mRNA_F-serratus_M_contig1179.1435.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1179.1435.1
Unique NamemRNA_F-serratus_M_contig1179.1435.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.000e-35
Identity = 68/133 (51.13%), Postives = 78/133 (58.65%), Query Frame = 1 
Query:    1 VDAGHLKGEWKGIMLVATCKDANNTLV-----------------------------QVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVGQ 312
            VDAGHLKG+W G+MLVAT KDA+  LV                              VAT +CDKEN DNY W Y MMK N DM ++L SPKTT+FTD+H SH PAI L APN  WR+CLRH I  L +  GQ
Sbjct:   68 VDAGHLKGDWNGMMLVATSKDADTKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALPEAPGQ 200
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BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5KCW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.820e-31
Identity = 57/92 (61.96%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:   37 IMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVGQ 312
            +MLVAT  DA+  LV VAT +CDKEN DNY W Y MMK N DM ++L SPKTT+FTD+H SH PAI L APN  WR+CLRH I  L +  GQ
Sbjct:    1 MMLVATGTDADTKLVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALPEAPGQ 92
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BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.700e-31
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:    1 VDAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVGQV 315
            +D GHLKGEW G+ML  TCKDANN ++ VATV+  KE+   YK L +  KKN  M D+L   KTT FTDQH     A+  EAP  Q R+CLRH+I N  +K+G +
Sbjct:   12 MDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNSEEKIGSM 116
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BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.150e-30
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   37 IMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVGQ 312
            +MLVAT  DA+  LV VAT +CDKEN DNY W Y+MMK + DM ++L SPKTT+FTD+H SH PAI L APN  WR+CLRH I  L +  GQ
Sbjct:    1 MMLVATGTDADTKLVHVATSICDKENTDNYSWFYRMMKNDVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALPEAPGQ 92
[Close]
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.800e-29
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   37 IMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVGQV 315
            +MLVAT  DA+N L+ VAT +CDKENADNY W Y+MMK N +M  +L SPKTT+FTD+HLSH PAI + A    WR+CLRH+I  L +  G +
Sbjct:    1 MMLVATGMDADNRLMHVATGICDKENADNYSWFYRMMKNNAEMAKVLNSPKTTLFTDKHLSHEPAIRVHASKPVWRWCLRHVIRRLPEAPGSI 93
[Close]
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.240e-28
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 VDAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVG 309
            +D GHLKGEW G+ML  TCKDANN  + VATV+  KE+   YK L +  KKN  M D+L   KTT FTDQH     A+  EAP  Q R+CLRH+I NL +K+G
Sbjct:  196 MDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIG 298
[Close]
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.330e-26
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    4 DAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVGQV 315
            D GHLKGEW G++L  TCKDANN ++ VATV+  KE+   YK L +  KKN  M D+L   KT  FTDQH     A+  EAP  Q R+CLRHII N+ +K+G V
Sbjct:  174 DGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNI-EKIGSV 276
[Close]
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.080e-26
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 VDAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVG 309
            +D GHLKGEW G+ML  TCKDA+N ++ VATV+  KE+   YK L +  K N  M D+L   KTT FTDQH     A+  EAP  Q R+CLRH+I NL +K+G
Sbjct:  238 MDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNLEEKIG 339
[Close]
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.540e-25
Identity = 53/103 (51.46%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 VDAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVG 309
            +D GHLKGEW G+ML  TCKDANN  + VA V+  KE+   Y  L +  KKN  M D+L   KTT FTDQH     A+  EAP  Q R CLRH+I N+ +K+G
Sbjct:  199 MDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNIEEKIG 301
[Close]
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Match: A0A6H5K043_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K043_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.020e-25
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 VDAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMKKNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQKVG 309
            +D GHLKGEW G+ML  TCKDANN    VATV+  KE+   +K L +  K N  M D+L   KTT FTDQH     A+  EAP  Q R+CLRH++ NL +++G
Sbjct:   13 MDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKEDTSLHKTLLRNWK-NPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLLLNLEEEIG 114
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1179.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K832_9PHAE6.000e-3551.13MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCW3_9PHAE1.820e-3161.96MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K734_9PHAE6.700e-3152.38MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KJU4_9PHAE4.150e-3060.87MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
A0A6H5K0L7_9PHAE1.800e-2958.06MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LCT1_9PHAE1.240e-2854.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAG6_9PHAE3.330e-2652.88MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE6.080e-2652.43MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L490_9PHAE2.540e-2551.46MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K043_9PHAE8.020e-2550.49MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1179contigF-serratus_M_contig1179:2780..3097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.3
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog90675.XP_010474558.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CN5X@1,2QU1T@2759,37T40@33090,3GGBN@35493,3HVMH@3699
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929079.1045504-CDS-F-serratus_M_contig1179:2779..30971622929079.1045504-CDS-F-serratus_M_contig1179:2779..3097Fucus serratus maleCDSF-serratus_M_contig1179 2780..3097 -
1690962695.976509-CDS-F-serratus_M_contig1179:2779..30971690962695.976509-CDS-F-serratus_M_contig1179:2779..3097Fucus serratus maleCDSF-serratus_M_contig1179 2780..3097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1179.1435.1prot_F-serratus_M_contig1179.1435.1Fucus serratus malepolypeptideF-serratus_M_contig1179 2780..3097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1179.1435.1

>prot_F-serratus_M_contig1179.1435.1 ID=prot_F-serratus_M_contig1179.1435.1|Name=mRNA_F-serratus_M_contig1179.1435.1|organism=Fucus serratus male|type=polypeptide|length=106bp
VDAGHLKGEWKGIMLVATCKDANNTLVQVATVVCDKENADNYKWLYKMMK
KNFDMNDMLTSPKTTIFTDQHLSHAPAINLEAPNCQWRFCLRHIIGNLSQ
KVGQV*
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mRNA from alignment at F-serratus_M_contig1179:2780..3097-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1179.1435.1 ID=mRNA_F-serratus_M_contig1179.1435.1|Name=mRNA_F-serratus_M_contig1179.1435.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig1179:2780..3097- (Fucus serratus male)
GTGGATGCCGGCCACCTCAAGGGTGAGTGGAAAGGTATTATGCTGGTCGC
GACCTGCAAGGACGCCAACAACACCTTGGTACAGGTGGCGACGGTCGTCT
GCGACAAGGAGAACGCCGACAACTACAAGTGGCTGTACAAGATGATGAAG
AAAAATTTCGACATGAACGACATGCTCACCAGCCCCAAGACCACCATCTT
CACGGATCAGCACCTTTCGCATGCCCCTGCTATCAACCTCGAGGCGCCGA
ACTGCCAGTGGAGATTTTGCCTTCGGCACATCATTGGGAACCTCAGCCAG
AAGGTTGGCCAGGTATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1179:2780..3097-

>mRNA_F-serratus_M_contig1179.1435.1 ID=mRNA_F-serratus_M_contig1179.1435.1|Name=mRNA_F-serratus_M_contig1179.1435.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1179:2780..3097- (Fucus serratus male)
GTGGATGCCGGCCACCTCAAGGGTGAGTGGAAAGGTATTATGCTGGTCGC
GACCTGCAAGGACGCCAACAACACCTTGGTACAGGTGGCGACGGTCGTCT
GCGACAAGGAGAACGCCGACAACTACAAGTGGCTGTACAAGATGATGAAG
AAAAATTTCGACATGAACGACATGCTCACCAGCCCCAAGACCACCATCTT
CACGGATCAGCACCTTTCGCATGCCCCTGCTATCAACCTCGAGGCGCCGA
ACTGCCAGTGGAGATTTTGCCTTCGGCACATCATTGGGAACCTCAGCCAG
AAGGTTGGCCAGGTATAAGTGGATGCCGGCCACCTCAAGGGTGAGTGGAA
AGGTATTATGCTGGTCGCGACCTGCAAGGACGCCAACAACACCTTGGTAC
AGGTGGCGACGGTCGTCTGCGACAAGGAGAACGCCGACAACTACAAGTGG
CTGTACAAGATGATGAAGAAAAATTTCGACATGAACGACATGCTCACCAG
CCCCAAGACCACCATCTTCACGGATCAGCACCTTTCGCATGCCCCTGCTA
TCAACCTCGAGGCGCCGAACTGCCAGTGGAGATTTTGCCTTCGGCACATC
ATTGGGAACCTCAGCCAGAAGGTTGGCCAGGTATAA
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