mRNA_F-serratus_M_contig1204.1619.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1204.1619.1
Unique NamemRNA_F-serratus_M_contig1204.1619.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 9.880e-32
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    4 NPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
            +PT FD CSF+GN A ATGGA +SA+GQD F   +F GN+A  GGALR+ G+AS++NCSF DN SD GEG  +SN+G++S +    F +NVF+C   TFLD N S D +  +C+G
Sbjct:  619 SPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAG 733          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.450e-31
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
            D PT FD C FIGN A++TGGA++SA+G+D   N++F+GN A  GGALRL G A I NCSF +NTSD GEG  VSN+G++SS+T+++F  N F+C   TF +   S D +  IC+G
Sbjct:  901 DLPTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNG 1016          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.620e-31
Identity = 67/114 (58.77%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
            PT F  C F  N A ATGGAVDSASGQD+F +T+F+GN+A  GGALRL G AS+ NCSF +N SD GEG  VSNVG +S ++++TF  NVFNC P TFL++  S D     CSG
Sbjct:  413 PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYT-SGDALDEACSG 525          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.670e-31
Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    4 NPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
            NPT FD C FI N A ATGGA+DSA+GQD F N+ F+GN A  GG LRL G+AS+D CSF DN SD   G  VSN+G + S+ + TF  NVF+CDP  +LD+N S + Y   C G
Sbjct:  649 NPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGG 763          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.960e-29
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDF-NKSEDLYGTICSG 348
            DNPT FD C F+ N   +TGGA++SA+G+D FN ++F+GN A  GGALRL G+A   NCSF  NT+D GEG  VSN+GY+S++ S+ F  N F+C    +LDF  +S+D +  +CSG
Sbjct: 1011 DNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSG 1127          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.530e-29
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDF 309
            PT F  C F  N   ATGGAVDSASGQD+F +T+F+GN+A  GGALRL G AS++NCSF +N SD GEG  VSNVG +S +++++F  NVFNC P TFL++
Sbjct:  407 PTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNY 507          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.700e-29
Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDF 309
            PT F  C F  N A ATGGAVDSASGQD+F +T+F+GN+A  GGALRL G AS+ NCSF +N SD GEG  VSNVG +S +++++F  NVFNC P TFL++
Sbjct: 2326 PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNY 2426          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 9.070e-29
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
            PT F+ C F  N A+ATGGAVD+A+GQD F N++F+GN A  GGALRL G+A ++NCSF +N SD G G  VSN+G++SS+++ +F  NV+ C    FL+  +S  LY  IC G
Sbjct:  370 PTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDG 483          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.360e-26
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    1 DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNK-----SEDLYGTICSG 348
            DNPT FD C F+ N   +TGGA++SA+G+D FN ++F+GN A  GGALRL GS    NC+F  NT+D GEG  VSN+GY+S + ++ F  N F+C  + +LDF +     S+  +  +CSG
Sbjct:  737 DNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSG 857          
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.580e-25
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    4 NPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
            NPTIF  C F+ N A ATGGAV++A+GQDVF + LF       GGALRL G+A+++NCSF +N S+ G G  VSN+G +S + + ++  NVF+C    FLDFN S D     C G
Sbjct: 1458 NPTIFTRCRFVNNQAAATGGAVETAAGQDVFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDG 1572          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FTL7_ECTSI9.880e-3253.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K0E9_9PHAE3.450e-3153.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHH1_ECTSI4.620e-3158.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G301_ECTSI4.670e-3155.65Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTI5_ECTSI1.960e-2951.28Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5KR67_9PHAE3.530e-2959.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG7_ECTSI3.700e-2960.40LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2Z8_ECTSI9.070e-2951.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1P8_9PHAE3.360e-2647.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI5.580e-2549.57Polymorphic Outer membrane protein G/I family n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1204contigF-serratus_M_contig1204:210737..211675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D8LHQ8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.9770195-CDS-F-serratus_M_contig1204:210736..2110511622929120.9770195-CDS-F-serratus_M_contig1204:210736..211051Fucus serratus maleCDSF-serratus_M_contig1204 210737..211051 +
1690962713.6315477-CDS-F-serratus_M_contig1204:210736..2110511690962713.6315477-CDS-F-serratus_M_contig1204:210736..211051Fucus serratus maleCDSF-serratus_M_contig1204 210737..211051 +
1622929121.0140295-CDS-F-serratus_M_contig1204:211640..2116731622929121.0140295-CDS-F-serratus_M_contig1204:211640..211673Fucus serratus maleCDSF-serratus_M_contig1204 211641..211673 +
1690962713.6435425-CDS-F-serratus_M_contig1204:211640..2116731690962713.6435425-CDS-F-serratus_M_contig1204:211640..211673Fucus serratus maleCDSF-serratus_M_contig1204 211641..211673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1204.1619.1prot_F-serratus_M_contig1204.1619.1Fucus serratus malepolypeptideF-serratus_M_contig1204 210737..211673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1204.1619.1

>prot_F-serratus_M_contig1204.1619.1 ID=prot_F-serratus_M_contig1204.1619.1|Name=mRNA_F-serratus_M_contig1204.1619.1|organism=Fucus serratus male|type=polypeptide|length=116bp
DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRL
GGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTF
LDFNKSEDLYGTICSG
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mRNA from alignment at F-serratus_M_contig1204:210737..211675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1204.1619.1 ID=mRNA_F-serratus_M_contig1204.1619.1|Name=mRNA_F-serratus_M_contig1204.1619.1|organism=Fucus serratus male|type=mRNA|length=939bp|location=Sequence derived from alignment at F-serratus_M_contig1204:210737..211675+ (Fucus serratus male)
GATAATCCGACAATTTTTGACGGCTGCAGCTTCATTGGGAACATTGCTCT GGCTACTGGTGGGGCGGTCGACAGCGCCTCTGGTCAGGATGTCTTCAACA ACACGTTGTTTAAGGGCAATGAAGCTAGGGCGGGGGGAGCTTTGAGACTC GGTGGTTCGGCGTCTATCGACAACTGTTCATTCGAGGACAACACTTCCGA TCTAGGCGAGGGACCAACAGTGTCCAATGTCGGTTACATGTCGAGCCTCA CGAGTAGCACCTTTATGAACAACGTCTTCAACTGCGATCCGCAGACGTTT CTCGACTTCAACAAGGTATGTCATATATGTTTTTTTTCTTGCGTCGTGAT TGATCGTCAACGTAACCGCAGCTACTGTATTTGTAGAAAATGTGTTTTTA CAGTTACTACTTACTATGCCTTTCTTCGTTGTGTGTGTGTCAAGCTATAC TAAAATCTAGAATTCAATTTGTACATTTGTTCCCAGTGTGGTCATCAACT CTCTCCACTGTCATCGGCAATGGGGACTTCTTGGGCGGTATGACGCTTAT AGCAAATACCCCAAAACAGCAGCTATACTCTACCGGTAAAATGTGTTCTC TTCTTTTTTACGATCACCTTGAATAGTTTGCATGTGGCGAGAAGGTGTAT GGAAACACTGGTAGTGTACATGTTGCCTTAGAGGTTATGACTGAGTAAGT ATATAGAAATTATAATCGAGCTTACTCGCTATACTTCCATCCACAACGTT ACCGAGAACGTCTTGAATCGCCCACGTGACATCCTTCCTAGAAGAGAAAC CATATAACATTGAGTATCATCTTAGATATGTTTACATGCTTATACCTCCA TAGGTCGAGCCTCCCAGCCGATCCCTCAAGCGTTGATGCTCAACCCGATT TCAGTCAGAGGATCTATATGGAACGATCTGCAGCGGCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1204:210737..211675+

>mRNA_F-serratus_M_contig1204.1619.1 ID=mRNA_F-serratus_M_contig1204.1619.1|Name=mRNA_F-serratus_M_contig1204.1619.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig1204:210737..211675+ (Fucus serratus male)
GATAATCCGACAATTTTTGACGGCTGCAGCTTCATTGGGAACATTGCTCT
GGCTACTGGTGGGGCGGTCGACAGCGCCTCTGGTCAGGATGTCTTCAACA
ACACGTTGTTTAAGGGCAATGAAGCTAGGGCGGGGGGAGCTTTGAGACTC
GGTGGTTCGGCGTCTATCGACAACTGTTCATTCGAGGACAACACTTCCGA
TCTAGGCGAGGGACCAACAGTGTCCAATGTCGGTTACATGTCGAGCCTCA
CGAGTAGCACCTTTATGAACAACGTCTTCAACTGCGATCCGCAGACGTTT
CTCGACTTCAACAAGGATAATCCGACAATTTTTGACGGCTGCAGCTTCAT
TGGGAACATTGCTCTGGCTACTGGTGGGGCGGTCGACAGCGCCTCTGGTC
AGGATGTCTTCAACAACACGTTGTTTAAGGGCAATGAAGCTAGGGCGGGG
GGAGCTTTGAGACTCGGTGGTTCGGCGTCTATCGACAACTGTTCATTCGA
GGACAACACTTCCGATCTAGGCGAGGGACCAACAGTGTCCAATGTCGGTT
ACATGTCGAGCCTCACGAGTAGCACCTTTATGAACAACGTCTTCAACTGC
GATCCGCAGACGTTTCTCGACTTCAACAAGTCAGAGGATCTATATGGAAC
GATCTGCAGCGGCTCAGAGGATCTATATGGAACGATCTGCAGCGGC
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