mRNA_F-serratus_M_contig1183.1460.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1183.1460.1
Unique NamemRNA_F-serratus_M_contig1183.1460.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5KBE6_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBE6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.150e-27
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+AL YFF+RELV + +ITLH  P++  LADIATK+L KH    ++QQIK+F+
Sbjct:   12 VPINSDSTGALTVAGNAMHSQRTKHVALWYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRLASIIQQIKDFS 88
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.960e-26
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++QQIK+F+
Sbjct:  256 VPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 332
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5K798_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K798_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.280e-26
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++QQIK+F+
Sbjct:  266 VPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 342
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5KEW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.430e-26
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SD TGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATKHL KH F  ++Q+IK+F+
Sbjct:  249 VPINSDGTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKHLPKHRFASIIQRIKDFS 325
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5JKZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.750e-26
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++Q IK+F+
Sbjct:  197 VPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQSIKDFS 273
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.070e-25
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++QQIK+F+
Sbjct:  416 VPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.710e-25
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++QQIK+F+
Sbjct:  624 VPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.750e-25
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ALRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++QQIK+F+
Sbjct: 1011 VPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.030e-25
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNFT 234
            VPI SDSTGAL+VAGN+M S RTKH+ LRYFF+RELV + +ITLH  P++  LADIATK+L KH F  ++QQIK+F+
Sbjct:  780 VPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856
[Close]
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.740e-25
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    4 VPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPTKQMLADIATKHLSKHTFRDLLQQIKNF 231
            VPI SDSTGAL+VA N+MFS+RTKHIALR+FF+REL K ++ITLH  P+  MLADIATKHL K  F  ++Q IK++
Sbjct:  220 VPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLIKDY 295
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1183.1460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBE6_9PHAE8.150e-2763.64Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S5_9PHAE1.960e-2666.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K798_9PHAE2.280e-2666.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEW7_9PHAE3.430e-2664.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKZ9_9PHAE3.750e-2664.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.070e-2566.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.710e-2566.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE1.750e-2566.23Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KE92_9PHAE6.030e-2564.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KC04_9PHAE8.740e-2565.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1183contigF-serratus_M_contig1183:164088..164327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue5.5e-07
Seed eggNOG ortholog4558.Sb01g023130.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.5175695-CDS-F-serratus_M_contig1183:164087..1643271622929086.5175695-CDS-F-serratus_M_contig1183:164087..164327Fucus serratus maleCDSF-serratus_M_contig1183 164088..164327 +
1690962698.9120274-CDS-F-serratus_M_contig1183:164087..1643271690962698.9120274-CDS-F-serratus_M_contig1183:164087..164327Fucus serratus maleCDSF-serratus_M_contig1183 164088..164327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1183.1460.1prot_F-serratus_M_contig1183.1460.1Fucus serratus malepolypeptideF-serratus_M_contig1183 164088..164327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1183.1460.1

>prot_F-serratus_M_contig1183.1460.1 ID=prot_F-serratus_M_contig1183.1460.1|Name=mRNA_F-serratus_M_contig1183.1460.1|organism=Fucus serratus male|type=polypeptide|length=80bp
QVPIRSDSTGALSVAGNSMFSARTKHIALRYFFVRELVKKNKITLHSTPT
KQMLADIATKHLSKHTFRDLLQQIKNFTS*
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mRNA from alignment at F-serratus_M_contig1183:164088..164327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1183.1460.1 ID=mRNA_F-serratus_M_contig1183.1460.1|Name=mRNA_F-serratus_M_contig1183.1460.1|organism=Fucus serratus male|type=mRNA|length=240bp|location=Sequence derived from alignment at F-serratus_M_contig1183:164088..164327+ (Fucus serratus male)
CAGGTCCCCATCCGCAGCGACAGCACAGGAGCACTCAGCGTTGCGGGAAA
TAGCATGTTCAGTGCCAGGACCAAGCATATCGCTCTCCGGTACTTCTTCG
TACGCGAGCTTGTCAAGAAGAACAAGATCACCCTTCACTCCACGCCGACC
AAGCAGATGCTCGCGGACATCGCAACCAAGCACCTGTCCAAGCACACCTT
CCGTGATCTTCTTCAACAGATCAAAAATTTCACGTCTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1183:164088..164327+

>mRNA_F-serratus_M_contig1183.1460.1 ID=mRNA_F-serratus_M_contig1183.1460.1|Name=mRNA_F-serratus_M_contig1183.1460.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig1183:164088..164327+ (Fucus serratus male)
CAGGTCCCCATCCGCAGCGACAGCACAGGAGCACTCAGCGTTGCGGGAAA
TAGCATGTTCAGTGCCAGGACCAAGCATATCGCTCTCCGGTACTTCTTCG
TACGCGAGCTTGTCAAGAAGAACAAGATCACCCTTCACTCCACGCCGACC
AAGCAGATGCTCGCGGACATCGCAACCAAGCACCTGTCCAAGCACACCTT
CCGTGATCTTCTTCAACAGATCAAAAATTTCACGTCTTGACAGGTCCCCA
TCCGCAGCGACAGCACAGGAGCACTCAGCGTTGCGGGAAATAGCATGTTC
AGTGCCAGGACCAAGCATATCGCTCTCCGGTACTTCTTCGTACGCGAGCT
TGTCAAGAAGAACAAGATCACCCTTCACTCCACGCCGACCAAGCAGATGC
TCGCGGACATCGCAACCAAGCACCTGTCCAAGCACACCTTCCGTGATCTT
CTTCAACAGATCAAAAATTTCACGTCTTGA
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