mRNA_F-serratus_M_contig1237.1792.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1237.1792.1
Unique NamemRNA_F-serratus_M_contig1237.1792.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: D7FGR6_ECTSI (NDK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGR6_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 6.080e-103
Identity = 147/176 (83.52%), Postives = 163/176 (92.61%), Query Frame = 2 
Query:  215 QMQESSPAMCARSSPFPYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            + Q+   A+CA  + F YTG PGT +ERSFIAIKPDG+QRQLVGEVI+RFEKKGYKLVAMKMIWPTKEMA+NHYADLS+KPFF+GLV+YFSSGPIVAMVWEGP+VILTGRKMLGATNPNSS+PGS+RGDYCIRVGRNLIHGSDG +SAQHEIGMWFTEEECSAW RTLDAWI +DN
Sbjct:   63 RQQQQETALCAAPA-FKYTGEPGTAHERSFIAIKPDGVQRQLVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFSGLVDYFSSGPIVAMVWEGPEVILTGRKMLGATNPNSSEPGSLRGDYCIRVGRNLIHGSDGGESAQHEIGMWFTEEECSAWPRTLDAWIVADN 237
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A835YSZ5_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ5_9STRA)

HSP 1 Score: 272 bits (696), Expect = 2.890e-86
Identity = 120/161 (74.53%), Postives = 142/161 (88.20%), Query Frame = 2 
Query:  260 FPYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            FPYTG  GTGNERSFIAIKPDG+QR L+ EVI+RFEKKGYKLVAMKMIW T+EMA+NHY DL  +PFF  LV YF+SGPIVAMVWEGPDVI TGRK+LGATNP ++D G++RGD+C+  GRN+IHGSDGP+SA HEIGMWFTE+ECSA+ R++D+WI +DN
Sbjct:   63 FPYTGVAGTGNERSFIAIKPDGVQRGLIAEVISRFEKKGYKLVAMKMIWATEEMAANHYDDLKGRPFFPALVKYFASGPIVAMVWEGPDVIKTGRKILGATNPQAADVGTLRGDFCLTTGRNIIHGSDGPESAAHEIGMWFTEKECSAYSRSIDSWIVADN 223
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A7S2XZK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.110e-82
Identity = 117/160 (73.12%), Postives = 133/160 (83.12%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            PYTG PGT +ER+FIA+KPDG+QR LVGE+I RFEKKGYKLVAMK+IW T+E    HY+DL+ +PFF GLV YFSSGPIV MVWEGPD + TGRKMLGATNP +SDPG+IRGD+C+ VGRNLIHGSD  DSA+ EI  WFT EEC  W RTLDAWIT DN
Sbjct:   62 PYTGLPGTAHERTFIAVKPDGVQRGLVGEIIARFEKKGYKLVAMKLIWATEEKTKAHYSDLAARPFFGGLVKYFSSGPIVGMVWEGPDAVKTGRKMLGATNPLASDPGTIRGDFCVVVGRNLIHGSDATDSAEKEIANWFTPEECYDWPRTLDAWITEDN 221
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A485KUH1_9STRA (Nucleoside diphosphate kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUH1_9STRA)

HSP 1 Score: 254 bits (648), Expect = 4.430e-79
Identity = 114/160 (71.25%), Postives = 135/160 (84.38%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            PYTG PGT NER+FIAIKPDG++R L+ EVI RFEKKGYKLVA+K++ PT+  A  HYADLS +PFF GLV YFSSGPIVAMVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDGPDSA+HEIGMWFT+ E + + R++D WI +DN
Sbjct:   62 PYTGIPGTKNERTFIAIKPDGVERGLISEVIARFEKKGYKLVALKLLTPTEARAREHYADLSGRPFFNGLVKYFSSGPIVAMVWEGTDVILTGRKILGATNPNQAPPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEINDYHRSIDDWIVADN 221
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A6G0XYC2_9STRA (Nucleoside diphosphate kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYC2_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.250e-78
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            PYTG PGT NER+FIAIKPDG++R L+ EVI RFEKKGYKL+A+K++ PT+  A  HYADL+ +PFF GLV YFSSGPIVAMVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDGP+SA+HEIGMWFT EE   ++R++D WI +DN
Sbjct:   62 PYTGIPGTKNERTFIAIKPDGVERGLISEVIARFEKKGYKLIALKLLTPTEARAREHYADLAGRPFFNGLVKYFSSGPIVAMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPESAKHEIGMWFTAEEIQDYERSIDEWIVADN 221
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A1W0ABA6_9STRA (Nucleoside diphosphate kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABA6_9STRA)

HSP 1 Score: 251 bits (641), Expect = 4.820e-78
Identity = 113/160 (70.62%), Postives = 134/160 (83.75%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            PYTG PGT +ER+FIAIKPDG++R L+ EVI RFEKKGYKLVAMKM+  T+  A +HYADLS KPFF GLV YF+SGPIV MVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDGPDSA+HEIGMWFT+ E + + R++D W+ SDN
Sbjct:   61 PYTGVPGTKHERTFIAIKPDGVERGLISEVIARFEKKGYKLVAMKMMTATEARARDHYADLSSKPFFGGLVKYFASGPIVCMVWEGNDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEINDYARSIDEWVVSDN 220
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A024UVV3_9STRA (Nucleoside diphosphate kinase (Fragment) n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UVV3_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.080e-77
Identity = 114/160 (71.25%), Postives = 132/160 (82.50%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            PYTG PGT NER+FIAIKPDG++R L+ EVI RFEKKGYKLVAMK++ PT+  A  HYADLS +PFF GLV YFSSGPIVAMVWEG DVILTGRK+LGATNPN + PG++RGD  I  GRNLIHGSDGP+SA+HEIGMWFT  E   ++R +D WI +DN
Sbjct:   80 PYTGIPGTKNERTFIAIKPDGVERALISEVIGRFEKKGYKLVAMKLLTPTEARAREHYADLSSRPFFNGLVKYFSSGPIVAMVWEGQDVILTGRKILGATNPNQAAPGTLRGDNTISTGRNLIHGSDGPESAKHEIGMWFTAAEIQDYERAIDEWIVADN 239
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: M4B5V5_HYAAE (Nucleoside diphosphate kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B5V5_HYAAE)

HSP 1 Score: 248 bits (634), Expect = 6.820e-77
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            P+ G PGT  ER+FIAIKPDG+QR L+ EVI RFEKKGYKLVA+K++  T+E A  HYADLS +PFF GLV+YF+SGPIV MVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDGPDSA+HEI MWFT  E S +DR LD WI +DN
Sbjct:   68 PHAGVPGTSKERTFIAIKPDGVQRGLISEVIARFEKKGYKLVALKLMTATEERAKAHYADLSERPFFPGLVDYFTSGPIVCMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEISMWFTAAEMSNYDRALDTWIVADN 227
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A8K1FQB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQB9_PYTOL)

HSP 1 Score: 246 bits (629), Expect = 3.470e-76
Identity = 113/172 (65.70%), Postives = 138/172 (80.23%), Query Frame = 2 
Query:  227 SSPAMCARSSPFPYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            SS    A++   P+ G PGT +ER+FIAIKPDG+QR L+ EVI RFEKKGYKLVA+K++  +++ A  HYADLS +PFF GLV YF+SGPIV MVWEG DVILTGRK+LGATNPN + PG++RGD CI  GRNL+HGSDGPDSA+HEI MWFT EE + ++R LD+WI SDN
Sbjct:   53 SSETNAAQAQKVPHAGVPGTKHERTFIAIKPDGVQRGLISEVIARFEKKGYKLVALKLMTASEQRAKAHYADLSARPFFPGLVKYFTSGPIVCMVWEGTDVILTGRKILGATNPNDAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEISMWFTAEEINNYERALDSWIVSDN 224
[Close]
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Match: A0A662Y1S8_9STRA (Nucleoside diphosphate kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1S8_9STRA)

HSP 1 Score: 246 bits (629), Expect = 3.710e-76
Identity = 111/160 (69.38%), Postives = 131/160 (81.88%), Query Frame = 2 
Query:  263 PYTGAPGTGNERSFIAIKPDGIQRQLVGEVITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPIVAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGPDSAQHEIGMWFTEEECSAWDRTLDAWITSDN 742
            P+TG PGT  ER+FIAIKPDG+QR L+ EVI RFEKKGYKLVA+K++  ++E A  HYADLS +PFF GLV YF+SGPIV MVWEG DVILTGR++LGATNPN + PG++RGD CI  GRNL+HGSDGPDSA+HEIGMWFT  E S + R LD WI +DN
Sbjct:   67 PHTGVPGTAKERTFIAIKPDGVQRGLISEVIARFEKKGYKLVALKLMTASEERARAHYADLSERPFFPGLVKYFTSGPIVCMVWEGTDVILTGRQILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTPAEVSDYQRALDTWIVADN 226
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1237.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGR6_ECTSI6.080e-10383.52NDK domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YSZ5_9STRA2.890e-8674.53Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
A0A7S2XZK8_9STRA3.110e-8273.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485KUH1_9STRA4.430e-7971.25Nucleoside diphosphate kinase n=1 Tax=Aphanomyces ... [more]
A0A6G0XYC2_9STRA1.250e-7870.00Nucleoside diphosphate kinase n=1 Tax=Aphanomyces ... [more]
A0A1W0ABA6_9STRA4.820e-7870.63Nucleoside diphosphate kinase n=1 Tax=Thraustothec... [more]
A0A024UVV3_9STRA5.080e-7771.25Nucleoside diphosphate kinase (Fragment) n=5 Tax=A... [more]
M4B5V5_HYAAE6.820e-7770.00Nucleoside diphosphate kinase n=1 Tax=Hyaloperonos... [more]
A0A8K1FQB9_PYTOL3.470e-7665.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662Y1S8_9STRA3.710e-7669.38Nucleoside diphosphate kinase n=2 Tax=Nothophytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1237contigF-serratus_M_contig1237:72613..80333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue5.6e-84
Seed eggNOG ortholog2880.D7FGR6
Preferred nameNDPK2
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categorymitochondrion
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007602,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009636,GO:0009639,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009941,GO:0009987,GO:0010017,GO:0010033,GO:0010035,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0023052,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032870,GO:0033554,GO:0034404,GO:0034599,GO:0034614,GO:0034641,GO:0034654,GO:0035690,GO:0042221,GO:0042455,GO:0042493,GO:0042542,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046677,GO:0046939,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0055086,GO:0061508,GO:0065007,GO:0070013,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071365,GO:0071478,GO:0071482,GO:0071489,GO:0071495,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097237,GO:0104004,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901700,GO:1901701
EggNOG free text desc.Nucleoside diphosphate kinase
EggNOG OGsCOG0105@1,KOG0888@2759
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-04_001140.1
EC2.7.4.6
COG Functional cat.F
BiGG ReactioniRC1080.CRv4_Au5_s16_g6072_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons7
Model size1381
Cds size696
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.5833747-UTR-F-serratus_M_contig1237:72612..726611622929157.5833747-UTR-F-serratus_M_contig1237:72612..72661Fucus serratus maleUTRF-serratus_M_contig1237 72613..72661 +
1690962727.6878119-UTR-F-serratus_M_contig1237:72612..726611690962727.6878119-UTR-F-serratus_M_contig1237:72612..72661Fucus serratus maleUTRF-serratus_M_contig1237 72613..72661 +
1622929157.714801-UTR-F-serratus_M_contig1237:79697..803331622929157.714801-UTR-F-serratus_M_contig1237:79697..80333Fucus serratus maleUTRF-serratus_M_contig1237 79698..80333 +
1690962727.7778313-UTR-F-serratus_M_contig1237:79697..803331690962727.7778313-UTR-F-serratus_M_contig1237:79697..80333Fucus serratus maleUTRF-serratus_M_contig1237 79698..80333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.5994332-CDS-F-serratus_M_contig1237:72661..729191622929157.5994332-CDS-F-serratus_M_contig1237:72661..72919Fucus serratus maleCDSF-serratus_M_contig1237 72662..72919 +
1690962727.7026093-CDS-F-serratus_M_contig1237:72661..729191690962727.7026093-CDS-F-serratus_M_contig1237:72661..72919Fucus serratus maleCDSF-serratus_M_contig1237 72662..72919 +
1622929157.619905-CDS-F-serratus_M_contig1237:73306..733961622929157.619905-CDS-F-serratus_M_contig1237:73306..73396Fucus serratus maleCDSF-serratus_M_contig1237 73307..73396 +
1690962727.7232609-CDS-F-serratus_M_contig1237:73306..733961690962727.7232609-CDS-F-serratus_M_contig1237:73306..73396Fucus serratus maleCDSF-serratus_M_contig1237 73307..73396 +
1622929157.633085-CDS-F-serratus_M_contig1237:77182..772251622929157.633085-CDS-F-serratus_M_contig1237:77182..77225Fucus serratus maleCDSF-serratus_M_contig1237 77183..77225 +
1690962727.7368696-CDS-F-serratus_M_contig1237:77182..772251690962727.7368696-CDS-F-serratus_M_contig1237:77182..77225Fucus serratus maleCDSF-serratus_M_contig1237 77183..77225 +
1622929157.6477194-CDS-F-serratus_M_contig1237:77447..775911622929157.6477194-CDS-F-serratus_M_contig1237:77447..77591Fucus serratus maleCDSF-serratus_M_contig1237 77448..77591 +
1690962727.7461762-CDS-F-serratus_M_contig1237:77447..775911690962727.7461762-CDS-F-serratus_M_contig1237:77447..77591Fucus serratus maleCDSF-serratus_M_contig1237 77448..77591 +
1622929157.6629791-CDS-F-serratus_M_contig1237:78005..780611622929157.6629791-CDS-F-serratus_M_contig1237:78005..78061Fucus serratus maleCDSF-serratus_M_contig1237 78006..78061 +
1690962727.7541008-CDS-F-serratus_M_contig1237:78005..780611690962727.7541008-CDS-F-serratus_M_contig1237:78005..78061Fucus serratus maleCDSF-serratus_M_contig1237 78006..78061 +
1622929157.681762-CDS-F-serratus_M_contig1237:78617..786651622929157.681762-CDS-F-serratus_M_contig1237:78617..78665Fucus serratus maleCDSF-serratus_M_contig1237 78618..78665 +
1690962727.7616646-CDS-F-serratus_M_contig1237:78617..786651690962727.7616646-CDS-F-serratus_M_contig1237:78617..78665Fucus serratus maleCDSF-serratus_M_contig1237 78618..78665 +
1622929157.6963682-CDS-F-serratus_M_contig1237:79640..796971622929157.6963682-CDS-F-serratus_M_contig1237:79640..79697Fucus serratus maleCDSF-serratus_M_contig1237 79641..79697 +
1690962727.7693655-CDS-F-serratus_M_contig1237:79640..796971690962727.7693655-CDS-F-serratus_M_contig1237:79640..79697Fucus serratus maleCDSF-serratus_M_contig1237 79641..79697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1237.1792.1prot_F-serratus_M_contig1237.1792.1Fucus serratus malepolypeptideF-serratus_M_contig1237 72662..79697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1237.1792.1

>prot_F-serratus_M_contig1237.1792.1 ID=prot_F-serratus_M_contig1237.1792.1|Name=mRNA_F-serratus_M_contig1237.1792.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MFSRVASMAVRGTSRMAAARRLSSQASATLTQASSSTLRYATASVACLGG
LTFAAQMQESSPAMCARSSPFPYTGAPGTGNERSFIAIKPDGIQRQLVGE
VITRFEKKGYKLVAMKMIWPTKEMASNHYADLSRKPFFAGLVNYFSSGPI
VAMVWEGPDVILTGRKMLGATNPNSSDPGSIRGDYCIRVGRNLIHGSDGP
DSAQHEIGMWFTEEECSAWDRTLDAWITSDN*
back to top

mRNA from alignment at F-serratus_M_contig1237:72613..80333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1237.1792.1 ID=mRNA_F-serratus_M_contig1237.1792.1|Name=mRNA_F-serratus_M_contig1237.1792.1|organism=Fucus serratus male|type=mRNA|length=7721bp|location=Sequence derived from alignment at F-serratus_M_contig1237:72613..80333+ (Fucus serratus male)
ACCTTCTTCACAACACTCCGAGCCTTTCTCGCTAACCCGAAGGAAAATCA
TGTTCTCGCGCGTAGCAAGCATGGCGGTCCGTGGCACCAGCAGGATGGCT
GCTGCTCGCCGTCTCTCGTCGCAAGCCTCCGCAACATTGACCCAGGCGTC
ATCCTCCACCCTACGCTACGCGACAGCAAGCGTGGCGTGCTTGGGCGGCT
TGACATTCGCCGCTCAGATGCAAGAGTCTTCTCCTGCCATGTGCGCCAGA
TCCAGCCCCTTCCCGTACACTGGTGCACCGGGCACTGGCAATGAGCGGTC
ATTCATCGTGAGTTTCGTGGGAATCATCCGTCAGAGTCATCATCATGTGC
CACACCAAATTTGCTAAAGTGGTGACCGCACACAACTCAGAATCATTGTG
TGATCCCCTCTGCCAAGGACCGATGGATCTAATAATTGCTCCTCGTAGAA
ATTCGTTGATTCGACTCTGACCGAAAAATGTTTTGATGACTTGTCCTTCA
CCTCACGTCAGTACTACCGGTACTCTCTGGAATAGAAGCCCTCCTCACGC
TGGAGAAAAAAAAACTCCTGCCCCGGTAACTTCTCAGTATTTGTGGGTTG
GGTGAGTACTGCCTGATGCAATGGTGATTGATCTCTTTATCTCCCAAGCC
TCTTACGGCTGCACCTCTCCTCTCCTTCCTTATCCTGCACGCAGGCCATC
AAACCAGACGGCATTCAGAGACAGCTGGTGGGCGAAGTCATCACCCGATT
CGAGAAAAAGGGATACAAGCTCGTCGCCATGAAGGTAATTAAAGCAGGCA
TCTATCCGTCGCCTGCCGTGCGGCAATCGTTATGCAATCATAGTGCGGAA
GTCGTGAGTTCGATTCTTCAGTGTGGCGAAAAGCGTGAGAACGTGAGTAA
GTGAAATTCAACAGTTAGTTTGACGAGTTGTATCGCGATAAAACATCGTA
GGGCGAGAATCGGGGAGGTATGGGAAGATGATTCGTGACCTACAGGCAGG
ATGGCAACGTTTCATTAGATGGGGTTGGTAACCCAGCACGTTGAGGCCAT
CGGCTATACTAATAGGAAGTGAGGTAAAAACGAAAACAAAAAACAAAAAA
ACTCTCGAACCCTTGAGTGCATACGGACTAACCGTGATTGTTGGCGAGCA
GTGCCAGAATGCGGAGAATCCAGGCTTGAAAAGTTGAGCATTTTCCTTAT
GCTGTTAGAAAATGATATCAGAAAACGACTTTTCTGATATGGGACCAAAA
ATCCGCTTCTTATGTTACCAGAAAAGGCCTTTTCTAATATGAAATTTTCT
GATGACATTTTCTGATAGCCCCATCCTGTTGGAGAATCAGCTTTTTCTGA
CAGGATGCACTTATCAGAAAAAGGTTTGAATTCCCACCGAATGTCAAGTT
GCAGCGGTGACGGTCGCGGTGGCAGCATATCGACGCCGCAAGCAGAGAAT
AATATTGATATATACCAGTCAGCTGGTACTCGTTTTAGGGTTACTCGACG
AGGAAGACGCAGTCGTGTCCAGAGAAAGTTTCTGTGTGTAGCCTTTGTAG
CGTGCGTTGTGCAGCAGTTACGTCCTCGGTACAGATTGTTAGACGCTGTT
GGAGGCCGCTTGCACAGCTGTACTGTTGGCATGGCACGTTGCGGCCTTCG
AGCTGCATTCGTGTGACTGCGCAAGCCCCAAACAAATGAAGACCCGTGCT
GTACCACGCCACGGTTGTAAGTAGGTGCACAAGGTGATGTGCCTAGCCGT
AACAGCAGTCCTTCGCTATGTGTTGTGGGCGTGCCCCGGACGGACGGACG
CAAAAAATTCAAATCCGCCTTCAAATGACAGACCTTGTGTAGGTTGGAGA
CATGCATGGATGACTGTGTCGTGGCGGTGACGGCCACAGTGGCAGCATAT
TGACGCCGCAAGCAGAGAATAAAAAATGTCAATCAGTTGGCACTCGTTCC
ACGTGGAAGACGCAATCGTGGCTGGAGAACACACACCTGTAGCCTTTGCA
ATGTGCGTCGTACAGCAGTTACGTTCGTTCTCGGTACAGTACATATTATA
TGTTTAAAGAAAAATGTTGTTAGAGGCTGCTTGCACAGTACTGTTTGCAT
GGCACGTTGCGGCCCTCGAGATGCTTTTGCGTGGTTGTGCAAGTCTGAAA
CGATCGAAGATCACGTGCTGTACTACGCCACGGCTGTAAGTAGGTGCACA
AGCTAGGCAATGAGCCTACATGCAGCAGTCCTTCGCGGCGTGTTGTTGGT
GACAAAATCATCTAAAACATACAGCAGACTGTGTAGACTATATACATTGA
ACAGACTCTCTCCAATAACCGGCCGATGAAAACTACGTTTTTAGTGCCCT
TTTTATTTTGATTAAGGTGTAAGATGAGAACGGGTGCTTGGAAAAATCCT
GTTGGAAAATGCCGTTTTCTGACACCATTTTTTCAACAGCATAAGAAGTG
GCCTAAACACCTACTTGTATTAATAGTACCTGTAGGTGAAGAAGAAAATA
AGTCCGGCCAAAAATTATTTAAAAGAAAAATCTGAAGGGATCTATATTCT
GAAATGCCCGCAGGCACCCGGCCAATGACTGCTCTGGCTTTCGGCAGGGG
AGCTAAAGAGCAATCCAACGATAGGGGGGAGGGGACATATTGTACCCATC
CCCTTTCCCCTCTATCGTTGGATTGCCCTAAAGTACAGCAAGTGAAGCCT
CTCGTGGATCCCAAGATTGACGCGTCTAGAGACGTAGAACAGTATTAAAT
AGGAATAAACAGTACAGCTACAGGTGTACTGTACACACCTCGATCTAACC
ATTTTCTGAAAACACCACGAAAATACGACTTTAATATTAAGACGACTACA
AGAAGTACTCTCTCTGTAAACACTGCTCAGCAGTATTAACTAATAGTAGA
TCTTCAAGACAGTATAGTATCATACTGATTTTGCACTTGTTTGAGTCACA
AGCTGAAAATACTAGAAAATACTAGAAAATACTGTTTTGTCTTTGTCTTG
TTAGAGCCACAATGGCGCGGGGAGGGGGAGGGGGAAGCTCTCCTGGCAGG
ACATATCGATCGAAATACATTACAGAAAATGAGTTTGGAAACAGGTGCAC
AACGAATGAATGAAGTTCAAGGTGAATCAGGAGTACGGCAGAGGTCTTGT
ACCAAACGCGCAAGACCACACCTTCATTATTCATGATTTCCATCCATCCC
TAAACAGCAATAAAACCAGGCAGGCACTGGTCTTGTTGTGTGCACTCGAG
TACTTAAATTTGAAGAAAAATCTGAACACATCGAGATGGGATCATCGGCT
GCAAATACAAAATCTCTTCATGGCATTTAAACGGGTTCCTCGATGGTTTA
AAGAAAAATATGAACACATCTAATAATCATCTAATCATTGTAGGCATCCG
CCCTCGGGGGGGAAATTTGTCAAAAGGTTTAGGTGAGACTGTCTGTGGGA
TGTGTGCAGTAGTAGTAGTCGACCGAGTGGTCTAGTGACAGTGAAAACCT
CGCATACAGTACCCACTACTGAAAGGGTCGTTCGAAACGAAAACCAATAT
TTCGAAATTTACGAATTTCCCGCTTCCCTGGGTGTATGTATGGTCACACA
TATAGCAAGAGTGTGAATCAACTGGGTAAGGTTGCCAGTCCTGCACGTGG
TCAGCTGGACAGGAAAAATGAATATTTCCCTGTCCGCGTTCGTGCCTGAG
AATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGC
TCATCTCCATGCTCAGGCTGAATCTTCCACGGCGGCGTCCATTTGTTCAT
TCATAACCGCCATACGCCATCGAGTCAGTCCCGAGTTTATCGGGTCGCGC
AATTGCGTACCGATGGCGTTCACTGCCGAGAGCCCGCCGGCACGGGGCCA
GTAAACCTCAAAGTAGTTCCGAACGAGTGCTGTCTCAGCAGGTCACCATG
GGCCAATTAATATTCGCCCCTGTTTCCCCCACCCACTATTGGTATGAAGT
GGGCATGTTGAAAGTACACAGTATAATAATAGCCTAATTTATGGTACAAC
ACCACCGGGAATCACTATGTATTGTAGTATTAATAGTAGTTGTAGAACAA
ATCTATTATATGGTTTTGCTTTGATTTTTTCCCTCGGAAGCCCACACACA
TAGGGATATTAGGGTATGTGCTGATAATCGAAAGGAAAGGGGAACATGAA
CATGACCCGGCGAAGAAAAGTCCTGGAAATTTCGCGCACAAGTAGAGCGG
GAGTAGATGCTATCAATAATTCCAGATAACTCGTATCCATACCTACCTAG
AGCCACACGTGTATCATGTTGCCGGGTATTTAGAAATTGAAGTACTAATG
GAACAAGTATCGCCTCCGTGACCTACTAATTACTAATAATAGTAATATTC
ATAGTTGCTGACTGACTTGAGTCCCTTTTTGCAACGACCTCTTCCGTCTC
CATTTTGGCGTTTTTTTTGTGCGACTGCGATATTGCAATGCAACCTGTTC
TCGGAACTTTGGCGGCAACCGCCTGTGGGCTTTCGTCGAAAACCTGTCAC
TCGCTCGTGCTGTTCTCTAGATGATCTGGCCCACGAAGGAGATGGCATCG
AATCACTACGCCGGTGAGGGAGGGGGTACAGGACGCAAACCTCGCCGCGG
CCATTTCTAGATTTTTTATCGAAGGCACTGTCACGACTCGATACGCCGTC
GTGTCCCGCGATCGCTCCCGCACCGATTGACTCCGCGTCGATCGCACCGG
TACACACACGCGAACCATGCTACCCGTGTATGCATAAGCTGCTTTGCTGT
CCCGTGTCTCTTGCACTCTAATCGAATCGTGACAGATCTCTCTAGGAAAC
CCTTCTTTGCCGGCCTCGTGAATTACTTCTCCTCCGGCCCGATCGTCGCC
ATGGTGTGGGAGGGCCCCGATGTCATCCTGACCGGGCGCAAGATGCTGGG
CGCCACTAACCCCAACTCTTCGGATCCAGGTGCTGCACGCTTGTTTCCGC
TCTGGGCTGACCTCCGGAGGGGTCTCCTCTAAGTGCCGGCGTGTTTTTTT
TGTTTGTTTTGCAGGAGAGCTTTTATCCCTTTACAAGGAGCACTTTTCCT
GTCACGTTGTTGTGCTGCCTCCGGTCTGTGGATGGATCAGTTAATAGACA
GATCTCGTCAAAGACGGTCCAGTACTTTTTGTTTTTTTACGGCGTGGGTT
GCTCGGCCGATGCTACTCCACCTCCCGAGGTCTGTTGTACAGAGTACATA
TATATTATCTCGCGATACTTTTGTGTACTGTACCACCGTGCGTTAGGATT
GGCCCCCTGTACTGTGCAGGAGGCAGGTTCTTATGTGTCTATATGCTCAA
TTAAAGGATTATAAATCTCACCCGCCAAGCCAAAATCGCGCAGGGTCAAT
CCGCGGAGACTACTGCATCAGGGTAGGCCGCAACCTCATCCACGGGTCGG
TGAGTCTCTCTTAAAAAACGTTTAGCGGGAGCGTACGAGGCAGCGCGTGG
TTGTCAATTGAGACGTCACCGTTTCGCTCTATTGAGATGTCAGCCGAGGT
AGCATTGCCGAGCTTACCAGCCGTCATGCGCGGCGGGGCAAGCGACTTAT
TTTTATATGGCGCGATCCGTTGGAGGTAATGTAGAGAAGGTATTTCGTGG
GGCGTGAGGGTTATGGTATGGCTTGTTTTTTGCGTTTTGCCTTGGTAAGC
ACGCCCGAATCTCGCCTTCTCGCGTGATCATCACACACGCACATGCGCAA
TACAGTTTTCTGTCGTTGGCAACCTACTAAAATGTATTTACATTTTTTTT
TTTTCCCTTCGTACGAGCAGCGTGGGCGAGAGGCTGCTCCCCATTCTTTC
TTCTGTTTTTGTCATAATCCCCCTGTACAGCAGACCACAGGCGGGATTAG
CCACCATGTAAGGTAGATTTTTCCCTTTGGCAACCAATACGCTGAATGCA
TGAAACAGCTCTGGCTAATGTGTTGTTTTTCGTACATGTATGTCCTGTCG
AGCAGGACGGACCCGACAGCGCCCAGCACGAGATCGGAATGTGGTTCACC
GAGGTGAGATAGATGGGTGACGTTTTGGCCACTAGTGTGTGAGTTCCGAC
CTCGAGTTGGTGATCTGTCTTGCCTAAATCTGAGGCAGCATCTACTGTCG
TCGTCTCTGCTCTCGCTCTGTGACGCCACGTCATGCCTCGGACGGAAGGT
GCTGCAGAAGAGCGCCTGTGTTTGCTCTTTCCGAGAGTTAACAAGCAACA
AACAAATCCGTTCGAAATCCTGTAACACCTTTTTGAAATACTAAACTTTT
CATATTCGTGTCGATATAAATACTATTAATATGCATATTAATAAGAGTTG
AAATCTGCACGTTTCGTGTTTTGTCTTTTTTTTGTTCTTCGACTCCGCTG
TGCATGAGAATTTTTGAAAACTGTTTGCGAAGAGGAAAAGAAAAAAAAAA
TAGTATTGCTAATATATAGCCGGTCGACCCCGGTAGCTCAGTAGGCACCT
CGTAACCTTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGAT
TTTTCTCACTAAAAATTAAAAAACCAAACTAAAAATGCCCAACGGGTGGA
GAACGATTAATTCGTTAGTACACAAAATTCGACTTCACGGACGACGAGGG
AAAGGAATGACTGAATCCTTTTCGCGACAAAAATCAAGGCACGCACCGCA
GAAGGAAGGTGGATGAAAAATCCTGTGTGACCTTCCTCCTGTGTGACCCC
GGCTGGTACGTCCAACGAACTTGATGTCCAGAATGGATGGGAAGAAAACA
CAAAACACAACACAATAACATACAGTACGACCGCCGTGGGTGAGAACTGC
CTCGTTTCCTTTTTTCCCCCCATCGTTTAGTTGCGCTAAGCATATATATA
TATATATATAATATGTATATATGAATATATATATGTTGCATTCGCTTAAT
CTCTTGGACTGTTTCGTGCGTGTGATGGCACCGGGTACAAACCCCACCCC
CCTGCCCTGTCCTGCACCGCACCGGCAGGAGGAGTGTTCGGCGTGGGACC
GTACCCTGGATGCGTGGATCACTTCGGATAACTGATAACTGAGGCCTTTT
TCACGCCTTTGAGCTACAATATAGGTAGACAATACAAGAAAAAAAAAAAA
AAAAAAAATCTACCGAGCGCTTGAGGAGAGAGAGAGAGAGAGAGGAAAGG
AGACGAGAAAAGGGGGGCGAACAAAAATAGTGGTACAACGCGATGGAAGC
CAGCCCAAGTCTATAATTATTATTATAGTAGAGAGCTTAGACTAATAAGG
TAATGCGGTAAAATCAGCGATCAATATTATAACAGTATTATAGGACATTG
AAAGTAACAAAACCTTCGCACTGATTTGATATGTACTGTAGTGAAGACAA
GTAATGTGATGGGGACCCACTTGGTTATACTCCACGTACTGGTAGAGGTT
GATATGCTGGGTGTACTGTTTGGCCGCCTGAAGGGATTTTTTACTCGGAG
GGTGAAGAACATATTATCGTGTAATAAGGGGTGTCCTTTTGGATGCTGTC
TGAAAGGAGGTTTTGGATGCCGCAGCAGGGAGAGAGCGAGAGATCTGAAC
GACATCAATGATCTCAAATGACAAGAAATAACCTTCTCTCAAAAGCTCAA
AAGCTCAATCCTGATTAATCCTGAGGCAGGCAAAGCGAGATCCCACCGGG
AAAACTGCATGTAAAACGAAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1237:72613..80333+

>mRNA_F-serratus_M_contig1237.1792.1 ID=mRNA_F-serratus_M_contig1237.1792.1|Name=mRNA_F-serratus_M_contig1237.1792.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig1237:72613..80333+ (Fucus serratus male)
ATGTTCTCGCGCGTAGCAAGCATGGCGGTCCGTGGCACCAGCAGGATGGC
TGCTGCTCGCCGTCTCTCGTCGCAAGCCTCCGCAACATTGACCCAGGCGT
CATCCTCCACCCTACGCTACGCGACAGCAAGCGTGGCGTGCTTGGGCGGC
TTGACATTCGCCGCTCAGATGCAAGAGTCTTCTCCTGCCATGTGCGCCAG
ATCCAGCCCCTTCCCGTACACTGGTGCACCGGGCACTGGCAATGAGCGGT
CATTCATCATGTTCTCGCGCGTAGCAAGCATGGCGGTCCGTGGCACCAGC
AGGATGGCTGCTGCTCGCCGTCTCTCGTCGCAAGCCTCCGCAACATTGAC
CCAGGCGTCATCCTCCACCCTACGCTACGCGACAGCAAGCGTGGCGTGCT
TGGGCGGCTTGACATTCGCCGCTCAGATGCAAGAGTCTTCTCCTGCCATG
TGCGCCAGATCCAGCCCCTTCCCGTACACTGGTGCACCGGGCACTGGCAA
TGAGCGGTCATTCATCGCCATCAAACCAGACGGCATTCAGAGACAGCTGG
TGGGCGAAGTCATCACCCGATTCGAGAAAAAGGGATACAAGCTCGTCGCC
ATGAAGGCCATCAAACCAGACGGCATTCAGAGACAGCTGGTGGGCGAAGT
CATCACCCGATTCGAGAAAAAGGGATACAAGCTCGTCGCCATGAAGATGA
TCTGGCCCACGAAGGAGATGGCATCGAATCACTACGCCGATGATCTGGCC
CACGAAGGAGATGGCATCGAATCACTACGCCGATCTCTCTAGGAAACCCT
TCTTTGCCGGCCTCGTGAATTACTTCTCCTCCGGCCCGATCGTCGCCATG
GTGTGGGAGGGCCCCGATGTCATCCTGACCGGGCGCAAGATGCTGGGCGC
CACTAACCCCAACTCTTCGGATCCAGATCTCTCTAGGAAACCCTTCTTTG
CCGGCCTCGTGAATTACTTCTCCTCCGGCCCGATCGTCGCCATGGTGTGG
GAGGGCCCCGATGTCATCCTGACCGGGCGCAAGATGCTGGGCGCCACTAA
CCCCAACTCTTCGGATCCAGGGTCAATCCGCGGAGACTACTGCATCAGGG
TAGGCCGCAACCTCATCCACGGGTCGGGTCAATCCGCGGAGACTACTGCA
TCAGGGTAGGCCGCAACCTCATCCACGGGTCGGACGGACCCGACAGCGCC
CAGCACGAGATCGGAATGTGGTTCACCGAGGACGGACCCGACAGCGCCCA
GCACGAGATCGGAATGTGGTTCACCGAGGAGGAGTGTTCGGCGTGGGACC
GTACCCTGGATGCGTGGATCACTTCGGATAACTGAGAGGAGTGTTCGGCG
TGGGACCGTACCCTGGATGCGTGGATCACTTCGGATAACTGA
back to top