mRNA_F-serratus_M_contig1208.1636.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 138 bits (348), Expect = 9.690e-39 Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = 1
Query: 52 KRVAASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMYEIQDILNIA-----GDYKLQVAWIGLDDEDATWEPVEVMVKDVPNIF 468
+R AAS G +P+F VGDYV+VARVR G KL +TWTGPWRVVS HV+ VQ+IV G+ ++VHVAR+R Y+DS L + ++ + +F+ + QG +E++ ILNI Y ++V W G ++++ TW+P+ + +D P
Sbjct: 3 QRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 146
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 143 bits (361), Expect = 4.600e-38 Identity = 69/159 (43.40%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 7 LQKEVLGGVRAARDRKRVAASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMYEIQDILNIA-----GDYKLQVAWIGLDDEDATWEPVEVMVKDVPNIF 468
L K++ V R R+R AAS G +P+F VGDYV+VARVR G KL +TWTGPWRVVS HV+ VQ+IV G+ ++VHVAR+R Y+DS L + ++ + +F+ + QG +E++ ILNI Y ++V W G ++++ TW+P+ + +D P
Sbjct: 243 LHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 401
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 144 bits (362), Expect = 8.460e-37 Identity = 70/159 (44.03%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 7 LQKEVLGGVRAARDRKRVAASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMYEIQDILNIA-----GDYKLQVAWIGLDDEDATWEPVEVMVKDVPNIF 468
L K+V V R R+R AAS G +P+F VGDYV+VARVR G KL +TWTGPWRVVS HV+ VQ+IV G+ ++VHVAR+R Y+DS L + ++ + +F+ + QG +E++ ILNI Y ++V W G ++++ TW+P+ + +D P
Sbjct: 1466 LHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 1624
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 6.250e-21 Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 1
Query: 7 LQKEVLGGVRAARDRKRVAASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMYEIQDI--LNIAGD---YKLQVAWIGLDDEDATWEPVEVMVKDVPNIFSG 474
L KEVL V+A+R + R +A GS+P F VGDYV+VA A +L HV+ VQ+IV+GE ++VHVAR+R Y+D+ L + AE + +F+ QG +E+ I +++A D + ++V W+G D E+ TWE + M P
Sbjct: 1568 LHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVA-------AERL----------------HVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFDVEVEWVGFDKEENTWEELSKMWDAAPQFVKS 1705
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6G0RJA2_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RJA2_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 8.780e-20 Identity = 51/133 (38.35%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 79 MPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGM-YEIQDILNIAGD-----YKLQVAWIGLDDEDATWEPVEVMVKDVP 459
M FEVGD+VL A V + S SKL W GP +V + S + ++++VTG+ +E H +R++ YSDS L + E L + H + + L + D YKL V W GL +++ +WEPV+VM++DVP
Sbjct: 1 MAQFEVGDFVLYADV-SAHSRSKLCVRWCGPAQVTAATSNWIFKIKNLVTGDEREAHASRLKFYSDSSLEVSEE---LLQHVAHNSEGHVVSKFLRASYDTAAKGYKLLVRWRGLSEQEDSWEPVQVMLEDVP 129
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6A3EE69_9STRA (Chromo domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EE69_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.090e-19 Identity = 55/149 (36.91%), Postives = 81/149 (54.36%), Query Frame = 1
Query: 31 VRAARDRKRVAASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGM-YEIQDILNIAGD-----YKLQVAWIGLDDEDATWEPVEVMVKDVP 459
VRA + R M FEVGD+VL A V S SKL W GP +V + S + ++++VTG+ +E H +R++ YSDS L + E L + H + + L + D YKL V W GL +++ +WEPV+VM++DVP
Sbjct: 56 VRARGRQVRGQKQGTRMAQFEVGDFVLYADVW-AHSRSKLCVRWCGPAQVTAATSNWIFKIKNLVTGDEREAHASRLKFYSDSSLEVSEE---LLQHVAHNSEGHVVSKFLRASYDTAAKSYKLLVRWRGLSEQEDSWEPVQVMLEDVP 200
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6A3PHN2_9STRA (Chromo domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3PHN2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.160e-17 Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1
Query: 43 RDRKRV---AASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMYEIQDILNI------AGDYKLQVAWIGLDDEDATWEPVEVMVKDVP 459
+++KR+ A + G+ +F+VGDYVL +RV + +KL+ W GP+ V PH ++ ++TG T EVH +R+R Y+DS L + E + E +QGM D + A ++L V W GL D +A+WEP++ + +VP
Sbjct: 41 KEKKRLYDMATAKGTTTNFDVGDYVLWSRVDERLAHNKLLAQWVGPFAVTEA-RPHSFMIRHLLTGSTYEVHGSRLRFYADSSLDVTKE---ILEFVSNQGMLLGVDGFSDHRYNADASRWELLVKWTGLQDIEASWEPLKSLKAEVP 184
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6G0JFH4_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JFH4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.500e-17 Identity = 54/155 (34.84%), Postives = 86/155 (55.48%), Query Frame = 1
Query: 7 LQKEVLGGVRAARDRKRVAASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMY----EIQDILNIAGDYKLQVAWIGLDDEDATWEPVEVMVKDVP 459
+ +EV+ +R R + + S GS +F VGD+VL +R+ + KL+ W GP+ VV PH ++ +VT +T +VH +R++ YSDS L + E + +QGM I+ N GD++L V+W+GL DE+ +WE + M VP
Sbjct: 82 MHREVVD-LREKRRLQNMQLSKGSPCNFAVGDFVLWSRIDQRLTVDKLLARWVGPFEVVET-RPHSFVIRHLVTDQTFDVHCSRLKFYSDSALNVDEE---MLAHIGNQGMLLGVEAIKHHRNEHGDWQLFVSWVGLQDEEDSWESLRSMNAQVP 231
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.680e-17 Identity = 53/148 (35.81%), Postives = 89/148 (60.14%), Query Frame = 1
Query: 43 RDRKRV---AASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMY-EIQDILN-----IAGDYKLQVAWIGLDDEDATWEPVEVMVKDVP 459
+++KR+ A + G + +F VGD+VL +RV + SKL+ W GP+RVV H ++ ++T + EVH +R++ Y DS L + AE L E QG+ ++ I+N ++ ++++QVAWIGL+D + +WEP+ + DVP
Sbjct: 207 KEKKRLYEMARAKGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEARQ-HSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAE---LKEHVAKQGIVLGVRAIVNHRNNPVSNEWEVQVAWIGLEDVENSWEPLRRIYADVP 350
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.780e-17 Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 43 RDRKRV---AASAGSMPSFEVGDYVLVARVRNLGSASKLMTTWTGPWRVVSGGSPHVHNVQDIVTGETKEVHVARMRAYSDSPLALGAEAQGLFETTKHQGMY-EIQDILNIAGDYKLQVAWIGLDDEDATWEPVEVMVKDVP 459
R++KR+ A + G + +F VGD+VL +RV + SKL+ W GP+RVV H VQ ++T + EVH +R++ Y DS L + AE L E QG+ ++ + + +++QVAWIGL+D + +WEP+ + DVP
Sbjct: 1061 REKKRLYEMARAKGRICNFVVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEARQ-HSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAE---LKEHVAKQGIVLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVP 1199 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1208.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1208.1636.1 >prot_F-serratus_M_contig1208.1636.1 ID=prot_F-serratus_M_contig1208.1636.1|Name=mRNA_F-serratus_M_contig1208.1636.1|organism=Fucus serratus male|type=polypeptide|length=159bp EELQKEVLGGVRAARDRKRVAASAGSMPSFEVGDYVLVARVRNLGSASKLback to top mRNA from alignment at F-serratus_M_contig1208:82872..83366- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1208.1636.1 ID=mRNA_F-serratus_M_contig1208.1636.1|Name=mRNA_F-serratus_M_contig1208.1636.1|organism=Fucus serratus male|type=mRNA|length=495bp|location=Sequence derived from alignment at F-serratus_M_contig1208:82872..83366- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1208:82872..83366- >mRNA_F-serratus_M_contig1208.1636.1 ID=mRNA_F-serratus_M_contig1208.1636.1|Name=mRNA_F-serratus_M_contig1208.1636.1|organism=Fucus serratus male|type=CDS|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig1208:82872..83366- (Fucus serratus male)back to top |