S4_9STRA1.100e-2050.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2IBJ5_9STRA8.260e-1946.67Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B7FYP7_PHATC6.510e-1843.62Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2UB87_9STRA8.740e-1646.99Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4NIE6_9STRA1.240e-1547.25Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2KTT3_9STRA8.330e-1542.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2RVV4_9STRA1.380e-1440.86Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A448YYA8_9STRA5.670e-1444.19Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6T5S9L8_9STRA5.810e-1442.53Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1270contigF-serratus_M_contig1270:139112..139438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue8.3e-38
Seed eggNOG ortholog2880.D7FS72
Preferred nameNDUFB10
KEGG koko:K03966
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG4009@1,KOG4009@2759
Ec32 ortholog descriptionNADH-ubiquinone oxidoreductase, subunit 10
Ec32 orthologEc-01_000800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929205.4195497-CDS-F-serratus_M_contig1270:139111..1394381622929205.4195497-CDS-F-serratus_M_contig1270:139111..139438Fucus serratus maleCDSF-serratus_M_contig1270 139112..139438 -
1690962749.6367764-CDS-F-serratus_M_contig1270:139111..1394381690962749.6367764-CDS-F-serratus_M_contig1270:139111..139438Fucus serratus maleCDSF-serratus_M_contig1270 139112..139438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1270.2018.1prot_F-serratus_M_contig1270.2018.1Fucus serratus malepolypeptideF-serratus_M_contig1270 139112..139438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1270.2018.1

>prot_F-serratus_M_contig1270.2018.1 ID=prot_F-serratus_M_contig1270.2018.1|Name=mRNA_F-serratus_M_contig1270.2018.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MADELKSQPRRSDVNLKPYPHVSKDDRSDPVAWVNSREQFMRERLIAKER
LKLLRQQVIACYRKEGVNHYVNCKHLTTKCLELTQDQNVGMLKPPGVGAQ
SSGDDDEE*
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mRNA from alignment at F-serratus_M_contig1270:139112..139438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1270.2018.1 ID=mRNA_F-serratus_M_contig1270.2018.1|Name=mRNA_F-serratus_M_contig1270.2018.1|organism=Fucus serratus male|type=mRNA|length=327bp|location=Sequence derived from alignment at F-serratus_M_contig1270:139112..139438- (Fucus serratus male)
ATGGCAGACGAGCTGAAGTCCCAGCCGAGGCGATCGGATGTGAACCTCAA
GCCCTACCCACACGTGAGTAAAGATGACCGGAGTGATCCAGTTGCATGGG
TGAACTCGAGGGAACAGTTCATGCGCGAGCGCTTGATTGCCAAGGAGCGA
CTAAAGCTTCTGCGTCAACAAGTGATCGCGTGCTACCGTAAGGAGGGGGT
GAACCACTACGTCAACTGCAAGCACCTCACCACGAAGTGCCTCGAGCTCA
CCCAAGACCAAAACGTCGGGATGCTGAAACCTCCCGGCGTGGGAGCCCAA
TCTTCGGGGGACGATGACGAGGAGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1270:139112..139438-

>mRNA_F-serratus_M_contig1270.2018.1 ID=mRNA_F-serratus_M_contig1270.2018.1|Name=mRNA_F-serratus_M_contig1270.2018.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig1270:139112..139438- (Fucus serratus male)
ATGGCAGACGAGCTGAAGTCCCAGCCGAGGCGATCGGATGTGAACCTCAA
GCCCTACCCACACGTGAGTAAAGATGACCGGAGTGATCCAGTTGCATGGG
TGAACTCGAGGGAACAGTTCATGCGCGAGCGCTTGATTGCCAAGGAGCGA
CTAAAGCTTCTGCGTCAACAAGTGATCGCGTGCTACCGTAAGGAGGGGGT
GAACCACTACGTCAACTGCAAGCACCTCACCACGAAGTGCCTCGAGCTCA
CCCAAGACCAAAACGTCGGGATGCTGAAACCTCCCGGCGTGGGAGCCCAA
TCTTCGGGGGACGATGACGAGGAGTAAATGGCAGACGAGCTGAAGTCCCA
GCCGAGGCGATCGGATGTGAACCTCAAGCCCTACCCACACGTGAGTAAAG
ATGACCGGAGTGATCCAGTTGCATGGGTGAACTCGAGGGAACAGTTCATG
CGCGAGCGCTTGATTGCCAAGGAGCGACTAAAGCTTCTGCGTCAACAAGT
GATCGCGTGCTACCGTAAGGAGGGGGTGAACCACTACGTCAACTGCAAGC
ACCTCACCACGAAGTGCCTCGAGCTCACCCAAGACCAAAACGTCGGGATG
CTGAAACCTCCCGGCGTGGGAGCCCAATCTTCGGGGGACGATGACGAGGA
GTAA
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