mRNA_F-serratus_M_contig1246.1865.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1246.1865.1
Unique NamemRNA_F-serratus_M_contig1246.1865.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.320e-41
Identity = 80/165 (48.48%), Postives = 110/165 (66.67%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRG-KEKEW 498
            Q   F YLGG V E  D++ EI  R+R  W  +RRY REL+D+ +    LKIR+++AEA+EALLY C TW+    HY  LR++HHR+LLR+IG +RK+  +R  SY + L   + +S+  T+R RRLL+AG L R   GRLPKR++FG L G  +R RG +E+ W
Sbjct:   74 QTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNW 238
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 5.960e-40
Identity = 76/165 (46.06%), Postives = 109/165 (66.06%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRG-KEKEW 498
            Q   F YLGG V E  D++ EI  R+R  W  +RRY REL+D+ +    LKIR+++AEA+EALLY C TW+    HY  LR++HHR+LLR++G +RK+  +R   + + L+  +  S+  T+R RR+L+AG L R   GRLPKR++FG L G  +R RG +E+ W
Sbjct:   74 QTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNW 238
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.350e-39
Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRGK-EKEW 498
            Q   F YLGG V E  D++ EI  R++A W  I+RY  EL+D+      LK R+++AEA+EALLY C TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+     S+  T+R RRLL+AG + R   GRLPKR++FG L G    G+G  E+ W
Sbjct:   53 QTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNW 217
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.210e-39
Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRGK-EKEW 498
            Q   F YLGG + E  D++ EI  R++A W  IRRY  EL+D+      LK R+++AEA+EALLY C TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+     S+  T+R RRLL+AG + R   GRLPKR++FG L G    G+G  E+ W
Sbjct:  104 QTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNW 268
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 9.060e-39
Identity = 77/163 (47.24%), Postives = 106/163 (65.03%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRGKEKE 495
            Q   F YLGG V E  D++ EI  R+R  W  +RRY  EL+D+      LKIR+++AEA+EALLY C TW+    HY  LR++HHR+LLR+IG +RK+  +R  SY + L+  Q  S+  T+R RRLL AG L     GRLPKR++FG L G  +R RG++++
Sbjct:  110 QTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVQCQSVEATIRQRRLLIAGALATQPDGRLPKRLMFGELAGGEKRRRGEQEQ 272
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 9.580e-39
Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRGK-EKEW 498
            Q   F YLGG V E  D++ EI  R++A W  I+RY  EL+D+      LK R+++AEA+EALLY C TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+     S+  T+R RRLL+AG + R   GRLPKR++FG L G    G+G  E+ W
Sbjct:   72 QTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNW 236
[Close]
BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.400e-38
Identity = 78/165 (47.27%), Postives = 110/165 (66.67%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGR-GKEKEW 498
            Q   F YLGG V E  D++ EI+ R+R  W  +RRY REL+D+ +    LKIR+++AEA+EALLY C TW+    HY  LR++HHR+LLR+IG +RK+  +R  SY + L+  +  S+  T+R RRLL AG L R + GRLPKR++ G L G  +R + G+E+ W
Sbjct:   74 QTTEFRYLGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLGELAGGEQRRKWGQEQNW 238
[Close]
BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.630e-38
Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRGK-EKEW 498
            Q   F YLGG V E  D++ EI  R++A W  IRRY  EL+D+      LK R+++AEA+EALLY C TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+     S+  T+R RRLL+AG + R   GRLPKR++FG L G    GRG  E+ W
Sbjct:  355 QTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNW 519
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BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.470e-38
Identity = 80/165 (48.48%), Postives = 110/165 (66.67%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRG-KEKEW 498
            Q   F YLGG V E  D++ EI  R+R  W  +RRY REL+D+ +    LKIR+++AEA+EALLY C TW+    HY  LR++HHR+LLR+IG +RK+  +R  SY + L+  +  S+  T+R RRLL+AG L R   GRLPKR++FG L G  +R RG +E+ W
Sbjct:  426 QTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNW 590
[Close]
BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Match: A0A6H5KBN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 8.930e-38
Identity = 76/160 (47.50%), Postives = 100/160 (62.50%), Query Frame = 1 
Query:    7 QVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVALSLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFGNLEGAARRGRGK 486
            Q   F YLGG V E  D++ EI  R+R  W  +RRY REL+D+ K    LKI + +AEA+EALLY C TW+    HY  LR++HHR+LLR+IG  RK   +R  SY + L+     S+  T+R RRLL+AG   R   GRLPKR++ G L G  +R RG+
Sbjct:  109 QTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYDRELFDRPKAPFRLKIHLRQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYMRKEDTYRQLSYPQTLKRVGCQSVEATIRQRRLLFAGAFARQPDGRLPKRLMLGELAGGQKRRRGR 268
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1246.1865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH7_9PHAE2.320e-4148.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ16_9PHAE5.960e-4046.06Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JLH5_9PHAE1.350e-3947.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE2.210e-3947.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LCI9_9PHAE9.060e-3947.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE9.580e-3947.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6U6_9PHAE1.400e-3847.27Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE2.630e-3849.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE4.470e-3848.48Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBN1_9PHAE8.930e-3847.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1246contigF-serratus_M_contig1246:153699..154196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.5
Seed ortholog evalue8.5e-10
Seed eggNOG ortholog6500.XP_005092035.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BI15@33208,3D94V@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.4760175-CDS-F-serratus_M_contig1246:153698..1541961622929171.4760175-CDS-F-serratus_M_contig1246:153698..154196Fucus serratus maleCDSF-serratus_M_contig1246 153699..154196 +
1690962735.0572267-CDS-F-serratus_M_contig1246:153698..1541961690962735.0572267-CDS-F-serratus_M_contig1246:153698..154196Fucus serratus maleCDSF-serratus_M_contig1246 153699..154196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1246.1865.1prot_F-serratus_M_contig1246.1865.1Fucus serratus malepolypeptideF-serratus_M_contig1246 153699..154196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1246.1865.1

>prot_F-serratus_M_contig1246.1865.1 ID=prot_F-serratus_M_contig1246.1865.1|Name=mRNA_F-serratus_M_contig1246.1865.1|organism=Fucus serratus male|type=polypeptide|length=166bp
IQQVRSFTYLGGAVTEVRDMSVEITRRTRACWMRIRRYQRELYDQLKVAL
SLKIRMVKAEAIEALLYVCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKR
PDHRMTSYNRALEITQRDSIGTTLRTRRLLWAGTLLRVNSGRLPKRVVFG
NLEGAARRGRGKEKEW
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mRNA from alignment at F-serratus_M_contig1246:153699..154196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1246.1865.1 ID=mRNA_F-serratus_M_contig1246.1865.1|Name=mRNA_F-serratus_M_contig1246.1865.1|organism=Fucus serratus male|type=mRNA|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig1246:153699..154196+ (Fucus serratus male)
ATACAACAGGTACGATCCTTCACCTACCTAGGGGGCGCCGTGACCGAAGT
CCGAGACATGTCCGTTGAAATCACCAGACGGACCCGCGCATGCTGGATGC
GCATCAGGCGGTACCAACGGGAGCTCTACGACCAACTGAAAGTCGCACTC
TCCCTCAAGATCCGAATGGTTAAGGCGGAGGCAATCGAGGCCCTTTTGTA
TGTATGCAGTACGTGGACCCTTCGCCAGGAACACTACGCCAAACTCCGCA
CCGTACACCACCGAGTCTTGCTTCGTATCATCGGGGCACAGCGCAAGAGA
CCAGACCACCGGATGACTTCGTACAATCGTGCCCTTGAGATAACCCAGCG
TGATAGCATTGGGACGACATTGCGAACGAGAAGACTCTTGTGGGCGGGGA
CACTTCTCAGAGTGAACAGCGGGCGGTTGCCGAAGCGGGTCGTTTTTGGA
AACCTTGAGGGTGCAGCACGGAGAGGACGGGGGAAGGAGAAAGAGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1246:153699..154196+

>mRNA_F-serratus_M_contig1246.1865.1 ID=mRNA_F-serratus_M_contig1246.1865.1|Name=mRNA_F-serratus_M_contig1246.1865.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig1246:153699..154196+ (Fucus serratus male)
ATACAACAGGTACGATCCTTCACCTACCTAGGGGGCGCCGTGACCGAAGT
CCGAGACATGTCCGTTGAAATCACCAGACGGACCCGCGCATGCTGGATGC
GCATCAGGCGGTACCAACGGGAGCTCTACGACCAACTGAAAGTCGCACTC
TCCCTCAAGATCCGAATGGTTAAGGCGGAGGCAATCGAGGCCCTTTTGTA
TGTATGCAGTACGTGGACCCTTCGCCAGGAACACTACGCCAAACTCCGCA
CCGTACACCACCGAGTCTTGCTTCGTATCATCGGGGCACAGCGCAAGAGA
CCAGACCACCGGATGACTTCGTACAATCGTGCCCTTGAGATAACCCAGCG
TGATAGCATTGGGACGACATTGCGAACGAGAAGACTCTTGTGGGCGGGGA
CACTTCTCAGAGTGAACAGCGGGCGGTTGCCGAAGCGGGTCGTTTTTGGA
AACCTTGAGGGTGCAGCACGGAGAGGACGGGGGAAGGAGAAAGAGTGGAT
ACAACAGGTACGATCCTTCACCTACCTAGGGGGCGCCGTGACCGAAGTCC
GAGACATGTCCGTTGAAATCACCAGACGGACCCGCGCATGCTGGATGCGC
ATCAGGCGGTACCAACGGGAGCTCTACGACCAACTGAAAGTCGCACTCTC
CCTCAAGATCCGAATGGTTAAGGCGGAGGCAATCGAGGCCCTTTTGTATG
TATGCAGTACGTGGACCCTTCGCCAGGAACACTACGCCAAACTCCGCACC
GTACACCACCGAGTCTTGCTTCGTATCATCGGGGCACAGCGCAAGAGACC
AGACCACCGGATGACTTCGTACAATCGTGCCCTTGAGATAACCCAGCGTG
ATAGCATTGGGACGACATTGCGAACGAGAAGACTCTTGTGGGCGGGGACA
CTTCTCAGAGTGAACAGCGGGCGGTTGCCGAAGCGGGTCGTTTTTGGAAA
CCTTGAGGGTGCAGCACGGAGAGGACGGGGGAAGGAGAAAGAGTGG
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