mRNA_F-serratus_M_contig1249.1886.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1249.1886.1
Unique NamemRNA_F-serratus_M_contig1249.1886.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1249.1886.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 4.250e-101
Identity = 184/383 (48.04%), Postives = 234/383 (61.10%), Query Frame = 1 
Query:    7 KRTGPMVAVYLDKGSVETLRKEFPGTAPGRLRKVVVQYNPSDEERQEYQPHFGGLATVKLTGEAFSTNRRALVASVALEDSPIKPKSLSCAVDVTPGDTGGGPLGSAALVEQIKNAGAEKEVSWKGVLPQLTAYDREFASEEGGYDRFDEPFTLTGSICRADWMEGTTARCRTHMEGGLPRTDGWTPQACILCNILEGSPCRDVYKRFDDISERIAKLSPPPKESSEENSLGGSSS----------------------------------EGDARVDVEKETVEDGTEKAAADAKESVKVAVSGEDGDGSGHDA-APAGRKEAXXXXXXX------KMRKQELETLETEREGIALEMLVCTDHHAVWVDSNADDGFTGDVMDD 1032
            +RTGPMVAVYLD  S+E L+ ++PGT PGRLRKVV++Y+PSDE+R  Y+P FG  ATVKLTGEA S NR ALVASV+   + ++P SLSCAVDVTPG+ GGGPLGS  L+EQIK  GA  E SWKG+LP L+A++R+F SEEG Y++ DEP TLTGSICRADW+EG T  CRT   GG  R DGWTPQ C +CN LE SPCRD+YK FD ++ RI +L PP + SS+ +   G+S                                             +   +G+   A    +  + A+SG  G   GH      G KE+  XXXXX      ++R++ELE LE +R  + ++ML C+  H V  DSNADDG   D+  D
Sbjct:   54 QRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSETSSDGSKSPGTSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAFEGSAGTAVGGGD--ENALSGRQG---GHSRKGEGGEKESEEXXXXXXXXXEERLRREELEVLEEKRTDVMVKMLKCSQFHHVLEDSNADDGLVPDMSGD 431
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BLAST of mRNA_F-serratus_M_contig1249.1886.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 7.200e-101
Identity = 179/386 (46.37%), Postives = 230/386 (59.59%), Query Frame = 1 
Query:    7 KRTGPMVAVYLDKGSVETLRKEFPGTAPGRLRKVVVQYNPSDEERQEYQPHFGGLATVKLTGEAFSTNRRALVASVALEDSPIKPKSLSCAVDVTPGDTGGGPLGSAALVEQIKNAGAEKEVSWKGVLPQLTAYDREFASEEGGYDRFDEPFTLTGSICRADWMEGTTARCRTHMEGGLPRTDGWTPQACILCNILEGSPCRDVYKRFDDISERIAKLSPPPKESSEENSLGGSSSEGDARV------------------DVEKETVEDGTEKAAADAKESV--------------KVAVSGEDGDGSGHDAAPAGRKEAXXXXXXX------KMRKQELETLETEREGIALEMLVCTDHHAVWVDSNADDGFTGDVMDDXXXXEK 1050
            +RTGPMVAVYLD  S+E L+ E+PGT PGRLRKVV++Y+PSDE+R  Y+P FGG ATVK+TGEA S NR ALVASV+   + ++P SLSCAVDVTPGD GGGPLGS  L+EQIK  GA  E SWKG+LP L+A++R+F SEEG Y++ DEP TLTGSICRADW+E  T  CRT   GG  R DGWTPQAC +CN LE SPCRD++K+FD +S RI +L P  + SS+ +   G                             E   V  G+++ A  +   +              + A+SG  G  S       G KE+             ++R++ELE LE +R  + +EM  C+  H V  DS ADDG    ++ D    E+
Sbjct:   58 QRTGPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSETSSDGSKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXKQTEATEVVAGSDRGAGRSGTDIASEGSAGPAVGGGDENALSGRHGGHSPSRKGEVGEKESVAGGSGEPETEEERLRREELEVLEDKRMVVMVEMFRCSKFHHVLEDSYADDGLVPGMLGDDEEGEE 443
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1249.1886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUT1_9PHAE4.250e-10148.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ55_ECTSI7.200e-10146.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1249contigF-serratus_M_contig1249:163281..165214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1077
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1249.1886.1prot_F-serratus_M_contig1249.1886.1Fucus serratus malepolypeptideF-serratus_M_contig1249 163281..165214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.3788435-CDS-F-serratus_M_contig1249:163280..1634631622929176.3788435-CDS-F-serratus_M_contig1249:163280..163463Fucus serratus maleCDSF-serratus_M_contig1249 163281..163463 +
1690962737.7253199-CDS-F-serratus_M_contig1249:163280..1634631690962737.7253199-CDS-F-serratus_M_contig1249:163280..163463Fucus serratus maleCDSF-serratus_M_contig1249 163281..163463 +
1622929176.3940492-CDS-F-serratus_M_contig1249:164002..1641881622929176.3940492-CDS-F-serratus_M_contig1249:164002..164188Fucus serratus maleCDSF-serratus_M_contig1249 164003..164188 +
1690962737.7347298-CDS-F-serratus_M_contig1249:164002..1641881690962737.7347298-CDS-F-serratus_M_contig1249:164002..164188Fucus serratus maleCDSF-serratus_M_contig1249 164003..164188 +
1622929176.4118845-CDS-F-serratus_M_contig1249:164309..1645661622929176.4118845-CDS-F-serratus_M_contig1249:164309..164566Fucus serratus maleCDSF-serratus_M_contig1249 164310..164566 +
1690962737.7433445-CDS-F-serratus_M_contig1249:164309..1645661690962737.7433445-CDS-F-serratus_M_contig1249:164309..164566Fucus serratus maleCDSF-serratus_M_contig1249 164310..164566 +
1622929176.4275036-CDS-F-serratus_M_contig1249:164763..1652141622929176.4275036-CDS-F-serratus_M_contig1249:164763..165214Fucus serratus maleCDSF-serratus_M_contig1249 164764..165214 +
1690962737.7518094-CDS-F-serratus_M_contig1249:164763..1652141690962737.7518094-CDS-F-serratus_M_contig1249:164763..165214Fucus serratus maleCDSF-serratus_M_contig1249 164764..165214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1249.1886.1

>prot_F-serratus_M_contig1249.1886.1 ID=prot_F-serratus_M_contig1249.1886.1|Name=mRNA_F-serratus_M_contig1249.1886.1|organism=Fucus serratus male|type=polypeptide|length=359bp
MPKRTGPMVAVYLDKGSVETLRKEFPGTAPGRLRKVVVQYNPSDEERQEY
QPHFGGLATVKLTGEAFSTNRRALVASVALEDSPIKPKSLSCAVDVTPGD
TGGGPLGSAALVEQIKNAGAEKEVSWKGVLPQLTAYDREFASEEGGYDRF
DEPFTLTGSICRADWMEGTTARCRTHMEGGLPRTDGWTPQACILCNILEG
SPCRDVYKRFDDISERIAKLSPPPKESSEENSLGGSSSEGDARVDVEKET
VEDGTEKAAADAKESVKVAVSGEDGDGSGHDAAPAGRKEARAESEEEKMR
KQELETLETEREGIALEMLVCTDHHAVWVDSNADDGFTGDVMDDDDDDEK
RVESSDKE*
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mRNA from alignment at F-serratus_M_contig1249:163281..165214+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1249.1886.1 ID=mRNA_F-serratus_M_contig1249.1886.1|Name=mRNA_F-serratus_M_contig1249.1886.1|organism=Fucus serratus male|type=mRNA|length=1934bp|location=Sequence derived from alignment at F-serratus_M_contig1249:163281..165214+ (Fucus serratus male)
ATGCCGAAACGAACGGGCCCGATGGTAGCTGTGTACTTGGACAAGGGGTC
CGTCGAAACGTTACGTAAAGAGTTCCCTGGTACCGCCCCAGGACGCCTGA
GGAAGGTGGTGGTGCAGTATAACCCTTCTGACGAAGAGCGTCAAGAGTAC
CAGCCACACTTCGGTGGCTTGGCCACAGTAAAGGTAGGTGGACAAAAGGG
TGGGCGCGAGCATGTATGTAGGTATGGTCATCACATATAGCAAGAGTATG
GATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCGGCTGAACAGAGA
AAATAAATATTTTCCTGTTCCCGTTTGCGCCTGAGAATTTGGCCCCATGA
GACGGGTTCGGCCGTCCCATCCCGCGTCAGCTTGCTCATTCTCCACACCC
AGGCTGAATCTGGTGCTTACTCACGGAATTCTCCCGATTTCCGGGCAAGC
GTGCGTTTATTTTAACCGCCATATGCCATCGGGCCAGTCCCGAGTTTATC
GGGTCACGCAATTGCGTACCGATAGCAGTGCATATCTCGGGGTGGGGCCA
CATAATAACAAGAAACAACGGTGCACGGTAGAGCGGTCAAAATCACTACA
CCCCGCGAAGGATTCCTGCTGCCGTCTTTACCATCCATACGACGTTGACG
GCGGTTTATTCCTCTCGCTCCGCCTTGCCGTCAACTACGTACGCCACGAA
CCCTACCCTCCTCCCAATTCAGCTGACTGGCGAGGCTTTCAGTACAAACC
GCCGCGCCCTGGTGGCGTCGGTAGCCCTCGAGGACAGTCCTATCAAGCCG
AAGTCCCTGTCTTGTGCAGTCGATGTCACGCCAGGGGACACGGGGGGCGG
TCCTCTCGGCAGCGCCGCCTTGGTCGAGCAGATCAAGAACGCGGGAGCGG
AGAAAGAGGTATGATACACAGTCATCGTGGCGCGGAAATGCCTTGGTACA
GCTTATATAACACCAGCTGCGGAGGCTTACACTTGGCGAGGTAAACACAC
GCACAACTCCCATTCGAATGACCTCTCAGGTGTCTTGGAAAGGCGTGCTC
CCTCAGCTCACGGCGTACGATCGGGAATTCGCTAGCGAAGAAGGAGGCTA
CGACAGATTCGACGAACCCTTCACATTGACAGGGTCCATCTGTCGGGCGG
ATTGGATGGAAGGAACCACAGCTCGCTGTCGGACGCATATGGAAGGAGGA
TTGCCGCGAACCGATGGTTGGACTCCTCAGGCTTGCATTTTGTGCAATAT
TCTCGAAGGCAGTCCTTGTCGAGATGTGTACAAGAGGTGGGCACCCGTCA
CGAGCCCCCCGATCGTGCCTATTGCCCATGCTGTTGGATAAGACGCGCAG
CGGTACAAGGATTTTGTTGATTCTTTTTAGAGCCAGATGGTTCGAATCCT
GGGGGCTATCAAAGCAATCTAACACGCCTCTATTGTTTGCATCGTTTATC
CCCTTCGTTGTTGTTACTCATCTCTTGTGCAAGATTCGACGATATCTCTG
AGAGAATAGCGAAGCTAAGTCCTCCCCCCAAGGAGTCTTCGGAAGAAAAC
AGTCTTGGAGGCAGTTCAAGTGAAGGAGATGCAAGAGTCGATGTGGAGAA
GGAGACAGTGGAAGACGGCACCGAGAAAGCTGCCGCTGATGCCAAGGAAA
GCGTCAAAGTAGCGGTTTCCGGGGAAGATGGAGATGGAAGCGGCCATGAC
GCTGCACCCGCGGGAAGGAAAGAGGCGCGAGCGGAATCGGAAGAGGAAAA
AATGCGAAAGCAAGAGTTGGAGACACTGGAGACGGAGCGGGAGGGGATTG
CGTTGGAAATGTTGGTATGCACGGATCATCACGCCGTTTGGGTTGATTCC
AACGCGGACGACGGTTTTACTGGCGATGTTATGGATGATGATGATGATGA
TGAAAAAAGGGTAGAATCGAGTGACAAAGAATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1249:163281..165214+

>mRNA_F-serratus_M_contig1249.1886.1 ID=mRNA_F-serratus_M_contig1249.1886.1|Name=mRNA_F-serratus_M_contig1249.1886.1|organism=Fucus serratus male|type=CDS|length=2154bp|location=Sequence derived from alignment at F-serratus_M_contig1249:163281..165214+ (Fucus serratus male)
ATGCCGAAACGAACGGGCCCGATGGTAGCTGTGTACTTGGACAAGGGGTC
CGTCGAAACGTTACGTAAAGAGTTCCCTGGTACCGCCCCAGGACGCCTGA
GGAAGGTGGTGGTGCAGTATAACCCTTCTGACGAAGAGCGTCAAGAGTAC
CAGCCACACTTCGGTGGCTTGGCCACAGTAAAGATGCCGAAACGAACGGG
CCCGATGGTAGCTGTGTACTTGGACAAGGGGTCCGTCGAAACGTTACGTA
AAGAGTTCCCTGGTACCGCCCCAGGACGCCTGAGGAAGGTGGTGGTGCAG
TATAACCCTTCTGACGAAGAGCGTCAAGAGTACCAGCCACACTTCGGTGG
CTTGGCCACAGTAAAGCTGACTGGCGAGGCTTTCAGTACAAACCGCCGCG
CCCTGGTGGCGTCGGTAGCCCTCGAGGACAGTCCTATCAAGCCGAAGTCC
CTGTCTTGTGCAGTCGATGTCACGCCAGGGGACACGGGGGGCGGTCCTCT
CGGCAGCGCCGCCTTGGTCGAGCAGATCAAGAACGCGGGAGCGGAGAAAG
AGCTGACTGGCGAGGCTTTCAGTACAAACCGCCGCGCCCTGGTGGCGTCG
GTAGCCCTCGAGGACAGTCCTATCAAGCCGAAGTCCCTGTCTTGTGCAGT
CGATGTCACGCCAGGGGACACGGGGGGCGGTCCTCTCGGCAGCGCCGCCT
TGGTCGAGCAGATCAAGAACGCGGGAGCGGAGAAAGAGGTGTCTTGGAAA
GGCGTGCTCCCTCAGCTCACGGCGTACGATCGGGAATTCGCTAGCGAAGA
AGGAGGCTACGACAGATTCGACGAACCCTTCACATTGACAGGGTCCATCT
GTCGGGCGGATTGGATGGAAGGAACCACAGCTCGCTGTCGGACGCATATG
GAAGGAGGATTGCCGCGAACCGATGGTTGGACTCCTCAGGCTTGCATTTT
GTGCAATATTCTCGAAGGCAGTCCTTGTCGAGATGTGTACAAGAGGTGTC
TTGGAAAGGCGTGCTCCCTCAGCTCACGGCGTACGATCGGGAATTCGCTA
GCGAAGAAGGAGGCTACGACAGATTCGACGAACCCTTCACATTGACAGGG
TCCATCTGTCGGGCGGATTGGATGGAAGGAACCACAGCTCGCTGTCGGAC
GCATATGGAAGGAGGATTGCCGCGAACCGATGGTTGGACTCCTCAGGCTT
GCATTTTGTGCAATATTCTCGAAGGCAGTCCTTGTCGAGATGTGTACAAG
AGATTCGACGATATCTCTGAGAGAATAGCGAAGCTAAGTCCTCCCCCCAA
GGAGTCTTCGGAAGAAAACAGTCTTGGAGGCAGTTCAAGTGAAGGAGATG
CAAGAGTCGATGTGGAGAAGGAGACAGTGGAAGACGGCACCGAGAAAGCT
GCCGCTGATGCCAAGGAAAGCGTCAAAGTAGCGGTTTCCGGGGAAGATGG
AGATGGAAGCGGCCATGACGCTGCACCCGCGGGAAGGAAAGAGGCGCGAG
CGGAATCGGAAGAGGAAAAAATGCGAAAGCAAGAGTTGGAGACACTGGAG
ACGGAGCGGGAGGGGATTGCGTTGGAAATGTTGGTATGCACGGATCATCA
CGCCGTTTGGGTTGATTCCAACGCGGACGACGGTTTTACTGGCGATGTTA
TGGATGATGATGATGATGATGAAAAAAGGGTAGAATCGAGTGACAAAGAA
TAGATTCGACGATATCTCTGAGAGAATAGCGAAGCTAAGTCCTCCCCCCA
AGGAGTCTTCGGAAGAAAACAGTCTTGGAGGCAGTTCAAGTGAAGGAGAT
GCAAGAGTCGATGTGGAGAAGGAGACAGTGGAAGACGGCACCGAGAAAGC
TGCCGCTGATGCCAAGGAAAGCGTCAAAGTAGCGGTTTCCGGGGAAGATG
GAGATGGAAGCGGCCATGACGCTGCACCCGCGGGAAGGAAAGAGGCGCGA
GCGGAATCGGAAGAGGAAAAAATGCGAAAGCAAGAGTTGGAGACACTGGA
GACGGAGCGGGAGGGGATTGCGTTGGAAATGTTGGTATGCACGGATCATC
ACGCCGTTTGGGTTGATTCCAACGCGGACGACGGTTTTACTGGCGATGTT
ATGGATGATGATGATGATGATGAAAAAAGGGTAGAATCGAGTGACAAAGA
ATAG
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