mRNA_F-serratus_M_contig12.1528.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1528.1
Unique NamemRNA_F-serratus_M_contig12.1528.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: A0A6H5JHA9_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.660e-54
Identity = 113/233 (48.50%), Postives = 140/233 (60.09%), Query Frame = 1 
Query:   94 MKIVEYFLLALIPTLGNSFHA------VRNAI---DSNHHVQLRRGGLKRWRTFAPRPAAIVALAMSSPEGPRDLPRLPPADYTKDAISIGNLGESS-AEFGHIMTNRKLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFGRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEVPGADYPEPQPEVVNET---------GFDVTSILPGPHVG 735
            M+ ++Y L+ L      SFH       +  +I    +  H  L     +R R   P             EGP     LPPADYTK    + NLG+   AE GH+M NRK+TLSFTCN+CD  +T+QINRV+FM+GIVV+ CQ+CNQ+HLIADNLGK+ FP FGRNLEE+MAK+GTPVKRVV+  DGL+HV+  VPG DYPE  P  V            GFD  S+LP  HVG
Sbjct:    1 MQAIQYALVLLCTMAVGSFHVPLPLSVISRSIVPCSARQHHLLLLSAERRGRGIEPEEPLF--------EGPI---LLPPADYTKPGRVV-NLGDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHQVTRDEDEEEALREGFDAMSLLPSAHVG 221
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: D7G2G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.130e-22
Identity = 58/129 (44.96%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:  376 MTNRKLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFGRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEVPGADYPEPQPEVVN---------ETGFDVTSILPGPHVG 735
            M NRK+TLSFTCN+CD  +T+Q++                              FP FGRNLEE+MAK+GTPVKRVV+   GL+HV+  VPG DYPE  P +V            GFD  S+LPG HVG
Sbjct:    1 MLNRKITLSFTCNVCDGHNTHQLD------------------------------FPEFGRNLEEFMAKKGTPVKRVVMDGHGLSHVQVPVPGKDYPEVNPHLVTGDEDEEEALHEGFDAMSLLPGAHVG 99
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: C3Z9E4_BRAFL (DNL-type domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z9E4_BRAFL)

HSP 1 Score: 78.6 bits (192), Expect = 3.530e-13
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:  388 KLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFGRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEVPGAD 657
            K+ L +TC +C   S   I++VA+ +G+V+VKC  CN  HLIADNLG        RN+EE +A +G  V+R+  TE+ L     +V G D
Sbjct:   64 KMQLIYTCKVCQTRSVKIISKVAYTKGVVIVKCSGCNNNHLIADNLGWFSKEQGRRNIEEILAAKGETVRRIANTEELLELAADDVAGKD 153
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: A0A7S3B2Z3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B2Z3_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 5.970e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  388 KLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFGRNLEEYMAKQGTPVKRVVLTEDGLT 627
            +  L F CN+C+  +T+ I+R A+ +G V+V C  CN  HLIADNL  +   +  RNLEE+MAK+G+PV RVV    G+T
Sbjct:   77 RFELQFVCNVCETKNTHSISRHAYNKGTVIVTCPGCNSTHLIADNLNWIEDDF--RNLEEFMAKRGSPVTRVVTGGAGVT 154
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: A0A7S2E315_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2E315_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 1.020e-12
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:  388 KLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFGRNLEEYMAKQGTPVKRVV 606
            +  L FTCN+CD P+++ I+R A+ +G V+V+C  CN  HLIADNL  +   +   NLEE+MAK+GTP  R+V
Sbjct:  124 RFRLQFTCNVCDGPNSHSISRHAYTKGTVIVQCPTCNATHLIADNLNWIEDDF--SNLEEFMAKRGTPATRIV 194
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: K1QRJ0_CRAGI (DNL-type zinc finger protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QRJ0_CRAGI)

HSP 1 Score: 73.9 bits (180), Expect = 1.590e-12
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:  391 LTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWF----GRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEV 645
            + + FTC +CD  ++   +R A+ +GIV++KC  C   HLIADNLG     WF    G+N+EE +A++G  VK+ +  E+G   +++++
Sbjct:    1 MAIQFTCKVCDRRNSKTFSRTAYTKGIVIIKCDGCENNHLIADNLG-----WFQHVKGKNIEEILAEKGEEVKKQI--EEGALEIDSKI 82
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: A0A6P4ZVK6_BRABE (mitochondrial protein import protein ZIM17-like isoform X1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZVK6_BRABE)

HSP 1 Score: 77.4 bits (189), Expect = 2.910e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:  355 SAEFGHIMTNRKLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFGRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEVPGAD 657
            SA  G +    K+ L +TC +C   S   I++VA+ +G+V+VKC  C+  HLIADNLG        RN+EE +A +G  V+R+  TE+ L     ++ G D
Sbjct:  111 SASLGQVEPE-KMQLIYTCKVCQTRSVKVISKVAYTKGVVIVKCSGCDNNHLIADNLGWFSQEQGRRNIEEILAAKGETVRRIANTEELLELTADDIAGKD 210
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: UPI000B8F7400 (DNL-type zinc finger protein isoform X2 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B8F7400)

HSP 1 Score: 74.3 bits (181), Expect = 4.130e-12
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  388 KLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWF----GRNLEEYMAKQGTPVKRVVLTED 618
            KL LSFTC +C+  ++Y I++ A+ RG+V+V C  C+ RHLIADNL      WF    G N+EE +A++G  V + V  +D
Sbjct:   49 KLFLSFTCTVCNGSNSYMISKQAYTRGVVIVTCNTCSNRHLIADNLD-----WFPNSGGTNIEEILAEKGEKVSKFVGIDD 124
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: A0A8B8DGL8_CRAVI (DNL-type zinc finger protein-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DGL8_CRAVI)

HSP 1 Score: 73.9 bits (180), Expect = 1.200e-11
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  391 LTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWF----GRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEV 645
            + + FTC +CD  ++    ++A+ +GIV++KC+ C   HLIADNLG     WF    GRN+EE +A++G  VKR +  E+G+  ++ ++
Sbjct:   80 MAIQFTCKVCDRRNSKTFTKLAYTKGIVIIKCECCKNSHLIADNLG-----WFKHVQGRNIEEILAEKGEEVKRQI--EEGIFDIDNQI 161
[Close]
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Match: D6WHW0_TRICA (DNL-type zinc finger protein-like Protein n=1 Tax=Tribolium castaneum TaxID=7070 RepID=D6WHW0_TRICA)

HSP 1 Score: 72.8 bits (177), Expect = 2.510e-11
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:  349 ESSAEFGHIMTNRKLTLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFPWFG-----RNLEEYMAKQGTPVKRV 603
            ESS          KL L FTC +C   +T  I++VA+ +G+V+VKC  CN  HLIADNL      WF      RN+EE +A++G  V++V
Sbjct:   59 ESSTSTPLAKLEGKLMLGFTCKVCSARNTKFISKVAYQKGVVIVKCSGCNNNHLIADNLN-----WFTDLNGKRNIEEILAEKGESVQKV 143
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHA9_9PHAE4.660e-5448.50DNL-type domain-containing protein n=1 Tax=Ectocar... [more]
D7G2G4_ECTSI1.130e-2244.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C3Z9E4_BRAFL3.530e-1342.22DNL-type domain-containing protein n=2 Tax=Branchi... [more]
A0A7S3B2Z3_9EUKA5.970e-1347.50Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2E315_9EUKA1.020e-1249.32Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
K1QRJ0_CRAGI1.590e-1237.08DNL-type zinc finger protein n=1 Tax=Crassostrea g... [more]
A0A6P4ZVK6_BRABE2.910e-1238.61mitochondrial protein import protein ZIM17-like is... [more]
UPI000B8F74004.130e-1244.44DNL-type zinc finger protein isoform X2 n=1 Tax=Fo... [more]
A0A8B8DGL8_CRAVI1.200e-1138.20DNL-type zinc finger protein-like n=1 Tax=Crassost... [more]
D6WHW0_TRICA2.510e-1142.22DNL-type zinc finger protein-like Protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:136581..147067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue9.2e-16
Seed eggNOG ortholog2880.D7FQE4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ankyrin repeats
EggNOG OGs28PNG@1,2QWAI@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001360.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2103
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1528.1prot_F-serratus_M_contig12.1528.1Fucus serratus malepolypeptideF-serratus_M_contig12 137854..146974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.475547-UTR-F-serratus_M_contig12:136580..1371831622929101.475547-UTR-F-serratus_M_contig12:136580..137183Fucus serratus maleUTRF-serratus_M_contig12 136581..137183 -
1690962705.3245647-UTR-F-serratus_M_contig12:136580..1371831690962705.3245647-UTR-F-serratus_M_contig12:136580..137183Fucus serratus maleUTRF-serratus_M_contig12 136581..137183 -
1622929101.4928067-UTR-F-serratus_M_contig12:137199..1378531622929101.4928067-UTR-F-serratus_M_contig12:137199..137853Fucus serratus maleUTRF-serratus_M_contig12 137200..137853 -
1690962705.3376734-UTR-F-serratus_M_contig12:137199..1378531690962705.3376734-UTR-F-serratus_M_contig12:137199..137853Fucus serratus maleUTRF-serratus_M_contig12 137200..137853 -
1622929101.5951838-UTR-F-serratus_M_contig12:146974..1470671622929101.5951838-UTR-F-serratus_M_contig12:146974..147067Fucus serratus maleUTRF-serratus_M_contig12 146975..147067 -
1690962705.3882942-UTR-F-serratus_M_contig12:146974..1470671690962705.3882942-UTR-F-serratus_M_contig12:146974..147067Fucus serratus maleUTRF-serratus_M_contig12 146975..147067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.5104556-CDS-F-serratus_M_contig12:137853..1379071622929101.5104556-CDS-F-serratus_M_contig12:137853..137907Fucus serratus maleCDSF-serratus_M_contig12 137854..137907 -
1690962705.349204-CDS-F-serratus_M_contig12:137853..1379071690962705.349204-CDS-F-serratus_M_contig12:137853..137907Fucus serratus maleCDSF-serratus_M_contig12 137854..137907 -
1622929101.5286503-CDS-F-serratus_M_contig12:137962..1382231622929101.5286503-CDS-F-serratus_M_contig12:137962..138223Fucus serratus maleCDSF-serratus_M_contig12 137963..138223 -
1690962705.3593423-CDS-F-serratus_M_contig12:137962..1382231690962705.3593423-CDS-F-serratus_M_contig12:137962..138223Fucus serratus maleCDSF-serratus_M_contig12 137963..138223 -
1622929101.5449007-CDS-F-serratus_M_contig12:138619..1387091622929101.5449007-CDS-F-serratus_M_contig12:138619..138709Fucus serratus maleCDSF-serratus_M_contig12 138620..138709 -
1690962705.3664-CDS-F-serratus_M_contig12:138619..1387091690962705.3664-CDS-F-serratus_M_contig12:138619..138709Fucus serratus maleCDSF-serratus_M_contig12 138620..138709 -
1622929101.558634-CDS-F-serratus_M_contig12:139119..1392151622929101.558634-CDS-F-serratus_M_contig12:139119..139215Fucus serratus maleCDSF-serratus_M_contig12 139120..139215 -
1690962705.3735867-CDS-F-serratus_M_contig12:139119..1392151690962705.3735867-CDS-F-serratus_M_contig12:139119..139215Fucus serratus maleCDSF-serratus_M_contig12 139120..139215 -
1622929101.5793352-CDS-F-serratus_M_contig12:146722..1469741622929101.5793352-CDS-F-serratus_M_contig12:146722..146974Fucus serratus maleCDSF-serratus_M_contig12 146723..146974 -
1690962705.3808272-CDS-F-serratus_M_contig12:146722..1469741690962705.3808272-CDS-F-serratus_M_contig12:146722..146974Fucus serratus maleCDSF-serratus_M_contig12 146723..146974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1528.1

>prot_F-serratus_M_contig12.1528.1 ID=prot_F-serratus_M_contig12.1528.1|Name=mRNA_F-serratus_M_contig12.1528.1|organism=Fucus serratus male|type=polypeptide|length=251bp
MKIVEYFLLALIPTLGNSFHAVRNAIDSNHHVQLRRGGLKRWRTFAPRPA
AIVALAMSSPEGPRDLPRLPPADYTKDAISIGNLGESSAEFGHIMTNRKL
TLSFTCNICDEPSTYQINRVAFMRGIVVVKCQNCNQRHLIADNLGKMGFP
WFGRNLEEYMAKQGTPVKRVVLTEDGLTHVEAEVPGADYPEPQPEVVNET
GFDVTSILPGPHVGDSILSDLPSLKYGGVPSDERPPPPEDRNRGVSFEIV
*
back to top

mRNA from alignment at F-serratus_M_contig12:136581..147067-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1528.1 ID=mRNA_F-serratus_M_contig12.1528.1|Name=mRNA_F-serratus_M_contig12.1528.1|organism=Fucus serratus male|type=mRNA|length=10487bp|location=Sequence derived from alignment at F-serratus_M_contig12:136581..147067- (Fucus serratus male)
CTCGTGCGTGATCTCTTCAAGGTGCCGTAAATATCGGTCTCGATTCATCT
GCAGATATCACCTACCCTTTTTGGGGATACGGAGCAAGCGGTAATGAAAA
TAGTAGAGTACTTCCTTCTCGCGCTTATTCCTACGCTGGGGAACTCTTTT
CACGCCGTCCGCAATGCGATCGATAGCAACCATCATGTTCAACTTCGGCG
CGGCGGCTTGAAACGCTGGAGGACTTTTGCTCCCCGGCCAGCAGCAATAG
TGGCGCTCGCTATGTCAAGTCCGGAGGGTCCGAGGGATCTGCCTCGGCTA
CCTCCCGCAGACTATACCAAGGATGCGATAAGCATTGGGAACCTGGTAGG
TCCTTCTATAGCAGTACTGTAGAAGGTGTACGCCACAGTCAAGTACTCTT
TCTTCAAGAACGAACCTGAAAGACGGACCCTTTGTTATAAATAGTACCAG
GTGTCTATACTTTTTATTTGTAATTTGTCGCGCGACTTTTAAAAATGGAT
GTGAACGCATCAAAAGTCCTTTGGAACTGCTGTTGATGTAAAACGGAAAT
GTACCACTCTTTACTTATTATGATATCATAACGTTCCTTGTGTTTTAGAC
TATCATATGTCCCTGCATAGCGGTTAATGTATAGTTTAAAGAAAATCTGA
ACGCATCTAAACCTTCTGATCAGTCAAAAGGTTATTGTTTAAAGAAAAAC
TTTTTGAAGCAAAATCAGAACGCGCCTATGCCTTCCCAGTCAGGAGGAAA
AAATGTCAAAATGTTTAGGTTTGTTGTTGTTGATTCACACGTTCAACGTG
ATGTCCTTGCAACTGAAGAAACTACGGTGCCACAACAAGTCAGCCATAGA
CCTATCAAATGCCAATCCCGCTTGTGGCCACAAGGAGGTACTAAGGATCA
ACGGGTCACTGCCGCCGTTACTTTCAACATGCCCACTTCATACCAATACT
GGGCTCAGAAGGTCTAGGTGCGTTCTGTAAAAAGAAAGGCGTATATTGAT
TGATCCGTGGTGACCTGCTAAGGCAGCACTCGTTCGGAACTACCTTGAGG
TTTACTGGCCCTGTGCCAACGGACTCTCGGCAGTGAACGCCATCGGTACG
CAATTGCGTGACCCAATAAACTCGGGACTTACCCGATGGCGTATGGCGGT
TCAATATAAATATATGGACGCCGCCGCGGAACTTGGGAGGAATCCCGTAA
GTAAGCACCATATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGA
CGAGACTGCCGAAACCGTCTCGCGAGACCAAATTCTCAGGTGCTAACGCG
GACAGGGGAATATTATTTTCCCTGTTCAACTGACCACGAGCAGGATTGGC
AACCTTACCAGGTTGATCCATACTCTTGCCATATGTGTGACCATAGATAC
ATATATCATGGTGACAACCCGCTACTCAGACCAACAGGGATCCAAATCGC
GACAAAAAGTTATGCGACTGCAATGCCATCGACCGATATCAAAACAGTTC
ATCAAACCTCTTTACTCCATATCGAGAGCAACCTCGATCGACTCGGATTG
TTGTCGCCTACCCACGACGAGCATTCTCAGCAACAAACCGGACAAATTGC
GCTCCAACCAGTTCTGATCAACAAGTCCAAGTGCCTCAAGGCTACACATT
GTACAAAATAAGGAAATTGAAATAACGAGGTCCATGGTGGTGGAGGCCTT
GAGCTGGTGAAGCCGGCGCGCGAGCCAGCGTCCAGCCGTCCAAAGCCCTG
TGCATTCCCTGAAAAAGCCCACGAATCTTGCCCGTCCGCGGCTCCTTGTG
GCCCTCGTAGGATAAAATAAGACCGTGGTCAGACATCAGCTTTCAGAAAC
CTCCCGGTTCAAGCCTGTGATTCTCGCGCACAGACGTTCAGCCCTCCCCT
GGCTCGCCGATGATCGAGCTTTTCTCCGCCTTCGCCGAATCTGGTGCGTA
CCCACCCGGTAGAGCGCTATCAAGCTCTCCGCGACAGTGCTCCCTGCCTC
TCGCGTGCCGCCACCCTCCCGAAGGGCATCAAATTGGAGCTCGGAAGAGG
CGCACGCCTGGGAACACCATCCTCAACCGACCATACCGCCGCCGTGTCTC
AACCGACAGGCTGAAACGCGAAGGCAGCCAGTTGGCTGCATCTCTTGAGG
GTGAGCCCGGCCCGACACCCGCCGGAAAGACCCTCCCACACTCATACCCC
GAAGCCAGGTTTCGGAAGAAGAGGGCACGAGGAGTATTACGCTGGACTTT
TCCCCGACATTATACTGTTGACCCAATGTTACTACCATCGGGGAACCCGT
TTAAACGCAATGAAGAGGTTTTGTCTTTGCAGCCTATGATCCCACCTAAA
CGTTTTGACATTTTTTCCCCTGACTGGGAAATGCCCTTTTCTTTAAATAC
CTTCTGAGCATCCACCCACAATCATCAATCATGGGGGGAAAATGTCTAAA
CGTTTAGGTAGGAATATGGGCGGTAAGGACAAAAACTCTTGATGGGATAT
ATTTGGATTTCCCGATTGTAGTAGGATCGAGTCAACAGTTAATATATATA
TATATATCATCTCACTTACCATCATGCCTGTGATCACTAAGGATCTTCGC
ATCTCTCCCCGGTGCACGCCTTACGATTTTTTATCGCGATTCAACTTCAG
CGATCTTAACACTCATCAGCTAATGGTTGAATTTTATTTCCTCACGTTCC
CACGCGTTCCGTTACGGAAGAAAGAACACAAATCCTGCTTTGACAAGAAT
CGAACTCACGGCCCGCACTATTAAATAGCAGATGTGCAGGTTATTAATAC
TAACCAGACCACTCGGTGGACCGTATCAGGGAGAAATCCGCTGTTGTACT
GCACTGTATACTTACCAGATTTAGCCTGATTGTGGAGAACGAGCAAGCTG
GCGCGGGACGGGGCGGCCGGACCCGTCTCGCGAGATCAAATCTCACGCTC
GAACGGGTGCAGGGAAATGCTCATTTTCCCTGTTCAGCTGACCACGAACG
GGATTGTCAACCTTGCCCGGTTGATCCATACTCTGCTATTGATAGAAGTG
ATGACCATACATATTGACGATATATAATAACCATGCAGGTACACCAAAAC
AGAGGCAAAAGTCCACCCTGAACACAACTAAAACTCAGTTATGTTCTAGG
GTATATGCAGTACTTTGTTTGGTACATACAAGTATCGGATTGAAGTATTT
GTGAATCGAGGTCGATTGAAGGGTATACTACTGTACAATAATACAGTATG
GTAGTTCCATAGTGGTAAAACAATGCGATGCAATTTCAGCGCTCGTACAC
CTTGTCTCCCAATATTTGACTCTTACTTAACTCAGGTTTTCATGCTTTCC
GCTACGGCAACCAGGATAAAGTTAACCATCCTATCCAGAGATTCGAAATA
TCTCAAAACCTGCTCTACTGCTCTACTGTTAACGGGACCCCTTTTTCCTA
TAGGAATAGAACACCTCATTTATACAGGCTGGGCTGGCCAAGACGCTGTA
CACATGGCGGAATGAGATTTGCCACGCGGTTTTTACGAATTTTCACCAGA
AAAAGACCGCTCTTGCGGAGAGGACCACCACTGCACATATTATGTTACGG
TTCGTCAAATGGTTATTTTGTATCGGAATCTTTACGAGGCCGCAACTCTT
GATAGAAAACGAGGCGAGCCTTGTAACTACCACCCACGCTCTTGCGGTGC
TCCTGGATATAAATATTTTTCATACTGATTTTAGTATAGGAAGTATCGGC
AGCTCGCCCCTGATTGGCCAGGAACGGTCCAGAAATATTCCAACACCTCT
ATCTACAACATTAAAAAAATAGCTTGATCGGTACAAGAAAGGCGTGAATA
CGGGCGTTTTTGCCTCAAAGTACAATTTTGGTATTAACAATTTGAGGTGC
GAGACCGCTGTTGTCCCCATCGCCACATCTTCCAAACGTAAGAGTGCATA
GTCATGTATCTTTGTTCAATAGGAAGTTTTGAACTTCGAAGGTCATATAC
CGAGGATCGGCGGCCGACTTTTTGGTGGTTTTGTGTAAACTCGGGAATCT
CGCCACAAATGCCACAGAAAGGTGACTACGCACATTTATACAGCTTTCTT
CGGCTTAGTAGCACGTAGAAGGTTGTCCTCTTTGGAGGGTGCTCCAACAG
GGGTTGGGGAGGTCTGCTGGGCAAAACCGCGGTCTCGGAGGCGATATCAA
TTTCAAGAGCGGTCCATATATGTTGTCGTTCCTACTGCTGCATGGCGGGA
GACCTGGCTCGGGCCGACCAAGCACAACTCTCGAAAATATATTGCTACAA
GGGAGATATCAACTAGTCTCGAACCTTTATCTGCAGTATTTACCATGTGC
CACGCAAATGCACACGCGGCGATAGGGCAGCCTACCTGCACCGAGCTCGC
CCGGGGGCCATAGGTCACAGGAGGTATTTGAAGGGTTATGACCGTGGTCC
AATCAGTATAGTGAGAAAAAACGAGGAACGGTCCTGGGCTCCGAGACGAT
TTCCTTGGTATCGTTCCACATGACCTACAAGCCCCCCCAGGCCGGTAGCT
CTGAGTCATAGGATCACGTATGCACCTTGCAGAGCTGCCATGGCGCCGTG
GTTGCTCCGTTATCCGAGGTGCCCCAAGAGGGCTCTTCAGTTTTCTCTTT
TTTATTTTATTTAATAAAGCTCCACTTGGCCTCCCATCCATTGGCTAGCA
GCTACAGTCGTGTGACGGTCTCATCAGTATTTTGGGCCCAAAATATATAT
TTTTCGGCCAAAACGCGTGGGGCCCTATCAACCACGACTCCACTCGGGCG
TGGTATAGTGCTTGCAGTGCTCGAACGTAGTTGTGTTTTGATAAAATTAC
GGAAAATGAATACGAACTCTCCATCTATTACTAAGTACAGCTTCGTGGGC
TCCCCTGGAGTAAGGAAGCCGAATGCCTCTGCATTTTCTACATTGATTTT
CAGATGGGAGGACGGGATTTTGGCGGGAGCTTCTTGCACAGTGCCGGCAA
CATTATTAGAATGTTAATAATTTGTACCAGTATTAATATCAATATTGATG
TTCATATCATTAGTAAGTCTTCGCTTCCGTTTTCAAAACTCCTTGCTATT
TGTGTATTTTATACAGTTAGGTCTACAGTACATGTAGCGTAATCGTTTTG
CCGTTTTCAGGGGGGGCGGCTCCTACATAAAATAATCACATCAGTACATG
ATATCATGTTTGTTAACTCATTTTCCCCGTTCAGCAGACCACAAGCTGGA
TCGGCCTATGACCCCACCTAAACCCTTGGATCCCCCCCCTGACTGACTGG
GGGATGGATGCTCAATGATGCTCAGAAGGTCTAGATGCGTTCAGATTTTT
CTTTAAGCTACTATTAATTACCTATTAGTAGGGTTGGCATTCAAGACGCT
GAAAGCGAGCAACAGAAAATCGAAGTGAATTTTGGATCGAAACATTCATT
GACTGAATTCTCACGTTCGCTGATGTAAAAACTCCAGCTGGTGGTGGTCA
TAAGGTCTTAATCGAAAAACACCACTCCGGAAGGAAAAAACGTAACGGCA
TACTTTCCATGCCATACAAAGAAGAAGCCACATCTCCTGAAAAAAACAAA
AACAAAAATGGTGGACGAGTTAGATGGCGAAAACATACCCGATGAAAACA
TCGCGGCTGCGGTGACCGTCGGAGCAAAGCGTCATTGAGCACGGGCCCAC
TCTATCTGGCATCGCTGTGGTCTGGTCTGGCTGGTGACTTTGTCAGTTGC
TGCTATGATTGCTACCCGATGGTGGGGTGTCCCACTTCATTTTAAAAATT
CAAACTGGGGGGCTAGAGACTTGGATGGCCAGTATTCCACGGACCTCCGT
CTCATTTTTGTTTTGTTTTTTCGTTTATTCGCCCAGTCCATAGACAGGGG
GCACATACAAAAAATGAAATACAGAAATATTAAATATTTACCGCGGAAAT
TAACAATTTTTCATTTTTCATTTTTGTATCTTTGTGGTCCCAACATATAG
CGGTTGGCCTTACGGGGACCAAAAATTCCTGTTGAAAACAATTCGGGGGC
ACTTTCCGCTTGATTTTTCTGCGAGATCGAGATCATGGGACCAAAAATTC
GGACTCCTGATCAGAGGTTCAAACCTGTTGAGTTCGGCATGAAATGGCGT
CACTTTTCTCTACAATGATTTCATTCCCAACTGGAAGTGGCAAAGTGCAG
CCAGCGCATCCTTTGACCACACGCCAACCTCATTGCCACAAGAGCAGTTT
GTCGACGACGTCGAATGGGACCCTCCCTCTATTATTAGGCACTGGCACTG
TCACCAGTATCGACGAACAACGACAAGGTAATGGCTGTAAAACTAGCAGC
TTTAAATGAACCCAGCCCAGACTGGTTATGGCTATCGATTATATTTATTG
TGATGGTGAGAGGTTGGCTGGAGCGCTGTCTTCAGACGAGACCGGACAAG
AGCCGCGTCCCAAACGCACGCGTACCTCCGTCCCTCGACCCGGCCAGCTC
TAGAGCATGTCGACTGGTGTTGGAAGGTCCTTCCGAGGCCAGGGCTACTG
TAGCTACTGTACACGAATCGTCTTCTCGAGACGGGAAGAACCTCGTGAGC
GTTTGCGTCTACTGTACACATTACCGCTCAAATTGTCCGGAGGCATCATC
GATACCGTGTCACGCATAACAATTTCATAGCCCGGCAAAGATGTGACCGC
TAGAGATGTGACCGCTAGTTCCGCTTGTACTAAAAAAGTGCTGGCCTGGC
CAATCGAGCGTGTGTCCCTTCTAACTGGTGCTTCGAAACATCGGCGGGCG
CCATGCTGTGGTGTGTTACCAATGGTACAGTGTTTAAAGAAATCAAAGAA
AAATATGAACGCAGCTAGACCTTCTGAGCATACTATACTATACTATACTA
TACTATACTGTACCCCAGTCAGGGGGGAAAATGTCAAAACGCTTAGGTGG
GATCATAGGCTGCAAAGACAAAACGAAACCTCTTCCATGGCATTTAAACG
GGTTCCCCGATGGTAGTAACATTGGGTCAACAGTATAATGTCGGGGAGAA
GCCCACCGTTATACCGTACACTTACATTAATCGCCATGCAGGGACACCAA
ACATAACAAGAACAAAAACACGTAGCGCATAATTGAATACCTGGTAGGTT
AATACCATAATAATGTACGATGATAATAGTGCCATCGAACCATATTGCAA
TAGGGACTTATAGCGGAATAATCTGAACGCCCTGTTGTCGAAGATAACTG
CCGATTCGCATGTAACGGCAAACGTTTCCTGCCGAGAGATACAGAACACA
TACATGTACTGTATGTACTGTATATACCGCTGAACTTTTATACTTGGAGT
ATAACTATTAATATTACCCTCTACCCCCGTAAGGACCAGTGTTCCACGCT
TACAGTAAAGTACACTATAATACTAGTATAAGAAAAAGGAGAAAAAAAAA
AGACAAGTCTACCTTCACGGGTTCAGCGGAGATGCAACCTTATACCTTAT
ACGGAGTATTCCAAGAATTGCTCTGTAGAGGTATGCATATGGAAGTGCAG
CTCGAGCGTAGAATACACCGCGACGAAAGCGATCGATATAACTTGTAGAG
GTAGATGTTGGTGGGACTTCCTAGGAATTCTAGTATCCTACAATATGCCG
CGATCATGGGATTTTGAGATTTGTCGGATCAAGGTTACGTCGTGCGGGAC
TGCGTATGTACAGCAATTTGTGACATGGAGTTACGACCAGAGGTTTGCCC
ACCCTCCCGCTCGAACTTTCCCTCTGGACTTAACTTTTAACCGACGACCA
TCCCTACCTACACTTGGCACCCTTGGCACCCTTGGCCGCATCGCAACCAC
AGGGCGAGTCTTCAGCTGAGTTCGGCCATATCATGACCAACCGCAAGTTG
ACTCTCTCTTTCACCTGCAATATTTGTGACGAACCCAGCACCTACCAGGT
GAGAGAAGGTTGACGGGTGTCAGGATGCTATATATGCTATATAATGTATT
GATGTTAATACCTGGTAGGAGCCCGACGGTGAAAACCGCAAGGGTTTTTG
CCGTGTTGGTGACGTGTGGTCAGGAGGCGTGAGATGACATCTGGACTAAA
ATCTCCAGGTGAACGGCTCTTGGAGGTTTGTTTGCTCTGTATTCAACGTC
TTTCTTAGATCATTGTGTTCAGCTATCCTCTGTCGCACATGGGGCAGCAG
CCCGGGCCCCGGGATTGATGTTCATTTCAGGCAAAATATTGATCCTCGTG
GCAAGCCGATGTACAGTTCCCGGTCGAGTGTTTGAGGATGCCCCTGATAA
TATGGCATGCTCCTGAATGTTCGTTTACGTGTGTGCACGTACATAACTTC
CTCGGCAGATCAACCGCGTTGCTTTCATGCGCGGAATTGTCGTCGTTAAG
TGCCAGAACTGCAACCAGAGGCACCTCATAGCCGACAACCTCGGCAAGGT
ACTGTTTTGTAGTATAGTGGCTTTTGTACTGTAAGGAGCGTATTCCCACA
CGTAGCTTAGAGGGCAAGCGCGTGCTCGGCAAGTAATAGCGTCTAGCGCT
GGCCTTTTCCCGAAGGTCGTATGATATCTTCTCAACCGTGGTAATATTAT
CACCAGCTGAGCAATTTCACGGCACGAACTATTCCCACGCCATGCTTGGG
TGTAGTGACAACTTGGGGAGGCGTTTTGCACACTATTTATTCTTAATAGT
GGTTCAGTATGTATTGTCGTGTCTCCACTCTACGGTCTGAAAACCACGGA
AGGATCAAGTTGCGCCACAGACAGCAGTGCAGCTATTGATACAAGATCCA
TTTTACGGAGCATTTCCGTCTCCCGCCCGCATTCACGGTCACAGATGGGC
TTCCCGTGGTTCGGACGCAATTTGGAGGAATACATGGCCAAGCAGGGCAC
CCCGGTAAAGCGCGTCGTGTTGACCGAGGACGGCCTTACTCATGTGGAGG
CGGAAGTTCCTGGCGCTGACTACCCGGAACCTCAGCCGGAGGTGGTCAAC
GAGACAGGGTTTGATGTAACGAGCATCCTGCCTGGGCCGCACGTGGGCGA
CTCGATACTGTCGGACTTGCCGTCGTTGAAGTATGGCGGCGTTCCAAGCG
ATGAGGTAGAGGGGGGCGATTGTGACGGGGTAGAGCGCACAGGTTCAGAT
GCGTGAAAAGCGACCCCCCCCCCCCGAGGATCGAAATCGCGGTGTATCGT
TTGAGATCGTGTGAACGTGGCTGAGACTGTTGGAGTTGGAGCATGTAAAT
GTGTATACAGCTGTAGTGTCAGGCAGGCCCTTCTCTTTATTTTCCGAGCA
TCAAAGCGCGCCGAGCCCAGGTAAAAAATGATGCCTTCTAGCAATGGGAT
AGAGGTGTATTGTACAAAGCGGAAGAAAATAACACAGGAAGTGGCACAGG
GTGTGCCTTCGGGCCTAGGGTATGCATAGCTTCGTTGTCGGACGGATACA
AATCGTTCCAAGATACGAATCGGGTTTGCATCAAGCGTTGTATCTGTAGC
AAAATAACAAATTATCCGAGGATTGTACGTACCGGTACAAGTGAGACCGT
TGGGGACTACGGGGATTCTAGCACGACTGCTACAACAGTGCTTGGTGGAT
TCAATAACAGTATCGTTTATCCCCGCATCGGTTTGTATGACAGAGCGGAA
GATGCCAGGGGGGGGGCTGTATCGCTATCATATGCGTCAGTGTAGAAGCA
AGCGTGTGCGCAGTACCGCGGCGGATTTGGATTCGCTGGGATCTGATTAT
CTTAGTGAGAATAACGATAAACAATGGAGGACATTTCTTTTCCTTGCAAC
GCAGGGTTCATGCGCCTTGGTCATGGGTCGTCTCGCAATGCTGAACACCG
TTTGACGAAAACACCGTTTGACGAAAACACCGTTCATAAGGGGGCGGGGG
GGATAAAATGTTTTTGTCATAACACCCGAAAACGTTCGATCTACTGTATA
AACAAATACTCCAATAATGGTTAGTCAACGGTGGCGCGTTTCGGTCCCGA
TGAGACCATCCCTACTGCAAGCGCTGTAATTTCCAGCCGGGGAATACCAA
AATATGAACGTAATTTTGTTTCCTTTTCGGCACTACAGTAAGCCAGATTC
TTGTCATTAGATATTTTCGCGGAGCAGGTTGAGGTGATCTCGCTGCGCTC
GTGATTCCATTCCATCCCTGGCAGGGAGCGGGGAGCACGGCCTTGTACTG
TAGACTAATGGTGTACTGCTGTAGGGTAGTCGGGAATCCATTTCCGGCGT
GTATAATTGATTTACTTTGCAAGATAGTATTAGATTGCCGTGGGTTGGGA
CGTTTTTCTGACCCTCCAAAACCGAATCCCCAATCTTTATTTCGTTTTTC
GAGAGGTTTTCTCGAGCCTCGTTTATTGGTCGTCCAAGCCATTGCGAATT
TGAGTGGGTTTTTTTTTCGGGGCTTTTCTAACTGTGTGTGCGTGTGTGTG
TTTTTTTCCCATTCATTCTGGACATCAAGTTCGTTGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig12:136581..147067-

>mRNA_F-serratus_M_contig12.1528.1 ID=mRNA_F-serratus_M_contig12.1528.1|Name=mRNA_F-serratus_M_contig12.1528.1|organism=Fucus serratus male|type=CDS|length=1506bp|location=Sequence derived from alignment at F-serratus_M_contig12:136581..147067- (Fucus serratus male)
ATGAAAATAGTAGAGTACTTCCTTCTCGCGCTTATTCCTACGCTGGGGAA
CTCTTTTCACGCCGTCCGCAATGCGATCGATAGCAACCATCATGTTCAAC
TTCGGCGCGGCGGCTTGAAACGCTGGAGGACTTTTGCTCCCCGGCCAGCA
GCAATAGTGGCGCTCGCTATGTCAAGTCCGGAGGGTCCGAGGGATCTGCC
TCGGCTACCTCCCGCAGACTATACCAAGGATGCGATAAGCATTGGGAACC
TGATGAAAATAGTAGAGTACTTCCTTCTCGCGCTTATTCCTACGCTGGGG
AACTCTTTTCACGCCGTCCGCAATGCGATCGATAGCAACCATCATGTTCA
ACTTCGGCGCGGCGGCTTGAAACGCTGGAGGACTTTTGCTCCCCGGCCAG
CAGCAATAGTGGCGCTCGCTATGTCAAGTCCGGAGGGTCCGAGGGATCTG
CCTCGGCTACCTCCCGCAGACTATACCAAGGATGCGATAAGCATTGGGAA
CCTGGGCGAGTCTTCAGCTGAGTTCGGCCATATCATGACCAACCGCAAGT
TGACTCTCTCTTTCACCTGCAATATTTGTGACGAACCCAGCACCTACCAG
GGCGAGTCTTCAGCTGAGTTCGGCCATATCATGACCAACCGCAAGTTGAC
TCTCTCTTTCACCTGCAATATTTGTGACGAACCCAGCACCTACCAGATCA
ACCGCGTTGCTTTCATGCGCGGAATTGTCGTCGTTAAGTGCCAGAACTGC
AACCAGAGGCACCTCATAGCCGACAACCTCGGCAAGATCAACCGCGTTGC
TTTCATGCGCGGAATTGTCGTCGTTAAGTGCCAGAACTGCAACCAGAGGC
ACCTCATAGCCGACAACCTCGGCAAGATGGGCTTCCCGTGGTTCGGACGC
AATTTGGAGGAATACATGGCCAAGCAGGGCACCCCGGTAAAGCGCGTCGT
GTTGACCGAGGACGGCCTTACTCATGTGGAGGCGGAAGTTCCTGGCGCTG
ACTACCCGGAACCTCAGCCGGAGGTGGTCAACGAGACAGGGTTTGATGTA
ACGAGCATCCTGCCTGGGCCGCACGTGGGCGACTCGATACTGTCGGACTT
GCCGTCGTTGAAGTATGGCGGCGTTCCAAGCGATGAGATGGGCTTCCCGT
GGTTCGGACGCAATTTGGAGGAATACATGGCCAAGCAGGGCACCCCGGTA
AAGCGCGTCGTGTTGACCGAGGACGGCCTTACTCATGTGGAGGCGGAAGT
TCCTGGCGCTGACTACCCGGAACCTCAGCCGGAGGTGGTCAACGAGACAG
GGTTTGATGTAACGAGCATCCTGCCTGGGCCGCACGTGGGCGACTCGATA
CTGTCGGACTTGCCGTCGTTGAAGTATGGCGGCGTTCCAAGCGATGAGCG
ACCCCCCCCCCCCGAGGATCGAAATCGCGGTGTATCGTTTGAGATCGTGT
GACGACCCCCCCCCCCCGAGGATCGAAATCGCGGTGTATCGTTTGAGATC
GTGTGA
back to top