mRNA_F-serratus_M_contig1267.1991.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1267.1991.1
Unique NamemRNA_F-serratus_M_contig1267.1991.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1267.1991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1267contigF-serratus_M_contig1267:184971..185330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.6650293-CDS-F-serratus_M_contig1267:184970..1853121622929198.6650293-CDS-F-serratus_M_contig1267:184970..185312Fucus serratus maleCDSF-serratus_M_contig1267 184971..185312 +
1690962746.729718-CDS-F-serratus_M_contig1267:184970..1853121690962746.729718-CDS-F-serratus_M_contig1267:184970..185312Fucus serratus maleCDSF-serratus_M_contig1267 184971..185312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.6949553-UTR-F-serratus_M_contig1267:185312..1853301622929198.6949553-UTR-F-serratus_M_contig1267:185312..185330Fucus serratus maleUTRF-serratus_M_contig1267 185313..185330 +
1690962746.7393148-UTR-F-serratus_M_contig1267:185312..1853301690962746.7393148-UTR-F-serratus_M_contig1267:185312..185330Fucus serratus maleUTRF-serratus_M_contig1267 185313..185330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1267.1991.1prot_F-serratus_M_contig1267.1991.1Fucus serratus malepolypeptideF-serratus_M_contig1267 184971..185312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1267.1991.1

>prot_F-serratus_M_contig1267.1991.1 ID=prot_F-serratus_M_contig1267.1991.1|Name=mRNA_F-serratus_M_contig1267.1991.1|organism=Fucus serratus male|type=polypeptide|length=114bp
PAQPRLLWVILSRHVPDTAPCRSPALTFSAAINFALKRSATCFAVLRHFL
SSRAAVVHWSASIPKAEVVQETPHPLFFLLPHAARAYHQFSEYFALRQFR
VLHARHILHHTIQ*
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mRNA from alignment at F-serratus_M_contig1267:184971..185330+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1267.1991.1 ID=mRNA_F-serratus_M_contig1267.1991.1|Name=mRNA_F-serratus_M_contig1267.1991.1|organism=Fucus serratus male|type=mRNA|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig1267:184971..185330+ (Fucus serratus male)
CCAGCACAACCACGCTTGCTTTGGGTTATCCTCTCCCGTCACGTTCCGGA
TACTGCTCCATGCCGAAGTCCAGCCCTGACTTTTTCTGCAGCGATCAATT
TCGCCCTGAAACGTTCCGCTACTTGTTTCGCCGTCTTGCGCCATTTCCTC
TCGTCCCGGGCTGCAGTCGTTCACTGGTCGGCGTCGATACCGAAAGCTGA
GGTCGTTCAGGAGACACCACATCCACTCTTTTTCCTTCTTCCCCACGCTG
CCCGCGCCTACCACCAGTTCTCTGAATACTTCGCACTTCGACAGTTTCGT
GTTCTCCACGCACGCCACATATTGCATCACACCATACAATAAATATCGCG
TTACAGCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1267:184971..185330+

>mRNA_F-serratus_M_contig1267.1991.1 ID=mRNA_F-serratus_M_contig1267.1991.1|Name=mRNA_F-serratus_M_contig1267.1991.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1267:184971..185330+ (Fucus serratus male)
CCAGCACAACCACGCTTGCTTTGGGTTATCCTCTCCCGTCACGTTCCGGA
TACTGCTCCATGCCGAAGTCCAGCCCTGACTTTTTCTGCAGCGATCAATT
TCGCCCTGAAACGTTCCGCTACTTGTTTCGCCGTCTTGCGCCATTTCCTC
TCGTCCCGGGCTGCAGTCGTTCACTGGTCGGCGTCGATACCGAAAGCTGA
GGTCGTTCAGGAGACACCACATCCACTCTTTTTCCTTCTTCCCCACGCTG
CCCGCGCCTACCACCAGTTCTCTGAATACTTCGCACTTCGACAGTTTCGT
GTTCTCCACGCACGCCACATATTGCATCACACCATACAATAACCAGCACA
ACCACGCTTGCTTTGGGTTATCCTCTCCCGTCACGTTCCGGATACTGCTC
CATGCCGAAGTCCAGCCCTGACTTTTTCTGCAGCGATCAATTTCGCCCTG
AAACGTTCCGCTACTTGTTTCGCCGTCTTGCGCCATTTCCTCTCGTCCCG
GGCTGCAGTCGTTCACTGGTCGGCGTCGATACCGAAAGCTGAGGTCGTTC
AGGAGACACCACATCCACTCTTTTTCCTTCTTCCCCACGCTGCCCGCGCC
TACCACCAGTTCTCTGAATACTTCGCACTTCGACAGTTTCGTGTTCTCCA
CGCACGCCACATATTGCATCACACCATACAATAA
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